Wall clock time and date at job start Tue Mar 31 2020 19:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34184 * 125.43077 * 2 1 4 4 C 1.47024 * 105.95004 * 180.14582 * 3 2 1 5 5 C 1.47383 * 127.19051 * 179.83515 * 4 3 2 6 6 O 1.21612 * 119.99964 * 179.68630 * 5 4 3 7 7 N 1.34777 * 119.99856 * 359.67477 * 5 4 3 8 8 C 1.46501 * 119.99684 * 180.02562 * 7 5 4 9 9 H 1.08996 * 112.90771 * 23.74984 * 8 7 5 10 10 C 1.53783 * 113.61181 * 155.00346 * 8 7 5 11 11 C 1.53784 * 87.07820 * 139.98196 * 10 8 7 12 12 H 1.09000 * 113.61513 * 89.20317 * 11 10 8 13 13 N 1.46901 * 113.61130 * 220.01710 * 11 10 8 14 14 C 1.46905 * 110.99870 * 205.00056 * 13 11 10 15 15 C 1.50697 * 109.47066 * 180.02562 * 14 13 11 16 16 O 1.21297 * 120.00124 * 0.02562 * 15 14 13 17 17 N 1.34773 * 120.00196 * 180.02562 * 15 14 13 18 18 C 1.37100 * 120.00290 * 180.02562 * 17 15 14 19 19 H 1.07990 * 119.99768 * 359.97438 * 18 17 15 20 20 C 1.38956 * 119.99812 * 180.02562 * 18 17 15 21 21 N 1.31408 * 119.99864 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99403 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47078 * 60.00286 * 22 20 18 24 24 H 1.48505 * 109.46585 * 180.02562 * 22 20 18 25 25 H 1.48495 * 109.47705 * 299.99905 * 22 20 18 26 26 C 1.53774 * 87.08351 * 334.56644 * 11 10 8 27 27 C 1.36416 * 105.61666 * 359.56721 * 4 3 2 28 28 C 1.50700 * 125.80011 * 180.26231 * 27 4 3 29 29 O 1.33648 * 108.39529 * 0.26532 * 27 4 3 30 30 H 1.09006 * 109.46179 * 180.31469 * 1 2 3 31 31 H 1.08999 * 109.47419 * 300.31105 * 1 2 3 32 32 H 1.08992 * 109.47354 * 60.31838 * 1 2 3 33 33 H 1.08000 * 127.02775 * 359.97438 * 3 2 1 34 34 H 0.96997 * 120.00324 * 0.02562 * 7 5 4 35 35 H 1.08992 * 113.61655 * 25.43531 * 10 8 7 36 36 H 1.08995 * 113.61334 * 254.52612 * 10 8 7 37 37 H 1.00901 * 111.00067 * 328.95231 * 13 11 10 38 38 H 1.09001 * 109.46798 * 300.00327 * 14 13 11 39 39 H 1.08998 * 109.46961 * 60.00043 * 14 13 11 40 40 H 0.97009 * 119.99629 * 359.97438 * 17 15 14 41 41 H 0.97004 * 119.99642 * 179.97438 * 21 20 18 42 42 H 1.09002 * 113.61535 * 139.97851 * 26 11 10 43 43 H 1.09003 * 113.61739 * 270.88498 * 26 11 10 44 44 H 1.09001 * 109.47127 * 90.00225 * 28 27 4 45 45 H 1.09003 * 109.47031 * 210.00080 * 28 27 4 46 46 H 1.09000 * 109.47538 * 330.00320 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2849 1.0934 0.0000 4 6 3.6710 0.6030 -0.0036 5 6 4.9024 1.4128 -0.0083 6 8 5.9891 0.8670 -0.0052 7 7 4.8241 2.7583 -0.0164 8 6 6.0482 3.5632 -0.0217 9 1 6.9074 3.0260 -0.4231 10 6 5.8609 4.9651 -0.6255 11 6 6.7767 5.4843 0.4956 12 1 7.8350 5.4737 0.2350 13 7 6.3419 6.7673 1.0637 14 6 7.4749 7.4927 1.6539 15 6 6.9912 8.8003 2.2257 16 8 5.8179 9.0986 2.1495 17 7 7.8621 9.6385 2.8217 18 6 7.4220 10.8280 3.3424 19 1 6.3774 11.0935 3.2745 20 6 8.3202 11.6924 3.9564 21 7 9.5913 11.3694 4.0384 22 14 7.7205 13.3133 4.6651 23 1 6.7030 13.0487 5.7139 24 1 8.8662 14.0473 5.2600 25 1 7.1158 14.1327 3.5844 26 6 6.3306 4.2638 1.3179 27 6 3.5791 -0.7580 0.0045 28 6 4.7392 -1.7198 0.0102 29 8 2.2854 -1.0933 0.0065 30 1 -0.3632 -1.0278 0.0056 31 1 -0.3634 0.5186 0.8872 32 1 -0.3633 0.5088 -0.8927 33 1 1.9594 2.1231 -0.0004 34 1 3.9573 3.1937 -0.0187 35 1 4.8380 5.3355 -0.5603 36 1 6.2881 5.0716 -1.6225 37 1 5.8744 7.3304 0.3692 38 1 7.9176 6.8910 2.4477 39 1 8.2226 7.6864 0.8848 40 1 8.8004 9.3998 2.8829 41 1 10.2184 11.9730 4.4667 42 1 7.1368 3.8041 1.8895 43 1 5.4359 4.4424 1.9144 44 1 5.0189 -1.9457 1.0392 45 1 4.4508 -2.6399 -0.4982 46 1 5.5870 -1.2697 -0.5063 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713186416.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:21 Heat of formation + Delta-G solvation = -43.609552 kcal Electronic energy + Delta-G solvation = -27293.110599 eV Core-core repulsion = 23184.765813 eV Total energy + Delta-G solvation = -4108.344786 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.95191 -40.14281 -38.64838 -37.91598 -34.64536 -33.91406 -33.52187 -33.23209 -32.34458 -31.18393 -29.81934 -26.97180 -25.84286 -25.68087 -24.49827 -23.67807 -22.39594 -21.01335 -20.38107 -19.50342 -19.04683 -17.87220 -17.53789 -16.84753 -16.68152 -16.06788 -15.81850 -15.32684 -15.26254 -14.79707 -14.75208 -14.41060 -14.07124 -13.89995 -13.74514 -13.66211 -13.40792 -13.26394 -13.23067 -13.01530 -12.77193 -12.56435 -12.48965 -12.05352 -11.95378 -11.73181 -11.55049 -11.23180 -10.99966 -10.96736 -10.60828 -10.43939 -10.20840 -10.11731 -10.09286 -9.49602 -9.17451 -8.72483 -8.44063 -8.07186 -7.95395 -6.41050 -3.81983 1.04927 1.64286 2.33940 3.02374 3.12408 3.20432 3.26085 3.30499 3.91718 4.06223 4.12998 4.37654 4.39843 4.43741 4.48827 4.56458 4.79627 4.85807 4.87003 4.93793 4.99566 5.08280 5.18151 5.21146 5.23921 5.26854 5.36091 5.45654 5.56419 5.59167 5.70136 5.80555 5.82196 5.88456 5.96397 5.98732 6.05636 6.11187 6.29038 6.45951 6.70510 7.26162 7.35663 7.55439 7.66163 8.04078 8.06711 8.61882 9.18233 9.54984 10.06438 10.76572 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.023739 B = 0.001645 C = 0.001580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.196636 B =17013.553116 C =17715.468700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.013 4.013 3 C -0.187 4.187 4 C -0.244 4.244 5 C 0.592 3.408 6 O -0.545 6.545 7 N -0.708 5.708 8 C 0.123 3.877 9 H 0.115 0.885 10 C -0.148 4.148 11 C 0.062 3.938 12 H 0.076 0.924 13 N -0.654 5.654 14 C 0.049 3.951 15 C 0.440 3.560 16 O -0.585 6.585 17 N -0.563 5.563 18 C -0.300 4.300 19 H 0.102 0.898 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.931 3.069 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.274 1.274 26 C -0.137 4.137 27 C 0.077 3.923 28 C -0.082 4.082 29 O -0.175 6.175 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.157 0.843 34 H 0.402 0.598 35 H 0.094 0.906 36 H 0.074 0.926 37 H 0.350 0.650 38 H 0.086 0.914 39 H 0.044 0.956 40 H 0.392 0.608 41 H 0.272 0.728 42 H 0.068 0.932 43 H 0.094 0.906 44 H 0.089 0.911 45 H 0.077 0.923 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.667 -24.813 -10.912 29.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.061 4.061 3 C -0.206 4.206 4 C -0.248 4.248 5 C 0.380 3.620 6 O -0.424 6.424 7 N -0.358 5.358 8 C 0.018 3.982 9 H 0.133 0.867 10 C -0.187 4.187 11 C -0.049 4.049 12 H 0.094 0.906 13 N -0.287 5.287 14 C -0.083 4.083 15 C 0.226 3.774 16 O -0.469 6.469 17 N -0.200 5.200 18 C -0.430 4.430 19 H 0.120 0.880 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.758 3.242 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.176 4.176 27 C 0.024 3.976 28 C -0.138 4.138 29 O -0.072 6.072 30 H 0.095 0.905 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.175 0.825 34 H 0.237 0.763 35 H 0.113 0.887 36 H 0.092 0.908 37 H 0.171 0.829 38 H 0.104 0.896 39 H 0.062 0.938 40 H 0.226 0.774 41 H 0.082 0.918 42 H 0.087 0.913 43 H 0.112 0.888 44 H 0.107 0.893 45 H 0.095 0.905 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -11.830 -25.415 -10.278 29.858 hybrid contribution 0.434 1.514 -0.265 1.597 sum -11.396 -23.901 -10.543 28.501 Atomic orbital electron populations 1.20357 0.84626 1.04205 1.03928 1.22252 0.94028 0.83657 1.06173 1.22582 0.90732 0.99605 1.07670 1.21143 0.93846 0.93321 1.16515 1.17215 0.87302 0.81970 0.75500 1.90747 1.28792 1.71898 1.50976 1.45747 1.09753 1.05542 1.74763 1.22404 0.88110 0.89668 0.98050 0.86680 1.23625 1.01574 0.94927 0.98583 1.22800 0.97365 0.90415 0.94317 0.90641 1.60208 1.26231 1.04541 1.37693 1.21743 0.92404 0.95003 0.99187 1.19826 0.87005 0.85971 0.84606 1.90516 1.17182 1.76669 1.62546 1.41865 1.10056 1.17494 1.50585 1.19656 0.96117 0.94127 1.33097 0.87985 1.25266 0.95004 0.99975 0.97698 1.69607 1.02144 1.38150 1.44380 0.85911 0.77930 0.81099 0.79232 1.19892 1.20980 1.19942 1.23581 1.02554 0.94978 0.96530 1.22795 0.82896 0.94082 0.97827 1.20623 0.92092 0.96598 1.04505 1.83710 1.16202 1.35698 1.71611 0.90464 0.89368 0.89436 0.82539 0.76346 0.88729 0.90760 0.82940 0.89578 0.93782 0.77440 0.91823 0.91275 0.88770 0.89272 0.90463 0.87209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.32 10.40 36.01 0.37 0.06 16 2 C -0.01 -0.10 7.28 -35.74 -0.26 -0.36 16 3 C -0.19 -1.57 10.48 -37.45 -0.39 -1.96 16 4 C -0.24 -2.58 6.31 -103.27 -0.65 -3.23 16 5 C 0.59 7.02 7.81 -12.54 -0.10 6.92 16 6 O -0.54 -7.80 14.45 5.27 0.08 -7.73 16 7 N -0.71 -7.06 5.35 -54.10 -0.29 -7.35 16 8 C 0.12 1.28 4.24 -67.12 -0.28 0.99 16 9 H 0.12 1.28 7.46 -51.93 -0.39 0.89 16 10 C -0.15 -1.44 7.40 -25.92 -0.19 -1.63 16 11 C 0.06 0.75 4.14 -66.90 -0.28 0.47 16 12 H 0.08 0.86 7.87 -51.93 -0.41 0.45 16 13 N -0.65 -10.31 6.18 -107.13 -0.66 -10.97 16 14 C 0.05 0.87 6.01 -4.97 -0.03 0.84 16 15 C 0.44 10.43 7.82 -10.99 -0.09 10.34 16 16 O -0.58 -15.87 15.78 5.54 0.09 -15.79 16 17 N -0.56 -14.36 5.29 -10.96 -0.06 -14.42 16 18 C -0.30 -8.42 9.68 -14.93 -0.14 -8.57 16 19 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 20 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 21 N -0.90 -24.62 13.05 55.50 0.72 -23.89 16 22 Si 0.93 21.11 29.55 -169.99 -5.02 16.09 16 23 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 26 C -0.14 -1.62 7.68 -25.92 -0.20 -1.82 16 27 C 0.08 0.77 7.37 -34.97 -0.26 0.51 16 28 C -0.08 -0.64 9.89 36.01 0.36 -0.28 16 29 O -0.18 -1.67 10.52 7.67 0.08 -1.59 16 30 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 33 H 0.16 0.95 7.74 -52.49 -0.41 0.54 16 34 H 0.40 3.22 7.90 -40.82 -0.32 2.90 16 35 H 0.09 0.90 8.12 -51.93 -0.42 0.47 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.35 5.62 8.25 -39.29 -0.32 5.30 16 38 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 39 H 0.04 0.70 8.13 -51.93 -0.42 0.28 16 40 H 0.39 9.56 7.90 -40.82 -0.32 9.24 16 41 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 42 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 44 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.11 0.98 6.48 -51.93 -0.34 0.65 16 LS Contribution 392.11 15.07 5.91 5.91 Total: -1.00 -34.07 392.11 -8.06 -42.13 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: -6.67 Total: 14.81 kcal Atomic # 6 Polarization: 5.02 SS G_CDS: -2.24 Total: 2.78 kcal Atomic # 7 Polarization: -56.34 SS G_CDS: -0.29 Total: -56.63 kcal Atomic # 8 Polarization: -25.35 SS G_CDS: 0.24 Total: -25.10 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.07 -8.06 -42.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713186416.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.476 kcal (2) G-P(sol) polarization free energy of solvation -34.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds