Wall clock time and date at job start Tue Mar 31 2020 19:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.33653 * 125.79977 * 2 1 4 4 C 1.34213 * 110.90582 * 180.02562 * 3 2 1 5 5 C 1.34183 * 109.12557 * 359.73878 * 4 3 2 6 6 C 1.36412 * 125.79880 * 179.97438 * 2 1 3 7 7 C 1.47375 * 127.19695 * 359.96154 * 6 2 1 8 8 O 1.21619 * 119.99835 * 0.02562 * 7 6 2 9 9 N 1.34780 * 120.00422 * 179.97438 * 7 6 2 10 10 C 1.46495 * 120.00250 * 180.02562 * 9 7 6 11 11 C 1.50699 * 109.47273 * 180.02562 * 10 9 7 12 12 O 1.21285 * 119.99652 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00212 * 179.97438 * 11 10 9 14 14 C 1.46499 * 120.00005 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.46966 * 180.02562 * 14 13 11 16 16 H 1.09001 * 112.90764 * 316.25091 * 15 14 13 17 17 C 1.53779 * 113.61227 * 87.50650 * 15 14 13 18 18 C 1.53782 * 87.08376 * 139.98050 * 17 15 14 19 19 H 1.09007 * 113.69034 * 89.11986 * 18 17 15 20 20 N 1.46496 * 113.61660 * 220.02143 * 18 17 15 21 21 C 1.36945 * 119.99718 * 252.49423 * 20 18 17 22 22 H 1.07997 * 119.99756 * 359.97438 * 21 20 18 23 23 C 1.38805 * 119.99878 * 179.97438 * 21 20 18 24 24 N 1.31624 * 120.00257 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99929 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47187 * 179.97438 * 25 23 21 27 27 H 1.48494 * 109.47141 * 300.00154 * 25 23 21 28 28 H 1.48498 * 109.47018 * 60.00200 * 25 23 21 29 29 C 1.53784 * 113.61360 * 185.00148 * 15 14 13 30 30 H 1.08995 * 109.47658 * 270.00714 * 1 2 3 31 31 H 1.09004 * 109.47250 * 30.00647 * 1 2 3 32 32 H 1.09006 * 109.47039 * 150.00470 * 1 2 3 33 33 H 1.07997 * 125.43856 * 179.97438 * 4 3 2 34 34 H 1.07998 * 127.02039 * 180.27385 * 5 4 3 35 35 H 0.97000 * 119.99551 * 0.02562 * 9 7 6 36 36 H 1.09001 * 109.46816 * 60.00584 * 10 9 7 37 37 H 1.08998 * 109.47447 * 300.00879 * 10 9 7 38 38 H 0.97001 * 119.99709 * 0.02562 * 13 11 10 39 39 H 1.09001 * 109.47017 * 60.00655 * 14 13 11 40 40 H 1.08995 * 109.47523 * 300.00267 * 14 13 11 41 41 H 1.08995 * 113.61453 * 25.43169 * 17 15 14 42 42 H 1.09003 * 113.61291 * 254.52890 * 17 15 14 43 43 H 0.96996 * 120.00499 * 72.49153 * 20 18 17 44 44 H 0.97001 * 119.99885 * 179.97438 * 24 23 21 45 45 H 1.08999 * 113.61528 * 105.47129 * 29 15 14 46 46 H 1.09001 * 113.68984 * 334.58129 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2888 1.0840 0.0000 4 6 3.5859 0.7390 -0.0006 5 6 3.6849 -0.5991 0.0048 6 6 2.3049 -1.1064 0.0005 7 6 1.8740 -2.5157 0.0019 8 8 0.6889 -2.7892 0.0023 9 7 2.7930 -3.5016 0.0017 10 6 2.3646 -4.9025 0.0026 11 6 3.5763 -5.7984 0.0028 12 8 4.6883 -5.3143 0.0027 13 7 3.4243 -7.1376 0.0040 14 6 4.6023 -8.0085 0.0048 15 6 4.1548 -9.4716 0.0056 16 1 3.3369 -9.6648 0.6998 17 6 3.9163 -10.0435 -1.4018 18 6 4.5762 -11.3393 -0.9016 19 1 3.8746 -12.0441 -0.4553 20 7 5.4621 -11.9649 -1.8865 21 6 5.0780 -13.1177 -2.5181 22 1 4.1223 -13.5658 -2.2897 23 6 5.9171 -13.7102 -3.4517 24 7 7.0821 -13.1642 -3.7297 25 14 5.3935 -15.2831 -4.3127 26 1 6.4583 -15.7090 -5.2561 27 1 5.1704 -16.3492 -3.3034 28 1 4.1354 -15.0412 -5.0636 29 6 5.3169 -10.4711 0.1293 30 1 -0.3634 0.0001 1.0276 31 1 -0.3634 0.8899 -0.5139 32 1 -0.3633 -0.8901 -0.5138 33 1 4.4172 1.4284 -0.0011 34 1 4.5928 -1.1840 0.0100 35 1 3.7382 -3.2834 0.0010 36 1 1.7664 -5.1000 -0.8870 37 1 1.7674 -5.0993 0.8929 38 1 2.5348 -7.5247 0.0044 39 1 5.1999 -7.8105 0.8947 40 1 5.1999 -7.8122 -0.8853 41 1 4.4851 -9.5366 -2.1813 42 1 2.8620 -10.1593 -1.6532 43 1 6.3206 -11.5626 -2.0914 44 1 7.6686 -13.5785 -4.3818 45 1 5.3933 -10.9322 1.1140 46 1 6.2693 -10.0823 -0.2311 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688903484.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:56 Heat of formation + Delta-G solvation = -31.670031 kcal Electronic energy + Delta-G solvation = -27035.400410 eV Core-core repulsion = 22927.573360 eV Total energy + Delta-G solvation = -4107.827050 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.98545 -40.38176 -39.36032 -38.48060 -35.06546 -34.64710 -33.45714 -33.33248 -32.26184 -30.45506 -29.18456 -27.43939 -26.40239 -25.13313 -23.94218 -23.39550 -21.55514 -21.12904 -20.82416 -20.29366 -19.12556 -18.52105 -17.15246 -16.98113 -16.78864 -16.75426 -16.17560 -15.93590 -15.67633 -15.09739 -14.90333 -14.69602 -14.52107 -13.92450 -13.67400 -13.66699 -13.49528 -13.40092 -13.32244 -13.18042 -13.00243 -12.69725 -12.16394 -11.96063 -11.86637 -11.45218 -11.27325 -10.84962 -10.59356 -10.40786 -10.37451 -10.25402 -10.20557 -10.01474 -9.87147 -9.55973 -9.52366 -9.18465 -8.98261 -8.89133 -6.99162 -5.80511 -3.09660 0.95312 1.63038 2.31100 2.32966 2.59722 2.99329 3.21010 3.41738 3.46296 3.47356 4.08651 4.31514 4.43146 4.47930 4.56188 4.84024 4.89178 4.93329 4.97172 5.00356 5.09944 5.13006 5.17246 5.25750 5.41505 5.43180 5.45101 5.71783 5.74543 5.76499 5.85330 5.87685 5.96701 6.05661 6.13942 6.25479 6.30643 6.36393 6.55160 6.58255 6.77808 7.06990 7.15332 7.23713 7.66343 7.84739 7.90880 8.37993 9.49009 10.06973 10.41016 11.41694 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.026607 B = 0.001503 C = 0.001496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.099021 B =18623.252377 C =18706.551081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.082 3.918 3 O -0.176 6.176 4 C -0.038 4.038 5 C -0.186 4.186 6 C -0.249 4.249 7 C 0.595 3.405 8 O -0.544 6.544 9 N -0.711 5.711 10 C 0.101 3.899 11 C 0.506 3.494 12 O -0.541 6.541 13 N -0.717 5.717 14 C 0.132 3.868 15 C -0.128 4.128 16 H 0.089 0.911 17 C -0.161 4.161 18 C 0.165 3.835 19 H 0.076 0.924 20 N -0.713 5.713 21 C -0.246 4.246 22 H 0.071 0.929 23 C -0.012 4.012 24 N -0.932 5.932 25 Si 0.908 3.092 26 H -0.291 1.291 27 H -0.285 1.285 28 H -0.286 1.286 29 C -0.142 4.142 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.110 0.890 33 H 0.209 0.791 34 H 0.159 0.841 35 H 0.413 0.587 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.404 0.596 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.054 0.946 43 H 0.385 0.615 44 H 0.256 0.744 45 H 0.062 0.938 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.110 27.480 11.054 31.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.028 3.972 3 O -0.072 6.072 4 C -0.104 4.104 5 C -0.206 4.206 6 C -0.253 4.253 7 C 0.383 3.617 8 O -0.423 6.423 9 N -0.366 5.366 10 C -0.027 4.027 11 C 0.291 3.709 12 O -0.419 6.419 13 N -0.368 5.368 14 C 0.009 3.991 15 C -0.147 4.147 16 H 0.107 0.893 17 C -0.202 4.202 18 C 0.053 3.947 19 H 0.094 0.906 20 N -0.350 5.350 21 C -0.378 4.378 22 H 0.089 0.911 23 C -0.208 4.208 24 N -0.580 5.580 25 Si 0.739 3.261 26 H -0.217 1.217 27 H -0.212 1.212 28 H -0.212 1.212 29 C -0.182 4.182 30 H 0.108 0.892 31 H 0.097 0.903 32 H 0.128 0.872 33 H 0.226 0.774 34 H 0.177 0.823 35 H 0.251 0.749 36 H 0.120 0.880 37 H 0.118 0.882 38 H 0.239 0.761 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.097 0.903 42 H 0.073 0.927 43 H 0.219 0.781 44 H 0.066 0.934 45 H 0.080 0.920 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -11.259 27.682 10.955 31.829 hybrid contribution 0.446 -0.989 -0.602 1.241 sum -10.813 26.693 10.353 30.604 Atomic orbital electron populations 1.20638 0.83623 1.05208 1.04511 1.22845 0.94175 0.83069 0.97066 1.83784 1.17249 1.34913 1.71266 1.23889 0.83459 0.96426 1.06594 1.22943 0.96728 0.94648 1.06246 1.21031 0.93527 0.93485 1.17260 1.17123 0.85141 0.83718 0.75677 1.90766 1.16480 1.84085 1.50983 1.45455 1.11107 1.04487 1.75515 1.21074 0.95270 0.81219 1.05103 1.20458 0.90587 0.83363 0.76491 1.90706 1.26327 1.74850 1.50025 1.45955 1.11079 1.05441 1.74344 1.21503 0.86839 0.88448 1.02328 1.22652 1.00116 0.91916 1.00017 0.89251 1.23961 1.00872 1.00876 0.94537 1.21521 0.92525 0.90952 0.89673 0.90632 1.42403 1.19543 1.27866 1.45222 1.19262 1.01449 1.00387 1.16653 0.91129 1.24771 0.96589 0.99376 1.00111 1.69652 1.10091 1.41105 1.37148 0.86259 0.77336 0.83279 0.79247 1.21672 1.21217 1.21244 1.23453 0.97439 0.96863 1.00455 0.89213 0.90290 0.87204 0.77409 0.82308 0.74902 0.88048 0.88153 0.76141 0.91536 0.90983 0.90346 0.92698 0.78069 0.93385 0.91966 0.90099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 9.89 36.01 0.36 -0.19 16 2 C 0.08 0.71 7.37 -34.97 -0.26 0.46 16 3 O -0.18 -1.43 10.52 7.66 0.08 -1.35 16 4 C -0.04 -0.24 12.03 29.30 0.35 0.11 16 5 C -0.19 -1.41 10.60 -37.45 -0.40 -1.81 16 6 C -0.25 -2.40 6.31 -103.28 -0.65 -3.05 16 7 C 0.59 6.47 7.81 -12.54 -0.10 6.37 16 8 O -0.54 -6.92 14.85 5.26 0.08 -6.84 16 9 N -0.71 -6.96 5.52 -62.58 -0.35 -7.31 16 10 C 0.10 0.88 6.15 -5.20 -0.03 0.85 16 11 C 0.51 5.45 7.90 -10.99 -0.09 5.36 16 12 O -0.54 -7.68 15.67 5.55 0.09 -7.59 16 13 N -0.72 -6.96 5.56 -60.30 -0.33 -7.29 16 14 C 0.13 1.56 5.51 -4.04 -0.02 1.54 16 15 C -0.13 -1.57 3.75 -89.81 -0.34 -1.91 16 16 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 17 C -0.16 -2.53 7.43 -25.92 -0.19 -2.73 16 18 C 0.17 3.10 4.48 -67.12 -0.30 2.80 16 19 H 0.08 1.40 8.10 -51.93 -0.42 0.98 16 20 N -0.71 -17.48 5.40 -52.64 -0.28 -17.76 16 21 C -0.25 -6.74 9.97 -15.06 -0.15 -6.89 16 22 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 23 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 24 N -0.93 -27.93 13.06 55.49 0.72 -27.21 16 25 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16 26 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 27 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 28 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 29 C -0.14 -2.16 7.39 -25.92 -0.19 -2.35 16 30 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.11 0.86 6.49 -51.93 -0.34 0.52 16 33 H 0.21 0.49 8.06 -52.49 -0.42 0.07 16 34 H 0.16 0.94 7.74 -52.49 -0.41 0.54 16 35 H 0.41 3.95 6.61 -40.82 -0.27 3.68 16 36 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.40 2.89 8.47 -40.82 -0.35 2.55 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.07 0.99 7.84 -51.93 -0.41 0.59 16 41 H 0.08 1.37 7.89 -51.93 -0.41 0.96 16 42 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.39 10.08 7.92 -40.82 -0.32 9.76 16 44 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 45 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.08 1.30 8.08 -51.93 -0.42 0.88 16 LS Contribution 392.03 15.07 5.91 5.91 Total: -1.00 -34.39 392.03 -7.91 -42.30 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: -6.69 Total: 11.92 kcal Atomic # 6 Polarization: 0.22 SS G_CDS: -2.11 Total: -1.89 kcal Atomic # 7 Polarization: -59.33 SS G_CDS: -0.24 Total: -59.57 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: 0.25 Total: -15.78 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.39 -7.91 -42.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688903484.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.627 kcal (2) G-P(sol) polarization free energy of solvation -34.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds