Wall clock time and date at job start Tue Mar 31 2020 20:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50695 * 109.47190 * 2 1 4 4 O 1.33655 * 125.80632 * 270.00758 * 3 2 1 5 5 C 1.34214 * 110.90981 * 179.97438 * 4 3 2 6 6 C 1.34172 * 109.12318 * 359.71034 * 5 4 3 7 7 C 1.36422 * 125.80006 * 90.00361 * 3 2 1 8 8 C 1.47382 * 127.18944 * 0.02562 * 7 3 2 9 9 O 1.21613 * 119.99902 * 359.97438 * 8 7 3 10 10 N 1.34775 * 119.99822 * 179.97438 * 8 7 3 11 11 C 1.46498 * 120.00077 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47339 * 180.02562 * 11 10 8 13 13 H 1.09004 * 112.79057 * 284.19595 * 12 11 10 14 14 C 1.53514 * 113.48011 * 153.37887 * 12 11 10 15 15 C 1.53511 * 83.57584 * 219.21262 * 14 12 11 16 16 N 1.47473 * 87.93163 * 26.02441 * 15 14 12 17 17 C 1.46908 * 110.99862 * 221.29218 * 16 15 14 18 18 C 1.50704 * 109.47232 * 294.02181 * 17 16 15 19 19 O 1.21293 * 119.99954 * 354.32956 * 18 17 16 20 20 N 1.34769 * 119.99939 * 174.33241 * 18 17 16 21 21 C 1.37092 * 120.00183 * 179.97438 * 20 18 17 22 22 H 1.08003 * 120.00052 * 359.97438 * 21 20 18 23 23 C 1.38957 * 120.00324 * 180.02562 * 21 20 18 24 24 N 1.31407 * 119.99922 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 119.99882 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47484 * 359.97438 * 25 23 21 27 27 H 1.48504 * 109.47078 * 120.00144 * 25 23 21 28 28 H 1.48508 * 109.47169 * 239.99615 * 25 23 21 29 29 H 1.09000 * 109.46939 * 299.98910 * 1 2 3 30 30 H 1.08993 * 109.47282 * 59.99647 * 1 2 3 31 31 H 1.08998 * 109.47122 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46850 * 240.00391 * 2 1 3 33 33 H 1.08997 * 109.47594 * 120.00756 * 2 1 3 34 34 H 1.07998 * 125.43498 * 179.97438 * 5 4 3 35 35 H 1.08007 * 127.02356 * 180.26869 * 6 5 4 36 36 H 0.97000 * 119.99937 * 0.02562 * 10 8 7 37 37 H 1.09003 * 109.47013 * 60.00181 * 11 10 8 38 38 H 1.09002 * 109.46993 * 300.00343 * 11 10 8 39 39 H 1.08998 * 114.16355 * 105.56035 * 14 12 11 40 40 H 1.09005 * 114.34227 * 332.87423 * 14 12 11 41 41 H 1.08996 * 113.47410 * 271.25482 * 15 14 12 42 42 H 1.09000 * 113.52788 * 140.80278 * 15 14 12 43 43 H 1.08997 * 109.46736 * 54.01762 * 17 16 15 44 44 H 1.08994 * 109.47042 * 174.01475 * 17 16 15 45 45 H 0.97010 * 120.00175 * 359.97438 * 20 18 17 46 46 H 0.96998 * 120.00088 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2928 2.1580 -1.0839 5 6 2.7247 3.3810 -0.7389 6 6 2.7514 3.4765 0.5991 7 6 2.2984 2.1731 1.1065 8 6 2.1552 1.7664 2.5158 9 8 1.7603 0.6491 2.7891 10 7 2.4621 2.6327 3.5016 11 6 2.3193 2.2287 4.9025 12 6 2.7293 3.3885 5.8122 13 1 3.8098 3.5220 5.8651 14 6 2.0490 3.3568 7.1880 15 6 1.9708 4.8775 6.9927 16 7 1.9957 4.6381 5.5377 17 6 2.8566 5.6155 4.8581 18 6 2.2537 6.9907 4.9864 19 8 1.1609 7.1289 5.4942 20 7 2.9288 8.0670 4.5368 21 6 2.3801 9.3180 4.6530 22 1 1.4067 9.4410 5.1044 23 6 3.0759 10.4277 4.1890 24 7 4.2601 10.2781 3.6392 25 14 2.3280 12.1321 4.3467 26 1 0.9963 12.0303 4.9960 27 1 3.2174 12.9886 5.1718 28 1 2.1755 12.7326 2.9970 29 1 -0.3633 0.5137 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.0020 4.1648 -1.4283 35 1 3.0483 4.3345 1.1842 36 1 2.7767 3.5239 3.2836 37 1 2.9588 1.3683 5.0996 38 1 1.2809 1.9622 5.0998 39 1 2.7029 3.0444 8.0021 40 1 1.0799 2.8578 7.1986 41 1 2.8488 5.4082 7.3606 42 1 1.0362 5.3139 7.3450 43 1 3.8458 5.6084 5.3157 44 1 2.9421 5.3531 3.8037 45 1 3.8029 7.9566 4.1310 46 1 4.7456 11.0527 3.3150 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699618097.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:50 Heat of formation + Delta-G solvation = -25.105691 kcal Electronic energy + Delta-G solvation = -28877.454169 eV Core-core repulsion = 24769.911770 eV Total energy + Delta-G solvation = -4107.542399 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.69887 -40.49358 -39.11380 -37.77845 -34.74028 -34.05496 -33.95550 -32.83523 -31.44574 -30.69293 -29.14560 -28.21996 -25.86637 -24.45620 -23.79606 -23.29299 -22.56796 -20.94180 -20.09719 -19.50941 -19.30158 -18.01670 -17.97238 -16.42163 -16.26136 -16.21374 -15.96202 -15.63262 -15.01850 -14.93470 -14.68067 -14.51706 -14.44325 -14.01088 -13.82352 -13.67777 -13.48874 -13.05252 -12.86726 -12.71970 -12.44168 -12.33320 -11.95983 -11.74611 -11.72348 -11.54585 -11.39322 -11.17873 -11.13933 -10.83011 -10.53231 -10.39194 -10.28446 -9.93865 -9.91845 -9.57669 -9.05906 -8.77314 -8.68146 -8.34793 -8.03520 -6.48571 -3.89364 1.26564 1.95567 2.65504 3.11332 3.19537 3.22879 3.29936 3.35879 3.80652 3.95946 4.17327 4.33258 4.44703 4.69914 4.72682 4.75855 4.91003 4.92480 5.00908 5.07218 5.16851 5.23706 5.33896 5.39277 5.39886 5.46777 5.54186 5.60036 5.67567 5.72274 5.79922 5.83191 5.86743 5.92519 6.05120 6.06642 6.15595 6.19206 6.24580 6.42978 6.56987 6.89593 7.15662 7.49181 7.53214 7.98673 8.23293 8.53552 9.11272 9.46043 9.97410 10.69092 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010886 B = 0.003013 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2571.451196 B = 9291.231758 C =11286.042290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.050 4.050 3 C 0.077 3.923 4 O -0.176 6.176 5 C -0.038 4.038 6 C -0.186 4.186 7 C -0.243 4.243 8 C 0.590 3.410 9 O -0.548 6.548 10 N -0.713 5.713 11 C 0.143 3.857 12 C 0.003 3.997 13 H 0.083 0.917 14 C -0.136 4.136 15 C 0.016 3.984 16 N -0.437 5.437 17 C 0.008 3.992 18 C 0.442 3.558 19 O -0.576 6.576 20 N -0.563 5.563 21 C -0.299 4.299 22 H 0.104 0.896 23 C 0.023 3.977 24 N -0.901 5.901 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.281 1.281 28 H -0.281 1.281 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.113 0.887 34 H 0.209 0.791 35 H 0.158 0.842 36 H 0.401 0.599 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.095 0.905 41 H 0.066 0.934 42 H 0.094 0.906 43 H 0.056 0.944 44 H 0.083 0.917 45 H 0.391 0.609 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.232 -18.043 -4.634 18.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.087 4.087 3 C 0.024 3.976 4 O -0.072 6.072 5 C -0.103 4.103 6 C -0.206 4.206 7 C -0.247 4.247 8 C 0.379 3.621 9 O -0.428 6.428 10 N -0.364 5.364 11 C 0.019 3.981 12 C -0.107 4.107 13 H 0.100 0.900 14 C -0.175 4.175 15 C -0.113 4.113 16 N -0.160 5.160 17 C -0.124 4.124 18 C 0.227 3.773 19 O -0.459 6.459 20 N -0.200 5.200 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.542 5.542 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.207 1.207 28 H -0.207 1.207 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.131 0.869 34 H 0.226 0.774 35 H 0.175 0.825 36 H 0.237 0.763 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.114 0.886 41 H 0.084 0.916 42 H 0.112 0.888 43 H 0.074 0.926 44 H 0.101 0.899 45 H 0.224 0.776 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.307 -18.642 -4.861 19.268 hybrid contribution 1.482 1.938 0.068 2.441 sum 1.175 -16.704 -4.793 17.417 Atomic orbital electron populations 1.21690 0.93342 1.02546 1.02546 1.20371 0.97005 0.86434 1.04908 1.22831 0.97211 0.94433 0.83160 1.83762 1.65253 1.23237 1.34967 1.23896 1.03984 0.85937 0.96503 1.22939 1.05247 0.97646 0.94722 1.21160 1.13848 0.95812 0.93882 1.17170 0.76862 0.84345 0.83759 1.90728 1.47422 1.20490 1.84144 1.45736 1.67687 1.17052 1.05973 1.21324 1.02128 0.95651 0.78990 1.23848 0.98074 0.93014 0.95780 0.89954 1.23206 1.01443 0.97647 0.95161 1.23540 1.03341 0.95129 0.89294 1.68904 1.35630 1.01125 1.10326 1.22550 0.95451 0.94041 1.00405 1.19608 0.87391 0.85041 0.85292 1.90542 1.21249 1.85751 1.48404 1.41874 1.19116 1.05705 1.53265 1.19745 1.03805 0.81999 1.37274 0.87867 1.25259 0.95704 1.00179 0.96726 1.69610 1.12576 1.31712 1.40342 0.85809 0.79200 0.81420 0.77990 1.19191 1.20726 1.20696 0.91739 0.92646 0.91417 0.90177 0.86878 0.77407 0.82478 0.76309 0.91201 0.90688 0.90521 0.88634 0.91588 0.88780 0.92587 0.89858 0.77551 0.91879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.89 37.16 0.37 -0.99 16 2 C -0.05 -0.50 5.94 -27.89 -0.17 -0.67 16 3 C 0.08 0.93 6.63 -34.97 -0.23 0.70 16 4 O -0.18 -2.03 10.52 7.65 0.08 -1.95 16 5 C -0.04 -0.38 12.03 29.30 0.35 -0.03 16 6 C -0.19 -2.17 10.60 -37.46 -0.40 -2.57 16 7 C -0.24 -3.21 6.31 -103.27 -0.65 -3.86 16 8 C 0.59 8.46 7.81 -12.54 -0.10 8.37 16 9 O -0.55 -8.76 14.84 5.27 0.08 -8.68 16 10 N -0.71 -9.30 5.46 -61.40 -0.34 -9.63 16 11 C 0.14 1.72 5.81 -4.04 -0.02 1.70 16 12 C 0.00 0.04 3.25 -71.43 -0.23 -0.20 16 13 H 0.08 0.88 7.64 -51.93 -0.40 0.48 16 14 C -0.14 -1.49 8.00 -26.20 -0.21 -1.70 16 15 C 0.02 0.23 6.35 -7.55 -0.05 0.18 16 16 N -0.44 -6.83 5.74 -237.95 -1.37 -8.20 16 17 C 0.01 0.13 5.10 -4.97 -0.03 0.10 16 18 C 0.44 10.03 7.47 -10.99 -0.08 9.95 16 19 O -0.58 -15.21 14.98 5.55 0.08 -15.13 16 20 N -0.56 -13.75 5.29 -10.96 -0.06 -13.81 16 21 C -0.30 -8.13 9.68 -14.93 -0.14 -8.27 16 22 H 0.10 2.98 7.16 -52.48 -0.38 2.60 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 24 N -0.90 -23.85 13.05 55.50 0.72 -23.13 16 25 Si 0.93 20.66 29.55 -169.99 -5.02 15.64 16 26 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 27 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 28 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.11 1.25 6.48 -51.93 -0.34 0.91 16 34 H 0.21 1.37 8.06 -52.49 -0.42 0.94 16 35 H 0.16 1.65 7.74 -52.48 -0.41 1.24 16 36 H 0.40 5.03 5.49 -40.82 -0.22 4.81 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.07 0.98 7.88 -51.93 -0.41 0.57 16 39 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.10 1.02 7.94 -51.93 -0.41 0.61 16 41 H 0.07 0.97 7.83 -51.93 -0.41 0.57 16 42 H 0.09 1.59 7.97 -51.93 -0.41 1.18 16 43 H 0.06 0.83 7.56 -51.93 -0.39 0.43 16 44 H 0.08 1.24 6.55 -51.93 -0.34 0.90 16 45 H 0.39 9.09 7.90 -40.82 -0.32 8.77 16 46 H 0.27 6.79 8.31 -40.82 -0.34 6.46 16 LS Contribution 384.49 15.07 5.79 5.79 Total: -1.00 -32.98 384.49 -8.24 -41.22 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: -6.53 Total: 14.65 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: -1.69 Total: 3.22 kcal Atomic # 7 Polarization: -53.73 SS G_CDS: -1.03 Total: -54.76 kcal Atomic # 8 Polarization: -26.00 SS G_CDS: 0.24 Total: -25.75 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.98 -8.24 -41.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699618097.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.113 kcal (2) G-P(sol) polarization free energy of solvation -32.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds