Wall clock time and date at job start Tue Mar 31 2020 19:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35125 * 125.61561 * 2 1 4 4 C 1.40370 * 107.11523 * 179.78301 * 3 2 1 5 5 C 1.36545 * 106.70349 * 0.34938 * 4 3 2 6 6 C 1.46664 * 125.98548 * 179.91053 * 5 4 3 7 7 O 1.21694 * 119.99835 * 359.71634 * 6 5 4 8 8 N 1.34771 * 119.99942 * 179.71615 * 6 5 4 9 9 C 1.46499 * 119.99682 * 179.97438 * 8 6 5 10 10 C 1.53003 * 109.46833 * 180.02562 * 9 8 6 11 11 H 1.08993 * 112.85297 * 43.80458 * 10 9 8 12 12 C 1.53781 * 113.61329 * 175.00032 * 10 9 8 13 13 C 1.53783 * 87.08388 * 139.98053 * 12 10 9 14 14 H 1.09007 * 113.61302 * 89.19931 * 13 12 10 15 15 N 1.46901 * 113.61550 * 220.01914 * 13 12 10 16 16 C 1.46906 * 110.99698 * 204.99556 * 15 13 12 17 17 C 1.50698 * 109.46688 * 179.97438 * 16 15 13 18 18 O 1.21293 * 120.00006 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99538 * 179.97438 * 17 16 15 20 20 C 1.37102 * 119.99634 * 180.02562 * 19 17 16 21 21 H 1.08001 * 120.00399 * 0.02562 * 20 19 17 22 22 C 1.38954 * 120.00062 * 180.02562 * 20 19 17 23 23 N 1.31414 * 119.99693 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00141 * 179.72913 * 22 20 19 25 25 H 1.48502 * 109.47314 * 180.27179 * 24 22 20 26 26 H 1.48506 * 109.46947 * 300.27161 * 24 22 20 27 27 H 1.48493 * 109.47595 * 60.27030 * 24 22 20 28 28 C 1.53781 * 113.61509 * 272.49681 * 10 9 8 29 29 O 1.33936 * 125.61320 * 180.02562 * 2 1 3 30 30 H 1.09006 * 109.47007 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46961 * 299.97038 * 1 2 3 32 32 H 1.09001 * 109.47249 * 59.97780 * 1 2 3 33 33 H 1.07996 * 126.44400 * 0.02562 * 3 2 1 34 34 H 1.07995 * 126.65021 * 180.22819 * 4 3 2 35 35 H 0.96997 * 120.00221 * 0.02562 * 8 6 5 36 36 H 1.08994 * 109.47647 * 60.00612 * 9 8 6 37 37 H 1.09004 * 109.47552 * 299.99814 * 9 8 6 38 38 H 1.09004 * 113.61715 * 25.43327 * 12 10 9 39 39 H 1.09002 * 113.69160 * 254.54179 * 12 10 9 40 40 H 1.00894 * 110.99721 * 81.04637 * 15 13 12 41 41 H 1.09003 * 109.46625 * 60.00478 * 16 15 13 42 42 H 1.08993 * 109.47154 * 300.00621 * 16 15 13 43 43 H 0.96991 * 120.00493 * 0.02562 * 19 17 16 44 44 H 0.97005 * 120.00032 * 359.72836 * 23 22 20 45 45 H 1.08994 * 113.61339 * 105.46896 * 28 10 9 46 46 H 1.09002 * 113.61447 * 334.56416 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0985 0.0000 4 6 3.6251 0.6531 0.0051 5 6 3.5823 -0.7117 0.0000 6 6 4.7415 -1.6102 0.0007 7 8 5.8680 -1.1500 0.0011 8 7 4.5590 -2.9455 0.0010 9 6 5.7169 -3.8430 0.0012 10 6 5.2362 -5.2956 0.0009 11 1 4.4152 -5.4696 -0.6945 12 6 6.3753 -6.3213 -0.1217 13 6 5.6146 -7.1720 0.9091 14 1 4.8974 -7.8609 0.4628 15 7 6.4879 -7.8189 1.8976 16 6 5.8554 -9.0244 2.4497 17 6 6.7789 -9.6595 3.4571 18 8 7.8576 -9.1572 3.6922 19 7 6.4057 -10.7852 4.0974 20 6 7.2456 -11.3628 5.0142 21 1 8.2061 -10.9156 5.2237 22 6 6.8612 -12.5237 5.6741 23 7 5.6923 -13.0676 5.4196 24 14 8.0087 -13.3148 6.9177 25 1 7.3717 -14.5364 7.4719 26 1 9.2844 -13.6807 6.2513 27 1 8.2825 -12.3565 8.0184 28 6 4.9840 -5.8613 1.4085 29 8 2.2870 -1.0889 -0.0005 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5134 0.8902 32 1 -0.3634 0.5142 -0.8898 33 1 1.9613 2.1259 0.0004 34 1 4.5113 1.2702 0.0099 35 1 3.6610 -3.3123 0.0004 36 1 6.3188 -3.6594 0.8911 37 1 6.3189 -3.6597 -0.8888 38 1 7.3355 -5.9529 0.2395 39 1 6.4430 -6.7851 -1.1058 40 1 6.7418 -7.1752 2.6318 41 1 5.6555 -9.7311 1.6443 42 1 4.9184 -8.7529 2.9357 43 1 5.5430 -11.1867 3.9097 44 1 5.0962 -12.6566 4.7741 45 1 3.9273 -5.9529 1.6593 46 1 5.5639 -5.3671 2.1880 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688898887.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:49 Heat of formation + Delta-G solvation = -40.613526 kcal Electronic energy + Delta-G solvation = -26994.821807 eV Core-core repulsion = 22886.606938 eV Total energy + Delta-G solvation = -4108.214869 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.15236 -40.14771 -39.22823 -38.19013 -35.32555 -34.40565 -33.76958 -33.24702 -32.47465 -31.05630 -29.05957 -27.30646 -26.03097 -25.81340 -23.93977 -22.81577 -22.06315 -21.62534 -20.71216 -20.07325 -19.46493 -18.58670 -17.90090 -16.96087 -16.61143 -16.37678 -16.03168 -15.69509 -15.45544 -15.07462 -14.80917 -14.58047 -14.13053 -13.87836 -13.76429 -13.71696 -13.56852 -13.49763 -13.43988 -13.20944 -12.70123 -12.58774 -12.52636 -12.47005 -11.88842 -11.63193 -11.23492 -11.14314 -10.94188 -10.86412 -10.55018 -10.48428 -10.45292 -10.20023 -9.86195 -9.54323 -9.52766 -8.92379 -8.50179 -8.08462 -8.01716 -6.75193 -3.88218 0.61088 1.86379 2.13819 2.78694 2.81321 3.31673 3.35553 3.55861 3.84912 4.06489 4.07828 4.29761 4.32013 4.35723 4.45066 4.48479 4.63954 4.75796 4.78870 4.85231 4.92142 5.06494 5.08387 5.17986 5.19849 5.25765 5.36400 5.40372 5.49544 5.55514 5.61834 5.64663 5.68535 5.78229 5.89098 5.90504 5.92319 6.01465 6.06259 6.22803 6.39313 7.05737 7.18800 7.59823 7.69036 7.81440 8.08479 8.60500 8.80327 9.47975 9.88276 10.68273 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021677 B = 0.001543 C = 0.001501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.368564 B =18144.035543 C =18645.924950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.020 3.980 3 C -0.225 4.225 4 C -0.115 4.115 5 C -0.083 4.083 6 C 0.602 3.398 7 O -0.520 6.520 8 N -0.717 5.717 9 C 0.130 3.870 10 C -0.125 4.125 11 H 0.096 0.904 12 C -0.115 4.115 13 C 0.068 3.932 14 H 0.096 0.904 15 N -0.657 5.657 16 C 0.050 3.950 17 C 0.442 3.558 18 O -0.577 6.577 19 N -0.576 5.576 20 C -0.383 4.383 21 H 0.099 0.901 22 C -0.010 4.010 23 N -0.901 5.901 24 Si 1.092 2.908 25 H -0.279 1.279 26 H -0.284 1.284 27 H -0.284 1.284 28 C -0.166 4.166 29 O -0.163 6.163 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.157 0.843 34 H 0.161 0.839 35 H 0.405 0.595 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.091 0.909 39 H 0.072 0.928 40 H 0.352 0.648 41 H 0.085 0.915 42 H 0.043 0.957 43 H 0.375 0.625 44 H 0.261 0.739 45 H 0.066 0.934 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.976 24.880 -14.412 31.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.032 4.032 3 C -0.244 4.244 4 C -0.135 4.135 5 C -0.135 4.135 6 C 0.388 3.612 7 O -0.398 6.398 8 N -0.367 5.367 9 C 0.007 3.993 10 C -0.144 4.144 11 H 0.114 0.886 12 C -0.154 4.154 13 C -0.043 4.043 14 H 0.114 0.886 15 N -0.288 5.288 16 C -0.083 4.083 17 C 0.228 3.772 18 O -0.460 6.460 19 N -0.214 5.214 20 C -0.512 4.512 21 H 0.117 0.883 22 C -0.212 4.212 23 N -0.541 5.541 24 Si 0.918 3.082 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.210 1.210 28 C -0.205 4.205 29 O -0.060 6.060 30 H 0.099 0.901 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.174 0.826 34 H 0.178 0.822 35 H 0.240 0.760 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.110 0.890 39 H 0.090 0.910 40 H 0.173 0.827 41 H 0.103 0.897 42 H 0.061 0.939 43 H 0.208 0.792 44 H 0.072 0.928 45 H 0.085 0.915 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -11.950 23.533 -13.626 29.704 hybrid contribution -1.852 1.522 -0.665 2.488 sum -13.802 25.056 -14.291 31.977 Atomic orbital electron populations 1.20444 0.84425 1.04618 1.04141 1.22860 0.94340 0.84048 1.01986 1.21602 0.92325 0.99945 1.10500 1.21978 0.98705 0.92955 0.99907 1.22042 0.81855 0.94700 1.14917 1.16545 0.86044 0.81601 0.77032 1.90904 1.22065 1.76146 1.50658 1.45927 1.11029 1.05354 1.74426 1.21503 0.87440 0.87395 1.02982 1.22671 1.00379 0.92835 0.98548 0.88580 1.23056 0.97732 0.94995 0.99645 1.22999 0.93937 0.92903 0.94462 0.88622 1.60011 1.41428 1.08299 1.19056 1.21712 0.95393 0.93492 0.97654 1.19773 0.88734 0.83484 0.85207 1.90531 1.23784 1.64241 1.67461 1.41939 1.18410 1.23405 1.37664 1.20546 1.02025 1.10079 1.18541 0.88328 1.26515 0.99559 0.94304 1.00813 1.70906 1.08504 1.40867 1.33785 0.83126 0.74101 0.76123 0.74887 1.20423 1.20977 1.21040 1.23858 1.01674 0.98499 0.96458 1.84003 1.15986 1.35053 1.70915 0.90137 0.89053 0.89084 0.82559 0.82155 0.76007 0.90649 0.90806 0.89010 0.90959 0.82718 0.89696 0.93937 0.79166 0.92804 0.91498 0.89484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.23 10.41 36.01 0.37 0.14 16 2 C 0.02 0.14 7.31 -35.41 -0.26 -0.12 16 3 C -0.22 -1.55 10.77 -39.89 -0.43 -1.98 16 4 C -0.11 -1.03 10.62 -39.39 -0.42 -1.45 16 5 C -0.08 -0.83 7.13 -36.79 -0.26 -1.09 16 6 C 0.60 6.74 7.79 -12.86 -0.10 6.64 16 7 O -0.52 -7.48 16.86 5.19 0.09 -7.39 16 8 N -0.72 -6.34 5.55 -61.62 -0.34 -6.68 16 9 C 0.13 1.16 5.51 -4.04 -0.02 1.14 16 10 C -0.13 -1.00 3.75 -89.81 -0.34 -1.33 16 11 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 12 C -0.12 -1.13 7.44 -25.92 -0.19 -1.33 16 13 C 0.07 0.77 4.18 -66.90 -0.28 0.49 16 14 H 0.10 1.01 7.87 -51.92 -0.41 0.60 16 15 N -0.66 -10.36 6.24 -107.12 -0.67 -11.03 16 16 C 0.05 0.87 6.01 -4.97 -0.03 0.84 16 17 C 0.44 10.52 7.82 -10.99 -0.09 10.43 16 18 O -0.58 -15.95 15.78 5.55 0.09 -15.86 16 19 N -0.58 -14.59 5.28 -10.96 -0.06 -14.65 16 20 C -0.38 -10.86 9.68 -14.93 -0.14 -11.01 16 21 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 22 C -0.01 -0.26 5.50 -17.47 -0.10 -0.36 16 23 N -0.90 -25.33 13.68 55.50 0.76 -24.57 16 24 Si 1.09 24.41 29.92 -169.99 -5.09 19.33 16 25 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 26 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 27 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 28 C -0.17 -1.56 7.25 -25.92 -0.19 -1.75 16 29 O -0.16 -1.41 10.40 4.99 0.05 -1.36 16 30 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 32 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 33 H 0.16 0.68 8.06 -52.49 -0.42 0.26 16 34 H 0.16 1.31 8.06 -52.49 -0.42 0.88 16 35 H 0.41 2.81 8.23 -40.82 -0.34 2.48 16 36 H 0.08 0.77 7.84 -51.93 -0.41 0.36 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.09 1.00 8.10 -51.93 -0.42 0.58 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.35 5.81 7.89 -39.29 -0.31 5.50 16 41 H 0.08 1.35 8.13 -51.93 -0.42 0.93 16 42 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.38 8.74 6.73 -40.82 -0.27 8.46 16 44 H 0.26 7.03 6.78 -40.82 -0.28 6.75 16 45 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.09 0.90 7.58 -51.93 -0.39 0.51 16 LS Contribution 393.78 15.07 5.93 5.93 Total: -1.00 -35.63 393.78 -8.35 -43.98 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: -6.65 Total: 13.02 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: -2.47 Total: -0.72 kcal Atomic # 7 Polarization: -56.61 SS G_CDS: -0.31 Total: -56.92 kcal Atomic # 8 Polarization: -24.84 SS G_CDS: 0.23 Total: -24.61 kcal Atomic # 14 Polarization: 24.41 SS G_CDS: -5.09 Total: 19.33 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.63 -8.35 -43.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688898887.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.367 kcal (2) G-P(sol) polarization free energy of solvation -35.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds