Wall clock time and date at job start Tue Mar 31 2020 20:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47182 * 2 1 4 4 C 1.34785 * 119.99255 * 297.62923 * 3 2 1 5 5 O 1.21579 * 120.00454 * 354.60909 * 4 3 2 6 6 N 1.34779 * 119.99448 * 174.60822 * 4 3 2 7 7 C 1.46965 * 120.59146 * 184.34799 * 6 4 3 8 8 C 1.53373 * 108.63475 * 235.25065 * 7 6 4 9 9 N 1.46959 * 108.63370 * 310.57903 * 8 7 6 10 10 C 1.36940 * 120.58954 * 235.19946 * 9 8 7 11 11 H 1.08004 * 119.99928 * 148.80023 * 10 9 8 12 12 C 1.38809 * 120.00445 * 328.52818 * 10 9 8 13 13 N 1.31625 * 119.99701 * 348.29591 * 12 10 9 14 14 Si 1.86797 * 120.00142 * 168.29788 * 12 10 9 15 15 H 1.48506 * 109.47295 * 90.00128 * 14 12 10 16 16 H 1.48503 * 109.46954 * 209.99666 * 14 12 10 17 17 H 1.48494 * 109.47234 * 329.99546 * 14 12 10 18 18 C 1.46965 * 118.81795 * 55.47748 * 9 8 7 19 19 C 1.46968 * 120.59434 * 4.37387 * 6 4 3 20 20 C 1.52992 * 109.47646 * 239.99271 * 2 1 3 21 21 C 1.53002 * 117.49603 * 3.75069 * 20 2 1 22 22 C 1.53002 * 117.50124 * 295.09103 * 20 2 1 23 23 C 1.53009 * 109.47014 * 119.99245 * 2 1 3 24 24 F 1.39902 * 109.47120 * 293.92310 * 23 2 1 25 25 F 1.39897 * 109.46719 * 53.91797 * 23 2 1 26 26 F 1.39900 * 109.47031 * 173.92081 * 23 2 1 27 27 H 1.08998 * 109.46812 * 60.00717 * 1 2 3 28 28 H 1.09007 * 109.46742 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47614 * 300.00326 * 1 2 3 30 30 H 0.96998 * 120.00352 * 117.62380 * 3 2 1 31 31 H 1.08993 * 109.60928 * 115.50882 * 7 6 4 32 32 H 1.08997 * 109.60965 * 354.99370 * 7 6 4 33 33 H 1.09003 * 109.61330 * 190.82974 * 8 7 6 34 34 H 1.09008 * 109.61085 * 70.32156 * 8 7 6 35 35 H 0.96999 * 119.99662 * 180.02562 * 13 12 10 36 36 H 1.09006 * 109.60665 * 64.26240 * 18 9 8 37 37 H 1.09000 * 109.60975 * 184.77631 * 18 9 8 38 38 H 1.08996 * 109.60465 * 244.49226 * 19 6 4 39 39 H 1.08998 * 109.61144 * 4.83490 * 19 6 4 40 40 H 1.09000 * 115.54844 * 149.41341 * 20 2 1 41 41 H 1.08999 * 117.50331 * 359.97438 * 21 20 2 42 42 H 1.09000 * 117.49865 * 145.02230 * 21 20 2 43 43 H 1.09002 * 117.49804 * 214.97928 * 22 20 2 44 44 H 1.09001 * 117.49756 * 359.97438 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 1.7325 2.1969 -1.0342 5 8 1.1545 1.7607 -2.0109 6 7 2.0875 3.4962 -0.9857 7 6 1.6996 4.4183 -2.0623 8 6 2.9640 5.0917 -2.6102 9 7 3.7464 5.6115 -1.4800 10 6 4.1080 6.9314 -1.4313 11 1 4.2104 7.4284 -0.4779 12 6 4.3483 7.6292 -2.6070 13 7 4.4564 6.9802 -3.7470 14 14 4.5186 9.4890 -2.5712 15 1 5.9426 9.8518 -2.3570 16 1 4.0530 10.0536 -3.8634 17 1 3.6955 10.0402 -1.4650 18 6 4.1392 4.6883 -0.4062 19 6 2.8700 4.0161 0.1445 20 6 2.0401 -0.7213 -1.2490 21 6 0.9988 -1.2033 -2.2612 22 6 1.7331 -2.2148 -1.3773 23 6 2.0400 -0.7211 1.2494 24 9 1.6911 0.0142 2.3873 25 9 1.4630 -1.9935 1.3215 26 9 3.4320 -0.8434 1.1817 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 2.5472 1.7087 0.7442 31 1 1.0228 5.1764 -1.6685 32 1 1.2063 3.8626 -2.8598 33 1 2.6844 5.9129 -3.2702 34 1 3.5576 4.3621 -3.1613 35 1 4.6248 7.4677 -4.5685 36 1 4.8145 3.9307 -0.8039 37 1 4.6359 5.2431 0.3898 38 1 2.2765 4.7456 0.6954 39 1 3.1471 3.1953 0.8060 40 1 2.9950 -0.3685 -1.6387 41 1 -0.0496 -1.0069 -2.0370 42 1 1.2689 -1.1681 -3.3166 43 1 2.4859 -2.8444 -1.8516 44 1 1.1680 -2.6834 -0.5716 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674822607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:28 Heat of formation + Delta-G solvation = -121.393913 kcal Electronic energy + Delta-G solvation = -31382.072659 eV Core-core repulsion = 26728.498150 eV Total energy + Delta-G solvation = -4653.574509 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.156 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -51.28665 -48.77753 -48.71358 -41.68454 -39.55278 -38.12703 -35.81528 -35.48793 -33.09346 -32.30032 -31.06613 -28.58204 -27.84874 -25.55152 -24.82100 -24.30693 -23.27180 -22.78087 -21.36217 -20.19403 -19.95571 -19.52208 -19.50383 -18.46824 -17.94164 -17.52031 -16.82863 -16.64971 -16.30261 -15.77937 -15.52467 -15.46789 -15.46184 -15.22796 -15.14815 -15.06842 -14.97066 -14.90915 -14.83008 -14.70888 -14.18250 -13.63878 -13.40162 -13.19705 -13.08708 -12.99027 -12.67781 -12.54993 -12.43828 -12.30641 -12.04304 -12.01322 -11.88385 -11.67654 -11.46046 -11.30912 -10.82236 -10.60860 -10.39596 -9.70802 -8.59786 -7.86657 -5.40916 1.22080 1.48973 1.50559 1.58244 1.60230 2.09271 2.43555 2.50109 2.64817 2.86442 2.93869 3.18912 3.29458 3.57276 3.60249 3.69696 3.98028 4.14393 4.19001 4.22575 4.27464 4.35349 4.48347 4.51542 4.64019 4.68561 4.79403 4.82794 4.84046 4.99796 5.03209 5.06747 5.18839 5.23345 5.24574 5.26429 5.49714 5.60706 5.64344 5.90194 6.38450 6.87271 7.11903 7.50375 7.79513 8.34046 9.17763 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.023864 B = 0.003099 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.047018 B = 9033.762865 C = 9557.343338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.191 3.809 3 N -0.733 5.733 4 C 0.713 3.287 5 O -0.601 6.601 6 N -0.618 5.618 7 C 0.124 3.876 8 C 0.171 3.829 9 N -0.608 5.608 10 C -0.264 4.264 11 H 0.074 0.926 12 C -0.048 4.048 13 N -0.937 5.937 14 Si 0.971 3.029 15 H -0.286 1.286 16 H -0.295 1.295 17 H -0.266 1.266 18 C 0.127 3.873 19 C 0.105 3.895 20 C -0.177 4.177 21 C -0.144 4.144 22 C -0.168 4.168 23 C 0.461 3.539 24 F -0.177 7.177 25 F -0.163 7.163 26 F -0.178 7.178 27 H 0.085 0.915 28 H 0.097 0.903 29 H 0.075 0.925 30 H 0.406 0.594 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.070 0.930 34 H -0.011 1.011 35 H 0.250 0.750 36 H 0.011 0.989 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.097 0.903 40 H 0.093 0.907 41 H 0.108 0.892 42 H 0.087 0.913 43 H 0.107 0.893 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.977 -17.711 11.565 22.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.102 3.898 3 N -0.394 5.394 4 C 0.415 3.585 5 O -0.480 6.480 6 N -0.354 5.354 7 C -0.001 4.001 8 C 0.044 3.956 9 N -0.331 5.331 10 C -0.394 4.394 11 H 0.091 0.909 12 C -0.243 4.243 13 N -0.583 5.583 14 Si 0.799 3.201 15 H -0.213 1.213 16 H -0.222 1.222 17 H -0.191 1.191 18 C 0.001 3.999 19 C -0.019 4.019 20 C -0.196 4.196 21 C -0.181 4.181 22 C -0.205 4.205 23 C 0.407 3.593 24 F -0.158 7.158 25 F -0.145 7.145 26 F -0.160 7.160 27 H 0.103 0.897 28 H 0.115 0.885 29 H 0.094 0.906 30 H 0.245 0.755 31 H 0.084 0.916 32 H 0.098 0.902 33 H 0.088 0.912 34 H 0.007 0.993 35 H 0.059 0.941 36 H 0.029 0.971 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.115 0.885 40 H 0.111 0.889 41 H 0.126 0.874 42 H 0.105 0.895 43 H 0.126 0.874 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -8.358 -17.940 10.765 22.530 hybrid contribution 1.051 1.273 -0.039 1.652 sum -7.307 -16.667 10.727 21.125 Atomic orbital electron populations 1.22396 0.90241 1.04950 1.04852 1.20610 0.97154 0.81453 0.90577 1.44997 1.59889 1.10455 1.24026 1.15656 0.79442 0.80734 0.82658 1.90863 1.49116 1.74929 1.33111 1.47235 1.56705 1.06795 1.24674 1.21997 0.97495 0.91059 0.89519 1.20910 0.89400 0.95630 0.89659 1.44194 1.60692 1.05771 1.22477 1.19554 1.40505 0.86572 0.92811 0.90861 1.25948 0.99687 1.02626 0.96059 1.70145 1.53709 1.35683 0.98760 0.85233 0.77730 0.80300 0.76878 1.21283 1.22173 1.19093 1.21536 0.94064 0.92497 0.91838 1.22290 0.93241 0.98910 0.87472 1.22286 1.01570 0.97803 0.97949 1.22967 0.97766 1.01178 0.96182 1.23454 1.03774 0.89825 1.03470 1.20380 0.75732 0.78193 0.85038 1.93207 1.91786 1.76879 1.53949 1.93147 1.84262 1.40692 1.96359 1.93216 1.30329 1.95945 1.96465 0.89668 0.88475 0.90603 0.75500 0.91648 0.90174 0.91170 0.99275 0.94057 0.97107 0.90274 0.90367 0.88491 0.88906 0.87401 0.89458 0.87433 0.86411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.21 6.75 71.98 0.49 -2.72 16 2 C 0.19 4.11 0.48 3.60 0.00 4.11 16 3 N -0.73 -18.13 4.90 -438.00 -2.15 -20.28 16 4 C 0.71 22.89 7.71 179.05 1.38 24.27 16 5 O -0.60 -22.00 12.48 -3.97 -0.05 -22.05 16 6 N -0.62 -20.99 2.95 -835.15 -2.46 -23.45 16 7 C 0.12 4.85 6.60 86.42 0.57 5.42 16 8 C 0.17 8.25 5.46 86.42 0.47 8.72 16 9 N -0.61 -29.35 2.95 -697.32 -2.06 -31.41 16 10 C -0.26 -13.88 9.57 84.03 0.80 -13.08 16 11 H 0.07 3.67 7.86 -2.91 -0.02 3.64 16 12 C -0.05 -2.58 5.03 84.86 0.43 -2.16 16 13 N -0.94 -54.67 11.08 21.65 0.24 -54.43 16 14 Si 0.97 43.53 29.57 68.60 2.03 45.56 16 15 H -0.29 -12.71 7.11 99.48 0.71 -12.01 16 16 H -0.30 -13.43 7.11 99.48 0.71 -12.72 16 17 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 18 C 0.13 4.84 6.70 86.57 0.58 5.42 16 19 C 0.11 3.11 6.58 86.56 0.57 3.68 16 20 C -0.18 -4.08 3.65 -10.79 -0.04 -4.12 16 21 C -0.14 -3.07 8.77 30.62 0.27 -2.80 16 22 C -0.17 -2.93 9.23 30.62 0.28 -2.65 16 23 C 0.46 8.90 2.17 71.99 0.16 9.05 16 24 F -0.18 -3.34 16.61 44.97 0.75 -2.59 16 25 F -0.16 -2.82 13.82 44.97 0.62 -2.20 16 26 F -0.18 -3.78 16.87 44.97 0.76 -3.02 16 27 H 0.08 2.03 5.61 -2.39 -0.01 2.02 16 28 H 0.10 1.44 6.70 -2.38 -0.02 1.43 16 29 H 0.08 1.34 7.97 -2.39 -0.02 1.32 16 30 H 0.41 8.69 5.67 -92.71 -0.53 8.17 16 31 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 32 H 0.08 3.16 6.99 -2.39 -0.02 3.14 16 33 H 0.07 3.80 6.05 -2.39 -0.01 3.79 16 34 H -0.01 -0.59 8.14 -2.38 -0.02 -0.61 16 35 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 36 H 0.01 0.44 8.14 -2.38 -0.02 0.42 16 37 H 0.08 2.79 7.93 -2.39 -0.02 2.77 16 38 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.10 2.14 5.59 -2.39 -0.01 2.13 16 40 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 41 H 0.11 2.17 5.82 -2.39 -0.01 2.15 16 42 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.12 1.74 5.82 -2.39 -0.01 1.73 16 Total: -1.00 -63.79 348.57 4.16 -59.63 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: 0.53 Total: 21.09 kcal Atomic # 6 Polarization: 27.20 SS G_CDS: 5.96 Total: 33.16 kcal Atomic # 7 Polarization: -123.14 SS G_CDS: -6.43 Total: -129.56 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: -0.05 Total: -22.05 kcal Atomic # 9 Polarization: -9.94 SS G_CDS: 2.13 Total: -7.81 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -63.79 4.16 -59.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674822607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.768 kcal (2) G-P(sol) polarization free energy of solvation -63.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds