Wall clock time and date at job start Tue Mar 31 2020 20:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50695 * 109.47190 * 2 1 4 4 O 1.33655 * 125.80632 * 270.00758 * 3 2 1 5 5 C 1.34214 * 110.90981 * 179.97438 * 4 3 2 6 6 C 1.34172 * 109.12318 * 359.71034 * 5 4 3 7 7 C 1.36422 * 125.80006 * 90.00361 * 3 2 1 8 8 C 1.47382 * 127.18944 * 0.02562 * 7 3 2 9 9 O 1.21613 * 119.99902 * 359.97438 * 8 7 3 10 10 N 1.34775 * 119.99822 * 179.97438 * 8 7 3 11 11 C 1.46498 * 120.00077 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47339 * 180.02562 * 11 10 8 13 13 H 1.09004 * 112.79057 * 284.19595 * 12 11 10 14 14 C 1.53514 * 113.48011 * 153.37887 * 12 11 10 15 15 C 1.53511 * 83.57584 * 219.21262 * 14 12 11 16 16 N 1.47473 * 87.93163 * 26.02441 * 15 14 12 17 17 C 1.46908 * 110.99862 * 221.29218 * 16 15 14 18 18 C 1.50704 * 109.47232 * 294.02181 * 17 16 15 19 19 O 1.21293 * 119.99954 * 354.32956 * 18 17 16 20 20 N 1.34769 * 119.99939 * 174.33241 * 18 17 16 21 21 C 1.37092 * 120.00183 * 179.97438 * 20 18 17 22 22 H 1.08003 * 120.00052 * 359.97438 * 21 20 18 23 23 C 1.38957 * 120.00324 * 180.02562 * 21 20 18 24 24 N 1.31407 * 119.99922 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 119.99882 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47484 * 359.97438 * 25 23 21 27 27 H 1.48504 * 109.47078 * 120.00144 * 25 23 21 28 28 H 1.48508 * 109.47169 * 239.99615 * 25 23 21 29 29 H 1.09000 * 109.46939 * 299.98910 * 1 2 3 30 30 H 1.08993 * 109.47282 * 59.99647 * 1 2 3 31 31 H 1.08998 * 109.47122 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46850 * 240.00391 * 2 1 3 33 33 H 1.08997 * 109.47594 * 120.00756 * 2 1 3 34 34 H 1.07998 * 125.43498 * 179.97438 * 5 4 3 35 35 H 1.08007 * 127.02356 * 180.26869 * 6 5 4 36 36 H 0.97000 * 119.99937 * 0.02562 * 10 8 7 37 37 H 1.09003 * 109.47013 * 60.00181 * 11 10 8 38 38 H 1.09002 * 109.46993 * 300.00343 * 11 10 8 39 39 H 1.08998 * 114.16355 * 105.56035 * 14 12 11 40 40 H 1.09005 * 114.34227 * 332.87423 * 14 12 11 41 41 H 1.08996 * 113.47410 * 271.25482 * 15 14 12 42 42 H 1.09000 * 113.52788 * 140.80278 * 15 14 12 43 43 H 1.08997 * 109.46736 * 54.01762 * 17 16 15 44 44 H 1.08994 * 109.47042 * 174.01475 * 17 16 15 45 45 H 0.97010 * 120.00175 * 359.97438 * 20 18 17 46 46 H 0.96998 * 120.00088 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2928 2.1580 -1.0839 5 6 2.7247 3.3810 -0.7389 6 6 2.7514 3.4765 0.5991 7 6 2.2984 2.1731 1.1065 8 6 2.1552 1.7664 2.5158 9 8 1.7603 0.6491 2.7891 10 7 2.4621 2.6327 3.5016 11 6 2.3193 2.2287 4.9025 12 6 2.7293 3.3885 5.8122 13 1 3.8098 3.5220 5.8651 14 6 2.0490 3.3568 7.1880 15 6 1.9708 4.8775 6.9927 16 7 1.9957 4.6381 5.5377 17 6 2.8566 5.6155 4.8581 18 6 2.2537 6.9907 4.9864 19 8 1.1609 7.1289 5.4942 20 7 2.9288 8.0670 4.5368 21 6 2.3801 9.3180 4.6530 22 1 1.4067 9.4410 5.1044 23 6 3.0759 10.4277 4.1890 24 7 4.2601 10.2781 3.6392 25 14 2.3280 12.1321 4.3467 26 1 0.9963 12.0303 4.9960 27 1 3.2174 12.9886 5.1718 28 1 2.1755 12.7326 2.9970 29 1 -0.3633 0.5137 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.0020 4.1648 -1.4283 35 1 3.0483 4.3345 1.1842 36 1 2.7767 3.5239 3.2836 37 1 2.9588 1.3683 5.0996 38 1 1.2809 1.9622 5.0998 39 1 2.7029 3.0444 8.0021 40 1 1.0799 2.8578 7.1986 41 1 2.8488 5.4082 7.3606 42 1 1.0362 5.3139 7.3450 43 1 3.8458 5.6084 5.3157 44 1 2.9421 5.3531 3.8037 45 1 3.8029 7.9566 4.1310 46 1 4.7456 11.0527 3.3150 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699618097.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:49 Heat of formation + Delta-G solvation = -50.188978 kcal Electronic energy + Delta-G solvation = -28878.541862 eV Core-core repulsion = 24769.911770 eV Total energy + Delta-G solvation = -4108.630091 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.57154 -41.66258 -40.26867 -39.50658 -36.00840 -35.69071 -34.91329 -33.72706 -33.34941 -32.05919 -30.05267 -29.20091 -27.56409 -25.41258 -25.36059 -24.17534 -23.53631 -21.87632 -21.12756 -21.10023 -20.44153 -19.92569 -18.91107 -17.82397 -17.33058 -17.28644 -17.01915 -16.87356 -16.53066 -16.18394 -15.99423 -15.70299 -15.55920 -15.33559 -15.19477 -14.90537 -14.54151 -14.19339 -13.93859 -13.80134 -13.59668 -13.56340 -13.27182 -13.14006 -12.92336 -12.79913 -12.50826 -12.44743 -12.36271 -12.14036 -11.97455 -11.92370 -11.66804 -11.49993 -11.00711 -10.86086 -10.33774 -10.09002 -10.03030 -9.79784 -9.55811 -8.48660 -5.96800 0.31971 1.09693 1.34597 1.40942 1.54221 1.80899 2.01538 2.21039 2.27502 2.32922 2.82855 3.17631 3.23483 3.53720 3.55567 3.74980 3.78405 3.85802 4.06923 4.15316 4.16333 4.25357 4.30247 4.34094 4.42099 4.44091 4.48984 4.59155 4.66312 4.71214 4.86599 4.89441 4.94609 5.00328 5.02809 5.09736 5.18875 5.27228 5.32027 5.35113 5.40187 5.49294 5.90405 6.02081 6.08024 6.49742 6.58276 7.11461 7.17641 7.53716 8.09774 8.68707 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010886 B = 0.003013 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2571.451196 B = 9291.231758 C =11286.042290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.050 4.050 3 C 0.072 3.928 4 O -0.179 6.179 5 C -0.028 4.028 6 C -0.206 4.206 7 C -0.268 4.268 8 C 0.585 3.415 9 O -0.571 6.571 10 N -0.711 5.711 11 C 0.144 3.856 12 C 0.015 3.985 13 H 0.105 0.895 14 C -0.114 4.114 15 C 0.006 3.994 16 N -0.464 5.464 17 C 0.020 3.980 18 C 0.440 3.560 19 O -0.618 6.618 20 N -0.571 5.571 21 C -0.331 4.331 22 H 0.076 0.924 23 C -0.009 4.009 24 N -0.917 5.917 25 Si 0.989 3.011 26 H -0.276 1.276 27 H -0.270 1.270 28 H -0.271 1.271 29 H 0.038 0.962 30 H 0.060 0.940 31 H 0.086 0.914 32 H 0.105 0.895 33 H 0.101 0.899 34 H 0.245 0.755 35 H 0.165 0.835 36 H 0.403 0.597 37 H 0.086 0.914 38 H 0.061 0.939 39 H 0.108 0.892 40 H 0.097 0.903 41 H 0.066 0.934 42 H 0.061 0.939 43 H 0.082 0.918 44 H 0.103 0.897 45 H 0.397 0.603 46 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.486 -18.666 -5.380 19.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.087 4.087 3 C 0.018 3.982 4 O -0.074 6.074 5 C -0.093 4.093 6 C -0.225 4.225 7 C -0.273 4.273 8 C 0.374 3.626 9 O -0.453 6.453 10 N -0.361 5.361 11 C 0.021 3.979 12 C -0.094 4.094 13 H 0.123 0.877 14 C -0.152 4.152 15 C -0.123 4.123 16 N -0.188 5.188 17 C -0.111 4.111 18 C 0.227 3.773 19 O -0.504 6.504 20 N -0.209 5.209 21 C -0.461 4.461 22 H 0.094 0.906 23 C -0.209 4.209 24 N -0.558 5.558 25 Si 0.813 3.187 26 H -0.200 1.200 27 H -0.196 1.196 28 H -0.196 1.196 29 H 0.057 0.943 30 H 0.079 0.921 31 H 0.105 0.895 32 H 0.123 0.877 33 H 0.119 0.881 34 H 0.261 0.739 35 H 0.182 0.818 36 H 0.239 0.761 37 H 0.104 0.896 38 H 0.080 0.920 39 H 0.127 0.873 40 H 0.115 0.885 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.100 0.900 44 H 0.121 0.879 45 H 0.231 0.769 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.978 -19.270 -5.610 20.093 hybrid contribution 1.065 2.108 0.295 2.380 sum 2.043 -17.161 -5.315 18.081 Atomic orbital electron populations 1.21660 0.92998 1.03519 1.01503 1.20427 0.97197 0.85544 1.05487 1.23194 0.96720 0.95163 0.83099 1.83783 1.65173 1.23727 1.34749 1.24593 1.02148 0.85870 0.96724 1.23118 1.06329 0.97455 0.95580 1.21292 1.15276 0.97049 0.93668 1.17405 0.76545 0.84183 0.84475 1.90705 1.48623 1.21414 1.84596 1.45749 1.67210 1.16934 1.06225 1.21370 1.01747 0.96275 0.78541 1.23875 0.99009 0.90708 0.95827 0.87684 1.23149 1.02188 0.94194 0.95707 1.23543 1.01738 0.97908 0.89109 1.68906 1.36842 1.02338 1.10683 1.22450 0.96108 0.90358 1.02212 1.20661 0.86649 0.86837 0.83131 1.90516 1.23253 1.86862 1.49745 1.41917 1.19454 1.05534 1.53949 1.19639 1.03522 0.83939 1.39003 0.90620 1.25964 0.96020 1.03060 0.95905 1.69657 1.13064 1.32910 1.40195 0.84931 0.78107 0.77332 0.78348 1.20042 1.19562 1.19580 0.94278 0.92054 0.89484 0.87713 0.88082 0.73924 0.81788 0.76061 0.89637 0.92037 0.87320 0.88477 0.91575 0.92016 0.89987 0.87866 0.76942 0.91272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 9.89 71.98 0.71 -1.84 16 2 C -0.05 -0.96 5.94 29.85 0.18 -0.78 16 3 C 0.07 1.69 6.63 25.26 0.17 1.85 16 4 O -0.18 -3.84 10.52 4.46 0.05 -3.79 16 5 C -0.03 -0.52 12.03 66.89 0.80 0.28 16 6 C -0.21 -4.58 10.60 23.65 0.25 -4.33 16 7 C -0.27 -7.00 6.31 -18.99 -0.12 -7.12 16 8 C 0.58 16.67 7.81 86.65 0.68 17.35 16 9 O -0.57 -18.36 14.84 -4.07 -0.06 -18.42 16 10 N -0.71 -17.86 5.46 -466.41 -2.55 -20.41 16 11 C 0.14 3.25 5.81 86.38 0.50 3.75 16 12 C 0.02 0.32 3.25 42.19 0.14 0.46 16 13 H 0.11 1.83 7.64 -2.38 -0.02 1.81 16 14 C -0.11 -2.26 8.00 30.94 0.25 -2.01 16 15 C 0.01 0.17 6.35 83.58 0.53 0.71 16 16 N -0.46 -14.11 5.74 -906.74 -5.20 -19.32 16 17 C 0.02 0.66 5.10 85.56 0.44 1.09 16 18 C 0.44 20.25 7.47 87.66 0.66 20.91 16 19 O -0.62 -33.76 14.98 -3.07 -0.05 -33.81 16 20 N -0.57 -28.29 5.29 -306.99 -1.62 -29.92 16 21 C -0.33 -18.45 9.68 84.04 0.81 -17.63 16 22 H 0.08 4.56 7.16 -2.91 -0.02 4.54 16 23 C -0.01 -0.49 5.50 84.93 0.47 -0.03 16 24 N -0.92 -48.02 13.05 21.66 0.28 -47.74 16 25 Si 0.99 42.23 29.55 68.60 2.03 44.26 16 26 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 27 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 28 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 29 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.10 1.46 8.14 -2.38 -0.02 1.44 16 33 H 0.10 2.21 6.48 -2.39 -0.02 2.20 16 34 H 0.24 2.46 8.06 -2.91 -0.02 2.44 16 35 H 0.16 3.28 7.74 -2.91 -0.02 3.26 16 36 H 0.40 9.64 5.49 -92.71 -0.51 9.13 16 37 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.06 1.57 7.88 -2.39 -0.02 1.55 16 39 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.10 1.92 7.94 -2.38 -0.02 1.90 16 41 H 0.07 1.90 7.83 -2.39 -0.02 1.88 16 42 H 0.06 2.18 7.97 -2.39 -0.02 2.16 16 43 H 0.08 2.23 7.56 -2.39 -0.02 2.21 16 44 H 0.10 2.90 6.55 -2.39 -0.02 2.89 16 45 H 0.40 18.46 7.90 -92.70 -0.73 17.72 16 46 H 0.28 13.59 8.31 -92.71 -0.77 12.82 16 Total: -1.00 -73.40 384.49 -0.88 -74.28 By element: Atomic # 1 Polarization: 42.41 SS G_CDS: -0.22 Total: 42.19 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: 6.46 Total: 12.67 kcal Atomic # 7 Polarization: -108.29 SS G_CDS: -9.09 Total: -117.38 kcal Atomic # 8 Polarization: -55.96 SS G_CDS: -0.06 Total: -56.02 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Total: -73.40 -0.88 -74.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699618097.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.089 kcal (2) G-P(sol) polarization free energy of solvation -73.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds