Wall clock time and date at job start Tue Mar 31 2020 19:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35125 * 125.61561 * 2 1 4 4 C 1.40370 * 107.11523 * 179.78301 * 3 2 1 5 5 C 1.36545 * 106.70349 * 0.34938 * 4 3 2 6 6 C 1.46664 * 125.98548 * 179.91053 * 5 4 3 7 7 O 1.21694 * 119.99835 * 359.71634 * 6 5 4 8 8 N 1.34771 * 119.99942 * 179.71615 * 6 5 4 9 9 C 1.46499 * 119.99682 * 179.97438 * 8 6 5 10 10 C 1.53003 * 109.46833 * 180.02562 * 9 8 6 11 11 H 1.08993 * 112.85297 * 43.80458 * 10 9 8 12 12 C 1.53781 * 113.61329 * 175.00032 * 10 9 8 13 13 C 1.53783 * 87.08388 * 139.98053 * 12 10 9 14 14 H 1.09007 * 113.61302 * 89.19931 * 13 12 10 15 15 N 1.46901 * 113.61550 * 220.01914 * 13 12 10 16 16 C 1.46906 * 110.99698 * 204.99556 * 15 13 12 17 17 C 1.50698 * 109.46688 * 179.97438 * 16 15 13 18 18 O 1.21293 * 120.00006 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99538 * 179.97438 * 17 16 15 20 20 C 1.37102 * 119.99634 * 180.02562 * 19 17 16 21 21 H 1.08001 * 120.00399 * 0.02562 * 20 19 17 22 22 C 1.38954 * 120.00062 * 180.02562 * 20 19 17 23 23 N 1.31414 * 119.99693 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00141 * 179.72913 * 22 20 19 25 25 H 1.48502 * 109.47314 * 180.27179 * 24 22 20 26 26 H 1.48506 * 109.46947 * 300.27161 * 24 22 20 27 27 H 1.48493 * 109.47595 * 60.27030 * 24 22 20 28 28 C 1.53781 * 113.61509 * 272.49681 * 10 9 8 29 29 O 1.33936 * 125.61320 * 180.02562 * 2 1 3 30 30 H 1.09006 * 109.47007 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46961 * 299.97038 * 1 2 3 32 32 H 1.09001 * 109.47249 * 59.97780 * 1 2 3 33 33 H 1.07996 * 126.44400 * 0.02562 * 3 2 1 34 34 H 1.07995 * 126.65021 * 180.22819 * 4 3 2 35 35 H 0.96997 * 120.00221 * 0.02562 * 8 6 5 36 36 H 1.08994 * 109.47647 * 60.00612 * 9 8 6 37 37 H 1.09004 * 109.47552 * 299.99814 * 9 8 6 38 38 H 1.09004 * 113.61715 * 25.43327 * 12 10 9 39 39 H 1.09002 * 113.69160 * 254.54179 * 12 10 9 40 40 H 1.00894 * 110.99721 * 81.04637 * 15 13 12 41 41 H 1.09003 * 109.46625 * 60.00478 * 16 15 13 42 42 H 1.08993 * 109.47154 * 300.00621 * 16 15 13 43 43 H 0.96991 * 120.00493 * 0.02562 * 19 17 16 44 44 H 0.97005 * 120.00032 * 359.72836 * 23 22 20 45 45 H 1.08994 * 113.61339 * 105.46896 * 28 10 9 46 46 H 1.09002 * 113.61447 * 334.56416 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0985 0.0000 4 6 3.6251 0.6531 0.0051 5 6 3.5823 -0.7117 0.0000 6 6 4.7415 -1.6102 0.0007 7 8 5.8680 -1.1500 0.0011 8 7 4.5590 -2.9455 0.0010 9 6 5.7169 -3.8430 0.0012 10 6 5.2362 -5.2956 0.0009 11 1 4.4152 -5.4696 -0.6945 12 6 6.3753 -6.3213 -0.1217 13 6 5.6146 -7.1720 0.9091 14 1 4.8974 -7.8609 0.4628 15 7 6.4879 -7.8189 1.8976 16 6 5.8554 -9.0244 2.4497 17 6 6.7789 -9.6595 3.4571 18 8 7.8576 -9.1572 3.6922 19 7 6.4057 -10.7852 4.0974 20 6 7.2456 -11.3628 5.0142 21 1 8.2061 -10.9156 5.2237 22 6 6.8612 -12.5237 5.6741 23 7 5.6923 -13.0676 5.4196 24 14 8.0087 -13.3148 6.9177 25 1 7.3717 -14.5364 7.4719 26 1 9.2844 -13.6807 6.2513 27 1 8.2825 -12.3565 8.0184 28 6 4.9840 -5.8613 1.4085 29 8 2.2870 -1.0889 -0.0005 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5134 0.8902 32 1 -0.3634 0.5142 -0.8898 33 1 1.9613 2.1259 0.0004 34 1 4.5113 1.2702 0.0099 35 1 3.6610 -3.3123 0.0004 36 1 6.3188 -3.6594 0.8911 37 1 6.3189 -3.6597 -0.8888 38 1 7.3355 -5.9529 0.2395 39 1 6.4430 -6.7851 -1.1058 40 1 6.7418 -7.1752 2.6318 41 1 5.6555 -9.7311 1.6443 42 1 4.9184 -8.7529 2.9357 43 1 5.5430 -11.1867 3.9097 44 1 5.0962 -12.6566 4.7741 45 1 3.9273 -5.9529 1.6593 46 1 5.5639 -5.3671 2.1880 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001688898887.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:48 Heat of formation + Delta-G solvation = -67.607238 kcal Electronic energy + Delta-G solvation = -26995.992342 eV Core-core repulsion = 22886.606938 eV Total energy + Delta-G solvation = -4109.385404 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.74891 -41.00914 -40.40300 -39.78536 -36.56904 -36.07984 -34.65312 -34.18821 -33.11516 -32.96037 -29.88065 -28.29223 -27.21654 -26.59976 -25.72546 -23.55872 -22.66133 -22.48799 -21.64935 -21.36943 -20.58418 -19.97993 -19.31235 -18.14447 -17.59586 -17.31700 -16.98260 -16.70946 -16.52877 -16.39133 -16.01959 -15.68829 -15.55166 -15.13701 -15.06268 -14.59632 -14.20676 -14.11248 -14.07725 -14.00086 -13.71900 -13.68795 -13.38572 -13.34496 -12.99441 -12.86115 -12.81938 -12.68069 -12.01996 -11.91949 -11.89072 -11.71432 -11.53386 -11.35981 -11.30429 -11.09483 -10.40585 -10.33284 -10.11766 -9.50075 -9.27914 -8.93570 -6.07515 -0.06649 1.29695 1.51452 1.52206 1.54481 1.82674 2.00152 2.02170 2.10102 2.40565 2.83783 3.15928 3.37702 3.49835 3.55969 3.63877 3.87080 3.87238 3.92002 3.99131 4.14304 4.21168 4.37346 4.39925 4.48382 4.49693 4.56365 4.64713 4.70894 4.72994 4.78134 4.83730 4.87517 4.92030 5.05490 5.11498 5.15291 5.24844 5.40232 5.42052 5.60385 5.79577 5.94953 6.10112 6.34062 6.35469 6.57753 6.73952 6.91676 7.43534 7.92152 8.54248 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021677 B = 0.001543 C = 0.001501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.368564 B =18144.035543 C =18645.924950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.026 3.974 3 C -0.233 4.233 4 C -0.122 4.122 5 C -0.112 4.112 6 C 0.599 3.401 7 O -0.563 6.563 8 N -0.704 5.704 9 C 0.132 3.868 10 C -0.102 4.102 11 H 0.122 0.878 12 C -0.116 4.116 13 C 0.062 3.938 14 H 0.113 0.887 15 N -0.675 5.675 16 C 0.066 3.934 17 C 0.439 3.561 18 O -0.620 6.620 19 N -0.586 5.586 20 C -0.413 4.413 21 H 0.072 0.928 22 C -0.041 4.041 23 N -0.916 5.916 24 Si 1.134 2.866 25 H -0.271 1.271 26 H -0.274 1.274 27 H -0.273 1.273 28 C -0.160 4.160 29 O -0.169 6.169 30 H 0.085 0.915 31 H 0.108 0.892 32 H 0.110 0.890 33 H 0.182 0.818 34 H 0.160 0.840 35 H 0.416 0.584 36 H 0.059 0.941 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.344 0.656 41 H 0.106 0.894 42 H 0.068 0.932 43 H 0.385 0.615 44 H 0.260 0.740 45 H 0.081 0.919 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.578 25.364 -15.300 33.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.026 4.026 3 C -0.252 4.252 4 C -0.142 4.142 5 C -0.164 4.164 6 C 0.386 3.614 7 O -0.445 6.445 8 N -0.354 5.354 9 C 0.009 3.991 10 C -0.121 4.121 11 H 0.140 0.860 12 C -0.155 4.155 13 C -0.048 4.048 14 H 0.131 0.869 15 N -0.306 5.306 16 C -0.066 4.066 17 C 0.227 3.773 18 O -0.506 6.506 19 N -0.225 5.225 20 C -0.542 4.542 21 H 0.090 0.910 22 C -0.239 4.239 23 N -0.555 5.555 24 Si 0.953 3.047 25 H -0.196 1.196 26 H -0.199 1.199 27 H -0.199 1.199 28 C -0.200 4.200 29 O -0.066 6.066 30 H 0.104 0.896 31 H 0.127 0.873 32 H 0.129 0.871 33 H 0.200 0.800 34 H 0.177 0.823 35 H 0.253 0.747 36 H 0.077 0.923 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.102 0.898 40 H 0.163 0.837 41 H 0.124 0.876 42 H 0.086 0.914 43 H 0.219 0.781 44 H 0.070 0.930 45 H 0.100 0.900 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -14.615 24.007 -14.550 31.649 hybrid contribution -1.112 1.479 -0.448 1.904 sum -15.728 25.486 -14.998 33.494 Atomic orbital electron populations 1.20680 0.81455 1.05574 1.05853 1.23706 0.95882 0.83438 0.99607 1.21926 0.91248 1.01406 1.10586 1.22237 0.99918 0.92899 0.99177 1.21807 0.82208 0.94776 1.17560 1.16753 0.85956 0.82253 0.76421 1.90869 1.23727 1.76945 1.52931 1.45824 1.11570 1.04684 1.73338 1.21437 0.87451 0.88119 1.02115 1.22550 1.00140 0.91300 0.98129 0.86001 1.23037 0.97537 0.95303 0.99661 1.23212 0.94166 0.93632 0.93801 0.86903 1.60045 1.43166 1.08103 1.19285 1.21590 0.94361 0.94202 0.96473 1.20995 0.88908 0.82420 0.85004 1.90500 1.26111 1.65191 1.68808 1.41991 1.18591 1.24162 1.37789 1.20535 1.02003 1.11189 1.20494 0.91018 1.27819 1.00178 0.94237 1.01710 1.70974 1.08983 1.41237 1.34278 0.82629 0.72874 0.75792 0.73367 1.19604 1.19927 1.19863 1.23776 1.02119 0.97208 0.96848 1.83991 1.15491 1.35920 1.71150 0.89591 0.87341 0.87123 0.80040 0.82265 0.74671 0.92301 0.91086 0.90633 0.89849 0.83671 0.87582 0.91370 0.78059 0.92958 0.90014 0.90830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.21 10.41 71.24 0.74 0.53 16 2 C 0.03 0.30 7.31 24.97 0.18 0.48 16 3 C -0.23 -2.83 10.77 22.07 0.24 -2.60 16 4 C -0.12 -2.16 10.62 22.39 0.24 -1.92 16 5 C -0.11 -2.23 7.13 24.08 0.17 -2.06 16 6 C 0.60 13.74 7.79 86.44 0.67 14.41 16 7 O -0.56 -17.03 16.86 -4.33 -0.07 -17.10 16 8 N -0.70 -12.05 5.55 -467.10 -2.59 -14.64 16 9 C 0.13 2.31 5.51 86.38 0.48 2.78 16 10 C -0.10 -1.42 3.75 -10.27 -0.04 -1.46 16 11 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 12 C -0.12 -2.12 7.44 31.12 0.23 -1.89 16 13 C 0.06 1.27 4.18 45.44 0.19 1.46 16 14 H 0.11 1.98 7.87 -2.38 -0.02 1.96 16 15 N -0.67 -20.68 6.24 -492.82 -3.08 -23.76 16 16 C 0.07 2.19 6.01 85.56 0.51 2.70 16 17 C 0.44 20.99 7.82 87.66 0.69 21.67 16 18 O -0.62 -35.17 15.78 -3.07 -0.05 -35.21 16 19 N -0.59 -29.96 5.28 -306.98 -1.62 -31.58 16 20 C -0.41 -23.88 9.68 84.04 0.81 -23.07 16 21 H 0.07 4.47 7.16 -2.91 -0.02 4.45 16 22 C -0.04 -2.25 5.50 84.93 0.47 -1.78 16 23 N -0.92 -51.11 13.68 21.66 0.30 -50.81 16 24 Si 1.13 48.84 29.92 68.60 2.05 50.90 16 25 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 26 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 27 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 28 C -0.16 -2.72 7.25 31.12 0.23 -2.50 16 29 O -0.17 -2.72 10.40 -5.08 -0.05 -2.78 16 30 H 0.09 0.17 8.14 -2.38 -0.02 0.15 16 31 H 0.11 -0.02 8.14 -2.39 -0.02 -0.04 16 32 H 0.11 -0.08 8.14 -2.39 -0.02 -0.10 16 33 H 0.18 1.13 8.06 -2.91 -0.02 1.11 16 34 H 0.16 2.72 8.06 -2.91 -0.02 2.69 16 35 H 0.42 5.14 8.23 -92.71 -0.76 4.38 16 36 H 0.06 1.25 7.84 -2.39 -0.02 1.23 16 37 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.08 1.64 8.10 -2.38 -0.02 1.62 16 39 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.34 11.41 7.89 -89.70 -0.71 10.70 16 41 H 0.11 3.11 8.13 -2.39 -0.02 3.09 16 42 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.39 17.91 6.73 -92.72 -0.62 17.28 16 44 H 0.26 13.96 6.78 -92.70 -0.63 13.33 16 45 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 46 H 0.07 1.48 7.58 -2.39 -0.02 1.47 16 Total: -1.00 -79.51 393.78 -0.23 -79.74 By element: Atomic # 1 Polarization: 39.40 SS G_CDS: -0.92 Total: 38.48 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: 5.81 Total: 6.77 kcal Atomic # 7 Polarization: -113.80 SS G_CDS: -7.00 Total: -120.80 kcal Atomic # 8 Polarization: -54.92 SS G_CDS: -0.17 Total: -55.09 kcal Atomic # 14 Polarization: 48.84 SS G_CDS: 2.05 Total: 50.90 kcal Total: -79.51 -0.23 -79.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688898887.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.131 kcal (2) G-P(sol) polarization free energy of solvation -79.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds