Wall clock time and date at job start Tue Mar 31 2020 19:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.33653 * 125.79977 * 2 1 4 4 C 1.34213 * 110.90582 * 180.02562 * 3 2 1 5 5 C 1.34183 * 109.12557 * 359.73878 * 4 3 2 6 6 C 1.36412 * 125.79880 * 179.97438 * 2 1 3 7 7 C 1.47375 * 127.19695 * 359.96154 * 6 2 1 8 8 O 1.21619 * 119.99835 * 0.02562 * 7 6 2 9 9 N 1.34780 * 120.00422 * 179.97438 * 7 6 2 10 10 C 1.46495 * 120.00250 * 180.02562 * 9 7 6 11 11 C 1.50699 * 109.47273 * 180.02562 * 10 9 7 12 12 O 1.21285 * 119.99652 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00212 * 179.97438 * 11 10 9 14 14 C 1.46499 * 120.00005 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.46966 * 180.02562 * 14 13 11 16 16 H 1.09001 * 112.90764 * 316.25091 * 15 14 13 17 17 C 1.53779 * 113.61227 * 87.50650 * 15 14 13 18 18 C 1.53782 * 87.08376 * 139.98050 * 17 15 14 19 19 H 1.09007 * 113.69034 * 89.11986 * 18 17 15 20 20 N 1.46496 * 113.61660 * 220.02143 * 18 17 15 21 21 C 1.36945 * 119.99718 * 252.49423 * 20 18 17 22 22 H 1.07997 * 119.99756 * 359.97438 * 21 20 18 23 23 C 1.38805 * 119.99878 * 179.97438 * 21 20 18 24 24 N 1.31624 * 120.00257 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99929 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47187 * 179.97438 * 25 23 21 27 27 H 1.48494 * 109.47141 * 300.00154 * 25 23 21 28 28 H 1.48498 * 109.47018 * 60.00200 * 25 23 21 29 29 C 1.53784 * 113.61360 * 185.00148 * 15 14 13 30 30 H 1.08995 * 109.47658 * 270.00714 * 1 2 3 31 31 H 1.09004 * 109.47250 * 30.00647 * 1 2 3 32 32 H 1.09006 * 109.47039 * 150.00470 * 1 2 3 33 33 H 1.07997 * 125.43856 * 179.97438 * 4 3 2 34 34 H 1.07998 * 127.02039 * 180.27385 * 5 4 3 35 35 H 0.97000 * 119.99551 * 0.02562 * 9 7 6 36 36 H 1.09001 * 109.46816 * 60.00584 * 10 9 7 37 37 H 1.08998 * 109.47447 * 300.00879 * 10 9 7 38 38 H 0.97001 * 119.99709 * 0.02562 * 13 11 10 39 39 H 1.09001 * 109.47017 * 60.00655 * 14 13 11 40 40 H 1.08995 * 109.47523 * 300.00267 * 14 13 11 41 41 H 1.08995 * 113.61453 * 25.43169 * 17 15 14 42 42 H 1.09003 * 113.61291 * 254.52890 * 17 15 14 43 43 H 0.96996 * 120.00499 * 72.49153 * 20 18 17 44 44 H 0.97001 * 119.99885 * 179.97438 * 24 23 21 45 45 H 1.08999 * 113.61528 * 105.47129 * 29 15 14 46 46 H 1.09001 * 113.68984 * 334.58129 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2888 1.0840 0.0000 4 6 3.5859 0.7390 -0.0006 5 6 3.6849 -0.5991 0.0048 6 6 2.3049 -1.1064 0.0005 7 6 1.8740 -2.5157 0.0019 8 8 0.6889 -2.7892 0.0023 9 7 2.7930 -3.5016 0.0017 10 6 2.3646 -4.9025 0.0026 11 6 3.5763 -5.7984 0.0028 12 8 4.6883 -5.3143 0.0027 13 7 3.4243 -7.1376 0.0040 14 6 4.6023 -8.0085 0.0048 15 6 4.1548 -9.4716 0.0056 16 1 3.3369 -9.6648 0.6998 17 6 3.9163 -10.0435 -1.4018 18 6 4.5762 -11.3393 -0.9016 19 1 3.8746 -12.0441 -0.4553 20 7 5.4621 -11.9649 -1.8865 21 6 5.0780 -13.1177 -2.5181 22 1 4.1223 -13.5658 -2.2897 23 6 5.9171 -13.7102 -3.4517 24 7 7.0821 -13.1642 -3.7297 25 14 5.3935 -15.2831 -4.3127 26 1 6.4583 -15.7090 -5.2561 27 1 5.1704 -16.3492 -3.3034 28 1 4.1354 -15.0412 -5.0636 29 6 5.3169 -10.4711 0.1293 30 1 -0.3634 0.0001 1.0276 31 1 -0.3634 0.8899 -0.5139 32 1 -0.3633 -0.8901 -0.5138 33 1 4.4172 1.4284 -0.0011 34 1 4.5928 -1.1840 0.0100 35 1 3.7382 -3.2834 0.0010 36 1 1.7664 -5.1000 -0.8870 37 1 1.7674 -5.0993 0.8929 38 1 2.5348 -7.5247 0.0044 39 1 5.1999 -7.8105 0.8947 40 1 5.1999 -7.8122 -0.8853 41 1 4.4851 -9.5366 -2.1813 42 1 2.8620 -10.1593 -1.6532 43 1 6.3206 -11.5626 -2.0914 44 1 7.6686 -13.5785 -4.3818 45 1 5.3933 -10.9322 1.1140 46 1 6.2693 -10.0823 -0.2311 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001688903484.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:55 Heat of formation + Delta-G solvation = -57.146329 kcal Electronic energy + Delta-G solvation = -27036.505145 eV Core-core repulsion = 22927.573360 eV Total energy + Delta-G solvation = -4108.931785 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.56098 -41.26467 -40.30923 -39.67407 -36.17637 -35.57831 -35.04481 -34.05604 -32.79743 -32.23398 -30.18319 -28.28123 -27.26853 -26.44149 -25.72523 -24.15539 -22.52233 -22.12308 -21.67317 -21.06690 -20.42369 -19.23265 -18.98419 -17.86221 -17.62089 -17.40489 -16.98522 -16.80419 -16.71599 -16.34999 -16.08657 -15.72764 -15.52589 -15.26828 -14.99361 -14.61137 -14.53142 -14.16107 -14.04931 -13.83611 -13.76310 -13.62360 -13.37711 -13.21948 -13.00273 -12.90681 -12.69201 -12.61652 -12.24769 -12.08245 -11.61785 -11.54794 -11.21924 -11.16788 -10.96109 -10.88572 -10.78878 -10.32525 -10.10279 -9.55260 -8.96719 -7.94063 -5.22275 0.28657 1.09125 1.45207 1.47728 1.50504 1.56593 1.66069 1.94130 2.24485 2.42744 2.57365 3.37593 3.53017 3.59704 3.73412 3.75966 3.80038 3.87385 3.95246 4.27060 4.30289 4.31792 4.36318 4.37979 4.43568 4.57539 4.62164 4.63661 4.75136 4.77167 4.87706 4.98663 5.00391 5.06555 5.14680 5.23203 5.26018 5.33422 5.35709 5.42435 5.53302 5.74489 6.00480 6.28235 6.38671 6.44027 7.06131 7.09888 7.33814 8.12794 8.33963 9.29132 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.026607 B = 0.001503 C = 0.001496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.099021 B =18623.252377 C =18706.551081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.073 3.927 3 O -0.181 6.181 4 C -0.029 4.029 5 C -0.203 4.203 6 C -0.276 4.276 7 C 0.592 3.408 8 O -0.568 6.568 9 N -0.710 5.710 10 C 0.105 3.895 11 C 0.509 3.491 12 O -0.578 6.578 13 N -0.705 5.705 14 C 0.138 3.862 15 C -0.094 4.094 16 H 0.124 0.876 17 C -0.154 4.154 18 C 0.140 3.860 19 H 0.080 0.920 20 N -0.730 5.730 21 C -0.244 4.244 22 H 0.079 0.921 23 C -0.079 4.079 24 N -0.972 5.972 25 Si 0.973 3.027 26 H -0.298 1.298 27 H -0.276 1.276 28 H -0.278 1.278 29 C -0.137 4.137 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.248 0.752 34 H 0.170 0.830 35 H 0.413 0.587 36 H 0.113 0.887 37 H 0.119 0.881 38 H 0.420 0.580 39 H 0.069 0.931 40 H 0.049 0.951 41 H 0.055 0.945 42 H 0.068 0.932 43 H 0.372 0.628 44 H 0.250 0.750 45 H 0.078 0.922 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.726 28.398 12.271 33.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.020 3.980 3 O -0.077 6.077 4 C -0.093 4.093 5 C -0.222 4.222 6 C -0.280 4.280 7 C 0.382 3.618 8 O -0.450 6.450 9 N -0.364 5.364 10 C -0.022 4.022 11 C 0.295 3.705 12 O -0.458 6.458 13 N -0.357 5.357 14 C 0.015 3.985 15 C -0.113 4.113 16 H 0.142 0.858 17 C -0.194 4.194 18 C 0.031 3.969 19 H 0.098 0.902 20 N -0.368 5.368 21 C -0.376 4.376 22 H 0.097 0.903 23 C -0.271 4.271 24 N -0.622 5.622 25 Si 0.802 3.198 26 H -0.225 1.225 27 H -0.202 1.202 28 H -0.204 1.204 29 C -0.176 4.176 30 H 0.117 0.883 31 H 0.117 0.883 32 H 0.114 0.886 33 H 0.263 0.737 34 H 0.188 0.812 35 H 0.252 0.748 36 H 0.130 0.870 37 H 0.136 0.864 38 H 0.257 0.743 39 H 0.088 0.912 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.086 0.914 43 H 0.203 0.797 44 H 0.059 0.941 45 H 0.097 0.903 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.945 28.601 12.216 33.687 hybrid contribution 0.933 -1.212 -0.921 1.785 sum -12.011 27.389 11.295 31.969 Atomic orbital electron populations 1.20663 0.82570 1.05418 1.05136 1.23195 0.95052 0.83087 0.96670 1.83803 1.18015 1.34742 1.71174 1.24651 0.83511 0.96749 1.04431 1.23155 0.96325 0.95453 1.07241 1.21185 0.94969 0.93164 1.18692 1.17328 0.84885 0.84366 0.75246 1.90743 1.17318 1.84541 1.52374 1.45487 1.11037 1.04822 1.75074 1.21141 0.94315 0.80270 1.06450 1.20750 0.90572 0.83621 0.75540 1.90697 1.27873 1.75506 1.51733 1.45783 1.11281 1.04990 1.73686 1.21266 0.87408 0.88409 1.01453 1.22474 0.99478 0.91363 0.98033 0.85834 1.23730 1.00834 0.98892 0.95991 1.21989 0.92933 0.92011 0.89961 0.90161 1.42626 1.19943 1.27652 1.46542 1.19710 1.01307 1.00799 1.15806 0.90306 1.25587 0.96956 1.02843 1.01705 1.69819 1.11403 1.42766 1.38254 0.85214 0.76751 0.79757 0.78063 1.22458 1.20250 1.20428 1.23329 0.97572 0.96825 0.99906 0.88313 0.88344 0.88636 0.73653 0.81224 0.74835 0.86970 0.86370 0.74274 0.91233 0.93267 0.92628 0.91354 0.79670 0.94144 0.90327 0.91481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.02 9.89 71.24 0.70 -0.32 16 2 C 0.07 1.24 7.37 25.26 0.19 1.42 16 3 O -0.18 -2.69 10.52 4.49 0.05 -2.64 16 4 C -0.03 -0.31 12.03 66.89 0.80 0.50 16 5 C -0.20 -2.88 10.60 23.65 0.25 -2.62 16 6 C -0.28 -5.22 6.31 -18.99 -0.12 -5.34 16 7 C 0.59 12.71 7.81 86.65 0.68 13.38 16 8 O -0.57 -14.32 14.85 -4.09 -0.06 -14.38 16 9 N -0.71 -13.44 5.52 -470.15 -2.60 -16.03 16 10 C 0.11 1.67 6.15 85.63 0.53 2.20 16 11 C 0.51 10.21 7.90 87.66 0.69 10.90 16 12 O -0.58 -16.04 15.67 -3.05 -0.05 -16.09 16 13 N -0.71 -12.06 5.56 -463.07 -2.57 -14.63 16 14 C 0.14 3.04 5.51 86.38 0.48 3.52 16 15 C -0.09 -2.08 3.75 -10.27 -0.04 -2.12 16 16 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 17 C -0.15 -4.61 7.43 31.12 0.23 -4.38 16 18 C 0.14 5.13 4.48 45.52 0.20 5.33 16 19 H 0.08 2.84 8.10 -2.38 -0.02 2.82 16 20 N -0.73 -36.25 5.40 -320.44 -1.73 -37.99 16 21 C -0.24 -13.41 9.97 84.03 0.84 -12.57 16 22 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 23 C -0.08 -4.52 5.50 84.86 0.47 -4.06 16 24 N -0.97 -59.75 13.06 21.65 0.28 -59.47 16 25 Si 0.97 45.88 29.55 68.60 2.03 47.91 16 26 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 27 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 28 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 29 C -0.14 -3.95 7.39 31.12 0.23 -3.72 16 30 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.10 1.50 6.49 -2.38 -0.02 1.48 16 33 H 0.25 0.40 8.06 -2.91 -0.02 0.38 16 34 H 0.17 1.87 7.74 -2.91 -0.02 1.85 16 35 H 0.41 7.78 6.61 -92.71 -0.61 7.17 16 36 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.42 4.60 8.47 -92.71 -0.79 3.82 16 39 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.05 1.34 7.84 -2.39 -0.02 1.32 16 41 H 0.05 1.94 7.89 -2.39 -0.02 1.93 16 42 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.37 20.09 7.92 -92.71 -0.73 19.36 16 44 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 45 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 46 H 0.07 2.14 8.08 -2.39 -0.02 2.13 16 Total: -1.00 -76.10 392.03 0.38 -75.72 By element: Atomic # 1 Polarization: 36.58 SS G_CDS: -1.10 Total: 35.48 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: 6.13 Total: 2.12 kcal Atomic # 7 Polarization: -121.50 SS G_CDS: -6.62 Total: -128.12 kcal Atomic # 8 Polarization: -33.05 SS G_CDS: -0.06 Total: -33.11 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -76.10 0.38 -75.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688903484.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.572 kcal (2) G-P(sol) polarization free energy of solvation -76.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds