Wall clock time and date at job start Tue Mar 31 2020 20:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.47079 * 2 1 4 4 O 1.33651 * 125.80249 * 270.00503 * 3 2 1 5 5 C 1.34222 * 110.90793 * 179.97438 * 4 3 2 6 6 C 1.34175 * 109.12087 * 359.74854 * 5 4 3 7 7 C 1.36420 * 125.80003 * 89.99765 * 3 2 1 8 8 C 1.47377 * 127.18997 * 359.97301 * 7 3 2 9 9 O 1.21614 * 120.00210 * 359.97438 * 8 7 3 10 10 N 1.34786 * 119.99528 * 179.97438 * 8 7 3 11 11 C 1.46498 * 119.99494 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.46844 * 179.97438 * 11 10 8 13 13 H 1.09002 * 112.78386 * 75.81337 * 12 11 10 14 14 C 1.53516 * 113.48109 * 206.61866 * 12 11 10 15 15 C 1.53512 * 83.57456 * 140.79338 * 14 12 11 16 16 N 1.47478 * 87.93387 * 333.97794 * 15 14 12 17 17 C 1.46895 * 110.99832 * 138.70276 * 16 15 14 18 18 C 1.50700 * 109.47048 * 91.52550 * 17 16 15 19 19 O 1.21292 * 119.99931 * 0.02562 * 18 17 16 20 20 N 1.34784 * 119.99961 * 179.97438 * 18 17 16 21 21 C 1.37099 * 119.99504 * 180.02562 * 20 18 17 22 22 H 1.07999 * 120.00446 * 359.97438 * 21 20 18 23 23 C 1.38955 * 119.99362 * 180.02562 * 21 20 18 24 24 N 1.31406 * 120.00245 * 359.71960 * 23 21 20 25 25 Si 1.86803 * 119.99625 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47239 * 59.99759 * 25 23 21 27 27 H 1.48495 * 109.47002 * 179.97438 * 25 23 21 28 28 H 1.48492 * 109.47205 * 299.99687 * 25 23 21 29 29 H 1.09000 * 109.47070 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.47140 * 299.99312 * 1 2 3 31 31 H 1.08993 * 109.47460 * 60.00007 * 1 2 3 32 32 H 1.08994 * 109.46834 * 240.00207 * 2 1 3 33 33 H 1.09000 * 109.47233 * 120.00273 * 2 1 3 34 34 H 1.07995 * 125.43629 * 179.97438 * 5 4 3 35 35 H 1.08003 * 127.02020 * 180.26761 * 6 5 4 36 36 H 0.96996 * 119.99742 * 359.97438 * 10 8 7 37 37 H 1.09005 * 109.47304 * 59.99652 * 11 10 8 38 38 H 1.08998 * 109.47680 * 299.99479 * 11 10 8 39 39 H 1.09001 * 114.16555 * 27.14450 * 14 12 11 40 40 H 1.09003 * 114.16647 * 254.44417 * 14 12 11 41 41 H 1.08997 * 113.47281 * 219.20609 * 15 14 12 42 42 H 1.09004 * 113.52447 * 88.75888 * 15 14 12 43 43 H 1.09004 * 109.47549 * 331.52566 * 17 16 15 44 44 H 1.09005 * 109.47114 * 211.52642 * 17 16 15 45 45 H 0.96999 * 120.00044 * 359.97438 * 20 18 17 46 46 H 0.97000 * 120.00281 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2928 2.1580 -1.0840 5 6 2.7247 3.3811 -0.7390 6 6 2.7522 3.4763 0.5991 7 6 2.2983 2.1732 1.1065 8 6 2.1540 1.7669 2.5157 9 8 1.7580 0.6500 2.7892 10 7 2.4609 2.6333 3.5016 11 6 2.3169 2.2296 4.9025 12 6 2.7285 3.3890 5.8121 13 1 1.9730 4.1730 5.8647 14 6 3.2366 2.9362 7.1882 15 6 4.2549 4.0682 6.9930 16 7 4.0853 3.8979 5.5379 17 6 4.0321 5.1991 4.8583 18 6 5.4207 5.5998 4.4312 19 8 6.3619 4.8727 4.6693 20 7 5.6165 6.7657 3.7839 21 6 6.8797 7.1299 3.3950 22 1 7.7179 6.4830 3.6077 23 6 7.0817 8.3322 2.7281 24 7 6.0612 9.1173 2.4654 25 14 8.8029 8.8289 2.1988 26 1 9.3494 7.8071 1.2700 27 1 8.7491 10.1439 1.5112 28 1 9.6784 8.9302 3.3939 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.0020 4.1648 -1.4283 35 1 3.0492 4.3342 1.1841 36 1 2.7770 3.5240 3.2834 37 1 2.9557 1.3688 5.1001 38 1 1.2783 1.9641 5.0993 39 1 3.6747 1.9381 7.1958 40 1 2.5315 3.1054 8.0020 41 1 5.2553 3.8179 7.3459 42 1 3.9077 5.0339 7.3606 43 1 3.6310 5.9491 5.5400 44 1 3.3894 5.1247 3.9810 45 1 4.8637 7.3466 3.5926 46 1 6.2021 9.9564 1.9995 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699618096.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:45 Heat of formation + Delta-G solvation = -48.797313 kcal Electronic energy + Delta-G solvation = -29097.683693 eV Core-core repulsion = 24989.113949 eV Total energy + Delta-G solvation = -4108.569744 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.59336 -41.60673 -40.24949 -39.55058 -35.96719 -35.72065 -34.92428 -33.74991 -33.32037 -32.05552 -30.06569 -29.21255 -27.54685 -25.41697 -25.36289 -24.18339 -23.55449 -21.89498 -21.16209 -21.06529 -20.43318 -19.91466 -18.92291 -17.75751 -17.40130 -17.20407 -17.06070 -16.87962 -16.50191 -16.28260 -15.99150 -15.74570 -15.55638 -15.31922 -15.17791 -14.87874 -14.52373 -14.20329 -14.04180 -13.87735 -13.61738 -13.53141 -13.28244 -13.07841 -12.92775 -12.63326 -12.51222 -12.44909 -12.34379 -12.15024 -11.98342 -11.95939 -11.62362 -11.49214 -11.02277 -10.88689 -10.38343 -10.10395 -10.00567 -9.72934 -9.57938 -8.46571 -5.94689 0.30093 1.06658 1.38378 1.40982 1.50941 1.78475 2.04882 2.17755 2.28381 2.31500 2.80815 3.19054 3.33462 3.51085 3.55034 3.71655 3.79470 3.83447 4.06148 4.13696 4.14366 4.25657 4.30343 4.32417 4.39789 4.43028 4.48285 4.57726 4.65390 4.69651 4.83517 4.88027 4.95155 5.00257 5.02046 5.09159 5.20891 5.26471 5.31014 5.33324 5.40988 5.50104 5.92349 5.99459 6.10619 6.46278 6.61369 7.13885 7.15038 7.56848 8.14111 8.70299 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009280 B = 0.003571 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3016.498155 B = 7839.096694 C =10377.203679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.051 4.051 3 C 0.073 3.927 4 O -0.177 6.177 5 C -0.028 4.028 6 C -0.206 4.206 7 C -0.269 4.269 8 C 0.585 3.415 9 O -0.570 6.570 10 N -0.712 5.712 11 C 0.142 3.858 12 C 0.014 3.986 13 H 0.109 0.891 14 C -0.112 4.112 15 C -0.004 4.004 16 N -0.470 5.470 17 C 0.021 3.979 18 C 0.442 3.558 19 O -0.618 6.618 20 N -0.572 5.572 21 C -0.333 4.333 22 H 0.074 0.926 23 C -0.008 4.008 24 N -0.917 5.917 25 Si 0.987 3.013 26 H -0.274 1.274 27 H -0.269 1.269 28 H -0.274 1.274 29 H 0.086 0.914 30 H 0.043 0.957 31 H 0.063 0.937 32 H 0.102 0.898 33 H 0.098 0.902 34 H 0.243 0.757 35 H 0.158 0.842 36 H 0.402 0.598 37 H 0.059 0.941 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.113 0.887 41 H 0.064 0.936 42 H 0.083 0.917 43 H 0.087 0.913 44 H 0.099 0.901 45 H 0.396 0.604 46 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.122 -10.504 -0.889 18.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.088 4.088 3 C 0.020 3.980 4 O -0.073 6.073 5 C -0.093 4.093 6 C -0.226 4.226 7 C -0.273 4.273 8 C 0.374 3.626 9 O -0.452 6.452 10 N -0.362 5.362 11 C 0.018 3.982 12 C -0.096 4.096 13 H 0.126 0.874 14 C -0.150 4.150 15 C -0.132 4.132 16 N -0.193 5.193 17 C -0.111 4.111 18 C 0.230 3.770 19 O -0.504 6.504 20 N -0.210 5.210 21 C -0.462 4.462 22 H 0.092 0.908 23 C -0.208 4.208 24 N -0.558 5.558 25 Si 0.811 3.189 26 H -0.199 1.199 27 H -0.193 1.193 28 H -0.199 1.199 29 H 0.105 0.895 30 H 0.062 0.938 31 H 0.082 0.918 32 H 0.121 0.879 33 H 0.116 0.884 34 H 0.259 0.741 35 H 0.176 0.824 36 H 0.238 0.762 37 H 0.077 0.923 38 H 0.105 0.895 39 H 0.111 0.889 40 H 0.131 0.869 41 H 0.082 0.918 42 H 0.101 0.899 43 H 0.104 0.896 44 H 0.117 0.883 45 H 0.230 0.770 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.331 -12.023 -1.316 18.753 hybrid contribution 0.636 2.159 0.041 2.251 sum -13.695 -9.864 -1.275 16.926 Atomic orbital electron populations 1.21644 0.92297 1.03606 1.01776 1.20448 0.97777 0.85292 1.05284 1.23223 0.96684 0.95125 0.83017 1.83780 1.65173 1.23592 1.34722 1.24543 1.02167 0.85941 0.96639 1.23075 1.06154 0.97665 0.95665 1.21297 1.15226 0.96966 0.93857 1.17386 0.76595 0.84158 0.84448 1.90695 1.48940 1.21001 1.84578 1.45773 1.66848 1.17178 1.06406 1.21417 1.01539 0.96724 0.78495 1.23857 0.92020 0.97767 0.95920 0.87370 1.23101 0.97554 0.98817 0.95489 1.23831 1.00951 0.99805 0.88645 1.68828 1.19490 1.20267 1.10695 1.22437 0.93871 0.93524 1.01224 1.20717 0.91621 0.82173 0.82522 1.90509 1.45339 1.54022 1.60529 1.41899 1.09292 1.18590 1.51244 1.19558 0.86588 1.04370 1.35728 0.90771 1.25921 1.02850 0.95345 0.96664 1.69643 1.31896 1.12709 1.41564 0.85083 0.77663 0.77723 0.78464 1.19899 1.19338 1.19938 0.89512 0.93761 0.91833 0.87948 0.88413 0.74080 0.82422 0.76244 0.92295 0.89534 0.88869 0.86886 0.91756 0.89919 0.89551 0.88256 0.76977 0.91290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 9.89 71.98 0.71 -1.71 16 2 C -0.05 -1.07 5.94 29.85 0.18 -0.90 16 3 C 0.07 1.89 6.63 25.26 0.17 2.06 16 4 O -0.18 -4.28 10.52 4.41 0.05 -4.24 16 5 C -0.03 -0.62 12.03 66.89 0.80 0.19 16 6 C -0.21 -5.44 10.60 23.65 0.25 -5.19 16 7 C -0.27 -7.82 6.31 -18.99 -0.12 -7.94 16 8 C 0.59 18.12 7.81 86.65 0.68 18.80 16 9 O -0.57 -19.36 14.85 -4.08 -0.06 -19.42 16 10 N -0.71 -19.64 5.46 -466.41 -2.55 -22.19 16 11 C 0.14 3.36 5.82 86.38 0.50 3.86 16 12 C 0.01 0.29 3.25 42.19 0.14 0.43 16 13 H 0.11 1.77 7.91 -2.39 -0.02 1.75 16 14 C -0.11 -2.02 8.00 30.94 0.25 -1.78 16 15 C 0.00 -0.09 7.69 83.58 0.64 0.55 16 16 N -0.47 -14.23 5.39 -906.70 -4.89 -19.11 16 17 C 0.02 0.68 5.04 85.56 0.43 1.12 16 18 C 0.44 20.61 7.83 87.66 0.69 21.30 16 19 O -0.62 -34.65 16.01 -3.07 -0.05 -34.70 16 20 N -0.57 -28.47 5.29 -306.97 -1.62 -30.10 16 21 C -0.33 -18.63 9.68 84.04 0.81 -17.82 16 22 H 0.07 4.49 7.16 -2.91 -0.02 4.47 16 23 C -0.01 -0.40 5.50 84.93 0.47 0.06 16 24 N -0.92 -48.04 13.05 21.66 0.28 -47.75 16 25 Si 0.99 42.41 29.55 68.60 2.03 44.43 16 26 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 27 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 28 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 29 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.04 0.95 8.14 -2.38 -0.02 0.93 16 31 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.10 2.39 6.49 -2.39 -0.02 2.37 16 34 H 0.24 3.43 8.06 -2.91 -0.02 3.41 16 35 H 0.16 4.02 7.74 -2.91 -0.02 3.99 16 36 H 0.40 10.93 5.37 -92.71 -0.50 10.43 16 37 H 0.06 1.59 7.87 -2.38 -0.02 1.57 16 38 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.09 1.78 7.94 -2.39 -0.02 1.76 16 40 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.08 1.87 7.44 -2.39 -0.02 1.85 16 43 H 0.09 2.35 7.35 -2.38 -0.02 2.33 16 44 H 0.10 2.76 6.25 -2.38 -0.01 2.74 16 45 H 0.40 18.46 7.90 -92.71 -0.73 17.73 16 46 H 0.28 13.67 8.31 -92.71 -0.77 12.90 16 Total: -1.00 -74.72 386.23 -0.42 -75.14 By element: Atomic # 1 Polarization: 45.10 SS G_CDS: -0.20 Total: 44.90 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: 6.60 Total: 13.03 kcal Atomic # 7 Polarization: -110.38 SS G_CDS: -8.77 Total: -119.15 kcal Atomic # 8 Polarization: -58.29 SS G_CDS: -0.06 Total: -58.35 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.43 kcal Total: -74.72 -0.42 -75.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699618096.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.343 kcal (2) G-P(sol) polarization free energy of solvation -74.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds