Wall clock time and date at job start Tue Mar 31 2020 19:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34184 * 125.43077 * 2 1 4 4 C 1.47024 * 105.95004 * 180.14582 * 3 2 1 5 5 C 1.47383 * 127.19051 * 179.83515 * 4 3 2 6 6 O 1.21612 * 119.99964 * 179.68630 * 5 4 3 7 7 N 1.34777 * 119.99856 * 359.67477 * 5 4 3 8 8 C 1.46501 * 119.99684 * 180.02562 * 7 5 4 9 9 H 1.08996 * 112.90771 * 23.74984 * 8 7 5 10 10 C 1.53783 * 113.61181 * 155.00346 * 8 7 5 11 11 C 1.53784 * 87.07820 * 139.98196 * 10 8 7 12 12 H 1.09000 * 113.61513 * 89.20317 * 11 10 8 13 13 N 1.46901 * 113.61130 * 220.01710 * 11 10 8 14 14 C 1.46905 * 110.99870 * 205.00056 * 13 11 10 15 15 C 1.50697 * 109.47066 * 180.02562 * 14 13 11 16 16 O 1.21297 * 120.00124 * 0.02562 * 15 14 13 17 17 N 1.34773 * 120.00196 * 180.02562 * 15 14 13 18 18 C 1.37100 * 120.00290 * 180.02562 * 17 15 14 19 19 H 1.07990 * 119.99768 * 359.97438 * 18 17 15 20 20 C 1.38956 * 119.99812 * 180.02562 * 18 17 15 21 21 N 1.31408 * 119.99864 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99403 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47078 * 60.00286 * 22 20 18 24 24 H 1.48505 * 109.46585 * 180.02562 * 22 20 18 25 25 H 1.48495 * 109.47705 * 299.99905 * 22 20 18 26 26 C 1.53774 * 87.08351 * 334.56644 * 11 10 8 27 27 C 1.36416 * 105.61666 * 359.56721 * 4 3 2 28 28 C 1.50700 * 125.80011 * 180.26231 * 27 4 3 29 29 O 1.33648 * 108.39529 * 0.26532 * 27 4 3 30 30 H 1.09006 * 109.46179 * 180.31469 * 1 2 3 31 31 H 1.08999 * 109.47419 * 300.31105 * 1 2 3 32 32 H 1.08992 * 109.47354 * 60.31838 * 1 2 3 33 33 H 1.08000 * 127.02775 * 359.97438 * 3 2 1 34 34 H 0.96997 * 120.00324 * 0.02562 * 7 5 4 35 35 H 1.08992 * 113.61655 * 25.43531 * 10 8 7 36 36 H 1.08995 * 113.61334 * 254.52612 * 10 8 7 37 37 H 1.00901 * 111.00067 * 328.95231 * 13 11 10 38 38 H 1.09001 * 109.46798 * 300.00327 * 14 13 11 39 39 H 1.08998 * 109.46961 * 60.00043 * 14 13 11 40 40 H 0.97009 * 119.99629 * 359.97438 * 17 15 14 41 41 H 0.97004 * 119.99642 * 179.97438 * 21 20 18 42 42 H 1.09002 * 113.61535 * 139.97851 * 26 11 10 43 43 H 1.09003 * 113.61739 * 270.88498 * 26 11 10 44 44 H 1.09001 * 109.47127 * 90.00225 * 28 27 4 45 45 H 1.09003 * 109.47031 * 210.00080 * 28 27 4 46 46 H 1.09000 * 109.47538 * 330.00320 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2849 1.0934 0.0000 4 6 3.6710 0.6030 -0.0036 5 6 4.9024 1.4128 -0.0083 6 8 5.9891 0.8670 -0.0052 7 7 4.8241 2.7583 -0.0164 8 6 6.0482 3.5632 -0.0217 9 1 6.9074 3.0260 -0.4231 10 6 5.8609 4.9651 -0.6255 11 6 6.7767 5.4843 0.4956 12 1 7.8350 5.4737 0.2350 13 7 6.3419 6.7673 1.0637 14 6 7.4749 7.4927 1.6539 15 6 6.9912 8.8003 2.2257 16 8 5.8179 9.0986 2.1495 17 7 7.8621 9.6385 2.8217 18 6 7.4220 10.8280 3.3424 19 1 6.3774 11.0935 3.2745 20 6 8.3202 11.6924 3.9564 21 7 9.5913 11.3694 4.0384 22 14 7.7205 13.3133 4.6651 23 1 6.7030 13.0487 5.7139 24 1 8.8662 14.0473 5.2600 25 1 7.1158 14.1327 3.5844 26 6 6.3306 4.2638 1.3179 27 6 3.5791 -0.7580 0.0045 28 6 4.7392 -1.7198 0.0102 29 8 2.2854 -1.0933 0.0065 30 1 -0.3632 -1.0278 0.0056 31 1 -0.3634 0.5186 0.8872 32 1 -0.3633 0.5088 -0.8927 33 1 1.9594 2.1231 -0.0004 34 1 3.9573 3.1937 -0.0187 35 1 4.8380 5.3355 -0.5603 36 1 6.2881 5.0716 -1.6225 37 1 5.8744 7.3304 0.3692 38 1 7.9176 6.8910 2.4477 39 1 8.2226 7.6864 0.8848 40 1 8.8004 9.3998 2.8829 41 1 10.2184 11.9730 4.4667 42 1 7.1368 3.8041 1.8895 43 1 5.4359 4.4424 1.9144 44 1 5.0189 -1.9457 1.0392 45 1 4.4508 -2.6399 -0.4982 46 1 5.5870 -1.2697 -0.5063 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713186416.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:20 Heat of formation + Delta-G solvation = -68.787446 kcal Electronic energy + Delta-G solvation = -27294.202394 eV Core-core repulsion = 23184.765813 eV Total energy + Delta-G solvation = -4109.436582 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.62129 -41.07165 -40.14015 -39.26705 -36.13681 -35.48128 -34.35229 -33.85596 -33.42458 -33.14444 -30.34835 -28.50102 -26.69925 -26.61511 -25.90579 -24.70153 -23.25429 -21.80897 -21.32465 -21.04361 -20.16246 -19.85782 -18.29689 -17.89814 -17.52392 -17.22847 -16.84790 -16.73768 -16.43122 -16.19800 -15.85749 -15.64396 -15.55171 -15.09357 -14.63872 -14.43209 -14.28164 -14.16158 -14.09807 -13.82088 -13.50262 -13.48270 -13.37921 -13.26973 -13.21708 -13.11842 -12.86354 -12.52707 -12.43481 -12.21738 -12.13744 -11.93912 -11.54497 -11.49308 -11.03442 -10.82828 -10.33427 -10.03720 -10.01649 -9.37625 -9.31098 -8.46322 -5.95309 0.28880 1.01143 1.40198 1.42008 1.53098 1.71304 2.05434 2.20157 2.27551 2.30425 2.99244 3.20985 3.47517 3.49307 3.55215 3.67406 3.77494 3.84508 3.95660 4.04158 4.26127 4.31454 4.43072 4.47104 4.53913 4.56309 4.59536 4.61516 4.68959 4.74881 4.80394 4.84465 4.91615 4.99711 5.04351 5.08242 5.16219 5.23796 5.40828 5.41972 5.57091 5.92727 6.04311 6.14881 6.43674 6.54021 6.60169 7.12417 7.18484 7.56333 8.11332 8.70760 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.023739 B = 0.001645 C = 0.001580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.196636 B =17013.553116 C =17715.468700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.016 4.016 3 C -0.195 4.195 4 C -0.267 4.267 5 C 0.588 3.412 6 O -0.576 6.576 7 N -0.699 5.699 8 C 0.129 3.871 9 H 0.110 0.890 10 C -0.132 4.132 11 C 0.060 3.940 12 H 0.089 0.911 13 N -0.667 5.667 14 C 0.064 3.936 15 C 0.437 3.563 16 O -0.623 6.623 17 N -0.573 5.573 18 C -0.336 4.336 19 H 0.080 0.920 20 C -0.014 4.014 21 N -0.920 5.920 22 Si 0.994 3.006 23 H -0.272 1.272 24 H -0.271 1.271 25 H -0.271 1.271 26 C -0.138 4.138 27 C 0.065 3.935 28 C -0.080 4.080 29 O -0.183 6.183 30 H 0.083 0.917 31 H 0.101 0.899 32 H 0.104 0.896 33 H 0.178 0.822 34 H 0.412 0.588 35 H 0.099 0.901 36 H 0.091 0.909 37 H 0.348 0.652 38 H 0.099 0.901 39 H 0.069 0.931 40 H 0.396 0.604 41 H 0.278 0.722 42 H 0.064 0.936 43 H 0.082 0.918 44 H 0.094 0.906 45 H 0.098 0.902 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.411 -25.070 -11.475 30.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.064 4.064 3 C -0.214 4.214 4 C -0.271 4.271 5 C 0.377 3.623 6 O -0.458 6.458 7 N -0.349 5.349 8 C 0.024 3.976 9 H 0.128 0.872 10 C -0.170 4.170 11 C -0.050 4.050 12 H 0.107 0.893 13 N -0.299 5.299 14 C -0.069 4.069 15 C 0.225 3.775 16 O -0.510 6.510 17 N -0.211 5.211 18 C -0.465 4.465 19 H 0.098 0.902 20 C -0.213 4.213 21 N -0.561 5.561 22 Si 0.818 3.182 23 H -0.198 1.198 24 H -0.195 1.195 25 H -0.196 1.196 26 C -0.178 4.178 27 C 0.012 3.988 28 C -0.136 4.136 29 O -0.080 6.080 30 H 0.102 0.898 31 H 0.120 0.880 32 H 0.122 0.878 33 H 0.195 0.805 34 H 0.249 0.751 35 H 0.118 0.882 36 H 0.110 0.890 37 H 0.168 0.832 38 H 0.117 0.883 39 H 0.087 0.913 40 H 0.230 0.770 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.100 0.900 44 H 0.113 0.887 45 H 0.116 0.884 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -12.576 -25.681 -10.850 30.584 hybrid contribution 0.619 1.527 -0.095 1.651 sum -11.958 -24.153 -10.946 29.089 Atomic orbital electron populations 1.20544 0.81957 1.05152 1.05333 1.22997 0.95499 0.83085 1.04814 1.22845 0.89689 1.00878 1.08015 1.21249 0.94338 0.93782 1.17769 1.17461 0.87358 0.82453 0.75002 1.90723 1.29964 1.72528 1.52596 1.45667 1.10201 1.05057 1.73969 1.22271 0.88198 0.89980 0.97158 0.87175 1.23533 1.01424 0.93479 0.98608 1.22908 0.98601 0.88325 0.95214 0.89345 1.60181 1.25878 1.05444 1.38433 1.21598 0.93335 0.91843 1.00086 1.20888 0.86261 0.87272 0.83080 1.90483 1.18918 1.77922 1.63640 1.41944 1.10485 1.17422 1.51204 1.19646 0.95570 0.96006 1.35292 0.90241 1.26060 0.95063 1.02863 0.97351 1.69670 1.02804 1.39244 1.44375 0.84974 0.77786 0.77048 0.78439 1.19768 1.19524 1.19596 1.23556 1.01901 0.95311 0.97031 1.23156 0.83546 0.94439 0.97630 1.20633 0.91049 0.96990 1.04921 1.83724 1.16127 1.36504 1.71633 0.89765 0.88044 0.87786 0.80507 0.75135 0.88236 0.89006 0.83215 0.88329 0.91302 0.76998 0.91303 0.91745 0.89982 0.88721 0.88364 0.88627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.46 10.40 71.24 0.74 0.28 16 2 C -0.02 -0.23 7.28 24.76 0.18 -0.05 16 3 C -0.20 -3.06 10.48 23.65 0.25 -2.81 16 4 C -0.27 -5.57 6.31 -18.99 -0.12 -5.69 16 5 C 0.59 13.88 7.81 86.65 0.68 14.56 16 6 O -0.58 -16.77 14.45 -4.07 -0.06 -16.83 16 7 N -0.70 -13.34 5.35 -443.33 -2.37 -15.71 16 8 C 0.13 2.54 4.24 45.52 0.19 2.73 16 9 H 0.11 2.35 7.46 -2.39 -0.02 2.33 16 10 C -0.13 -2.28 7.40 31.12 0.23 -2.05 16 11 C 0.06 1.33 4.14 45.44 0.19 1.52 16 12 H 0.09 1.79 7.87 -2.39 -0.02 1.77 16 13 N -0.67 -20.18 6.18 -492.85 -3.05 -23.23 16 14 C 0.06 2.17 6.01 85.55 0.51 2.69 16 15 C 0.44 20.80 7.82 87.66 0.69 21.49 16 16 O -0.62 -34.36 15.78 -3.08 -0.05 -34.41 16 17 N -0.57 -29.56 5.29 -306.99 -1.62 -31.18 16 18 C -0.34 -19.13 9.68 84.04 0.81 -18.32 16 19 H 0.08 4.81 7.16 -2.92 -0.02 4.78 16 20 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 21 N -0.92 -49.84 13.05 21.66 0.28 -49.56 16 22 Si 0.99 42.96 29.55 68.60 2.03 44.99 16 23 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 24 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 25 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 26 C -0.14 -3.15 7.68 31.12 0.24 -2.91 16 27 C 0.07 1.29 7.37 25.26 0.19 1.47 16 28 C -0.08 -1.24 9.89 71.24 0.70 -0.53 16 29 O -0.18 -3.34 10.52 4.54 0.05 -3.29 16 30 H 0.08 0.42 8.14 -2.38 -0.02 0.40 16 31 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 33 H 0.18 1.82 7.74 -2.91 -0.02 1.80 16 34 H 0.41 6.07 7.90 -92.71 -0.73 5.34 16 35 H 0.10 1.67 8.12 -2.39 -0.02 1.65 16 36 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.35 10.79 8.25 -89.69 -0.74 10.05 16 38 H 0.10 3.14 8.14 -2.39 -0.02 3.12 16 39 H 0.07 2.03 8.13 -2.39 -0.02 2.01 16 40 H 0.40 19.42 7.90 -92.70 -0.73 18.69 16 41 H 0.28 14.11 8.31 -92.71 -0.77 13.33 16 42 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 44 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.10 1.78 6.48 -2.39 -0.02 1.76 16 Total: -1.00 -74.25 392.11 -0.01 -74.26 By element: Atomic # 1 Polarization: 44.00 SS G_CDS: -1.16 Total: 42.84 kcal Atomic # 6 Polarization: 6.17 SS G_CDS: 5.95 Total: 12.12 kcal Atomic # 7 Polarization: -112.92 SS G_CDS: -6.76 Total: -119.68 kcal Atomic # 8 Polarization: -54.47 SS G_CDS: -0.06 Total: -54.53 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -74.25 -0.01 -74.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713186416.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.470 kcal (2) G-P(sol) polarization free energy of solvation -74.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds