Wall clock time and date at job start Tue Mar 31 2020 20:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.47079 * 2 1 4 4 O 1.33651 * 125.80249 * 270.00503 * 3 2 1 5 5 C 1.34222 * 110.90793 * 179.97438 * 4 3 2 6 6 C 1.34175 * 109.12087 * 359.74854 * 5 4 3 7 7 C 1.36420 * 125.80003 * 89.99765 * 3 2 1 8 8 C 1.47377 * 127.18997 * 359.97301 * 7 3 2 9 9 O 1.21614 * 120.00210 * 359.97438 * 8 7 3 10 10 N 1.34786 * 119.99528 * 179.97438 * 8 7 3 11 11 C 1.46498 * 119.99494 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.46844 * 179.97438 * 11 10 8 13 13 H 1.09002 * 112.78386 * 75.81337 * 12 11 10 14 14 C 1.53516 * 113.48109 * 206.61866 * 12 11 10 15 15 C 1.53512 * 83.57456 * 140.79338 * 14 12 11 16 16 N 1.47478 * 87.93387 * 333.97794 * 15 14 12 17 17 C 1.46895 * 110.99832 * 138.70276 * 16 15 14 18 18 C 1.50700 * 109.47048 * 91.52550 * 17 16 15 19 19 O 1.21292 * 119.99931 * 0.02562 * 18 17 16 20 20 N 1.34784 * 119.99961 * 179.97438 * 18 17 16 21 21 C 1.37099 * 119.99504 * 180.02562 * 20 18 17 22 22 H 1.07999 * 120.00446 * 359.97438 * 21 20 18 23 23 C 1.38955 * 119.99362 * 180.02562 * 21 20 18 24 24 N 1.31406 * 120.00245 * 359.71960 * 23 21 20 25 25 Si 1.86803 * 119.99625 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47239 * 59.99759 * 25 23 21 27 27 H 1.48495 * 109.47002 * 179.97438 * 25 23 21 28 28 H 1.48492 * 109.47205 * 299.99687 * 25 23 21 29 29 H 1.09000 * 109.47070 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.47140 * 299.99312 * 1 2 3 31 31 H 1.08993 * 109.47460 * 60.00007 * 1 2 3 32 32 H 1.08994 * 109.46834 * 240.00207 * 2 1 3 33 33 H 1.09000 * 109.47233 * 120.00273 * 2 1 3 34 34 H 1.07995 * 125.43629 * 179.97438 * 5 4 3 35 35 H 1.08003 * 127.02020 * 180.26761 * 6 5 4 36 36 H 0.96996 * 119.99742 * 359.97438 * 10 8 7 37 37 H 1.09005 * 109.47304 * 59.99652 * 11 10 8 38 38 H 1.08998 * 109.47680 * 299.99479 * 11 10 8 39 39 H 1.09001 * 114.16555 * 27.14450 * 14 12 11 40 40 H 1.09003 * 114.16647 * 254.44417 * 14 12 11 41 41 H 1.08997 * 113.47281 * 219.20609 * 15 14 12 42 42 H 1.09004 * 113.52447 * 88.75888 * 15 14 12 43 43 H 1.09004 * 109.47549 * 331.52566 * 17 16 15 44 44 H 1.09005 * 109.47114 * 211.52642 * 17 16 15 45 45 H 0.96999 * 120.00044 * 359.97438 * 20 18 17 46 46 H 0.97000 * 120.00281 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2928 2.1580 -1.0840 5 6 2.7247 3.3811 -0.7390 6 6 2.7522 3.4763 0.5991 7 6 2.2983 2.1732 1.1065 8 6 2.1540 1.7669 2.5157 9 8 1.7580 0.6500 2.7892 10 7 2.4609 2.6333 3.5016 11 6 2.3169 2.2296 4.9025 12 6 2.7285 3.3890 5.8121 13 1 1.9730 4.1730 5.8647 14 6 3.2366 2.9362 7.1882 15 6 4.2549 4.0682 6.9930 16 7 4.0853 3.8979 5.5379 17 6 4.0321 5.1991 4.8583 18 6 5.4207 5.5998 4.4312 19 8 6.3619 4.8727 4.6693 20 7 5.6165 6.7657 3.7839 21 6 6.8797 7.1299 3.3950 22 1 7.7179 6.4830 3.6077 23 6 7.0817 8.3322 2.7281 24 7 6.0612 9.1173 2.4654 25 14 8.8029 8.8289 2.1988 26 1 9.3494 7.8071 1.2700 27 1 8.7491 10.1439 1.5112 28 1 9.6784 8.9302 3.3939 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.0020 4.1648 -1.4283 35 1 3.0492 4.3342 1.1841 36 1 2.7770 3.5240 3.2834 37 1 2.9557 1.3688 5.1001 38 1 1.2783 1.9641 5.0993 39 1 3.6747 1.9381 7.1958 40 1 2.5315 3.1054 8.0020 41 1 5.2553 3.8179 7.3459 42 1 3.9077 5.0339 7.3606 43 1 3.6310 5.9491 5.5400 44 1 3.3894 5.1247 3.9810 45 1 4.8637 7.3466 3.5926 46 1 6.2021 9.9564 1.9995 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699618096.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:46 Heat of formation + Delta-G solvation = -23.497946 kcal Electronic energy + Delta-G solvation = -29096.586631 eV Core-core repulsion = 24989.113949 eV Total energy + Delta-G solvation = -4107.472681 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.60485 -40.48567 -39.04387 -37.78537 -34.69540 -33.99490 -33.92388 -32.75243 -31.41697 -30.69896 -29.08537 -28.21284 -25.86909 -24.43299 -23.79736 -23.27319 -22.53317 -20.86602 -20.09392 -19.44208 -19.32366 -17.94953 -17.93031 -16.37839 -16.20688 -16.08794 -15.96398 -15.59984 -15.05063 -14.89964 -14.68590 -14.51103 -14.42439 -14.02587 -13.80847 -13.64425 -13.40081 -13.00859 -12.74761 -12.70675 -12.46612 -12.38736 -11.97949 -11.72117 -11.63592 -11.55543 -11.34386 -11.13594 -11.08377 -10.90064 -10.55181 -10.47146 -10.24423 -9.87909 -9.83258 -9.52800 -9.00748 -8.85029 -8.59515 -8.26025 -8.00129 -6.45454 -3.86194 1.34555 2.06084 2.74138 3.17096 3.23025 3.23388 3.27869 3.43341 3.83654 3.92322 4.19315 4.40620 4.42154 4.72584 4.76815 4.80062 4.95023 4.98066 5.00787 5.10776 5.15509 5.28266 5.29442 5.35064 5.42683 5.47208 5.58216 5.61060 5.63789 5.71202 5.76333 5.86227 5.90572 5.93917 5.96053 6.09328 6.15351 6.20408 6.27860 6.40452 6.57394 6.98741 7.13073 7.51569 7.58721 8.01821 8.29242 8.57932 9.14823 9.49884 10.02436 10.72170 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009280 B = 0.003571 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3016.498155 B = 7839.096694 C =10377.203679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.051 4.051 3 C 0.076 3.924 4 O -0.176 6.176 5 C -0.037 4.037 6 C -0.184 4.184 7 C -0.242 4.242 8 C 0.592 3.408 9 O -0.549 6.549 10 N -0.713 5.713 11 C 0.143 3.857 12 C 0.003 3.997 13 H 0.082 0.918 14 C -0.133 4.133 15 C 0.005 3.995 16 N -0.432 5.432 17 C 0.007 3.993 18 C 0.445 3.555 19 O -0.571 6.571 20 N -0.566 5.566 21 C -0.299 4.299 22 H 0.102 0.898 23 C 0.023 3.977 24 N -0.903 5.903 25 Si 0.929 3.071 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.274 1.274 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.080 0.920 33 H 0.113 0.887 34 H 0.210 0.790 35 H 0.158 0.842 36 H 0.402 0.598 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.096 0.904 40 H 0.077 0.923 41 H 0.090 0.910 42 H 0.068 0.932 43 H 0.061 0.939 44 H 0.079 0.921 45 H 0.391 0.609 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.675 -10.911 -0.557 17.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.088 4.088 3 C 0.022 3.978 4 O -0.072 6.072 5 C -0.103 4.103 6 C -0.203 4.203 7 C -0.247 4.247 8 C 0.380 3.620 9 O -0.429 6.429 10 N -0.365 5.365 11 C 0.019 3.981 12 C -0.107 4.107 13 H 0.100 0.900 14 C -0.171 4.171 15 C -0.124 4.124 16 N -0.155 5.155 17 C -0.125 4.125 18 C 0.230 3.770 19 O -0.454 6.454 20 N -0.203 5.203 21 C -0.428 4.428 22 H 0.120 0.880 23 C -0.178 4.178 24 N -0.544 5.544 25 Si 0.756 3.244 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.099 0.901 33 H 0.131 0.869 34 H 0.226 0.774 35 H 0.175 0.825 36 H 0.238 0.762 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.115 0.885 40 H 0.096 0.904 41 H 0.109 0.891 42 H 0.086 0.914 43 H 0.079 0.921 44 H 0.097 0.903 45 H 0.224 0.776 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.855 -12.450 -0.995 17.923 hybrid contribution 0.175 2.319 -0.070 2.326 sum -12.680 -10.132 -1.065 16.265 Atomic orbital electron populations 1.21680 0.93476 1.02463 1.02327 1.20365 0.96851 0.86528 1.05018 1.22799 0.97425 0.94351 0.83197 1.83757 1.65294 1.23255 1.34933 1.23902 1.03938 0.85885 0.96545 1.22952 1.04832 0.97795 0.94757 1.21148 1.13762 0.95920 0.93839 1.17166 0.76788 0.84260 0.83786 1.90720 1.47769 1.20247 1.84168 1.45726 1.67414 1.17417 1.05914 1.21310 1.00900 0.96788 0.79108 1.23793 0.93406 0.97772 0.95774 0.89980 1.23159 0.98444 1.00253 0.95233 1.23738 1.01218 0.97708 0.89715 1.68870 1.16351 1.20823 1.09451 1.22568 0.98206 0.92043 0.99670 1.19601 0.89439 0.83543 0.84424 1.90543 1.42867 1.52856 1.59139 1.41859 1.09993 1.17771 1.50691 1.19640 0.85887 1.03660 1.33626 0.88031 1.25230 0.99338 0.95930 0.97307 1.69593 1.30562 1.12528 1.41750 0.85942 0.81867 0.77639 0.78949 1.19874 1.20965 1.19919 0.91473 0.91900 0.92707 0.90141 0.86858 0.77373 0.82463 0.76239 0.90683 0.91214 0.88518 0.90417 0.89132 0.91397 0.92086 0.90325 0.77627 0.91837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.89 37.16 0.37 -0.97 16 2 C -0.05 -0.55 5.94 -27.88 -0.17 -0.71 16 3 C 0.08 1.00 6.63 -34.96 -0.23 0.76 16 4 O -0.18 -2.24 10.52 7.64 0.08 -2.16 16 5 C -0.04 -0.44 12.03 29.30 0.35 -0.08 16 6 C -0.18 -2.45 10.60 -37.46 -0.40 -2.85 16 7 C -0.24 -3.50 6.31 -103.28 -0.65 -4.15 16 8 C 0.59 9.08 7.81 -12.54 -0.10 8.98 16 9 O -0.55 -9.19 14.85 5.27 0.08 -9.11 16 10 N -0.71 -9.98 5.46 -61.40 -0.34 -10.32 16 11 C 0.14 1.78 5.82 -4.04 -0.02 1.76 16 12 C 0.00 0.03 3.25 -71.43 -0.23 -0.20 16 13 H 0.08 0.84 7.91 -51.93 -0.41 0.42 16 14 C -0.13 -1.37 8.00 -26.20 -0.21 -1.58 16 15 C 0.01 0.07 7.69 -7.55 -0.06 0.01 16 16 N -0.43 -6.74 5.39 -237.94 -1.28 -8.03 16 17 C 0.01 0.12 5.04 -4.98 -0.03 0.10 16 18 C 0.45 10.21 7.83 -10.98 -0.09 10.12 16 19 O -0.57 -15.46 16.01 5.55 0.09 -15.37 16 20 N -0.57 -13.85 5.29 -10.96 -0.06 -13.91 16 21 C -0.30 -8.16 9.68 -14.93 -0.14 -8.31 16 22 H 0.10 2.94 7.16 -52.49 -0.38 2.56 16 23 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 24 N -0.90 -23.91 13.05 55.50 0.72 -23.19 16 25 Si 0.93 20.78 29.55 -169.99 -5.02 15.75 16 26 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 27 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 28 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.11 1.37 6.49 -51.93 -0.34 1.04 16 34 H 0.21 1.72 8.06 -52.49 -0.42 1.30 16 35 H 0.16 1.99 7.74 -52.48 -0.41 1.59 16 36 H 0.40 5.56 5.37 -40.82 -0.22 5.34 16 37 H 0.07 1.02 7.87 -51.93 -0.41 0.61 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.10 1.00 7.94 -51.93 -0.41 0.59 16 40 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 42 H 0.07 0.84 7.44 -51.93 -0.39 0.45 16 43 H 0.06 0.90 7.35 -51.93 -0.38 0.52 16 44 H 0.08 1.15 6.25 -51.93 -0.32 0.83 16 45 H 0.39 9.07 7.90 -40.82 -0.32 8.74 16 46 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 386.23 15.07 5.82 5.82 Total: -1.00 -33.51 386.23 -8.11 -41.61 By element: Atomic # 1 Polarization: 22.01 SS G_CDS: -6.50 Total: 15.50 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: -1.70 Total: 3.39 kcal Atomic # 7 Polarization: -54.49 SS G_CDS: -0.95 Total: -55.44 kcal Atomic # 8 Polarization: -26.89 SS G_CDS: 0.25 Total: -26.64 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.51 -8.11 -41.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699618096.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.115 kcal (2) G-P(sol) polarization free energy of solvation -33.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds