Wall clock time and date at job start Tue Mar 31 2020 20:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50695 * 109.46734 * 2 1 4 4 O 1.33654 * 125.80362 * 270.18822 * 3 2 1 5 5 C 1.34219 * 110.90739 * 180.28927 * 4 3 2 6 6 C 1.34175 * 109.12818 * 359.72508 * 5 4 3 7 7 C 1.36423 * 125.80322 * 90.00141 * 3 2 1 8 8 C 1.47377 * 127.18543 * 359.97438 * 7 3 2 9 9 O 1.21605 * 120.00589 * 359.97438 * 8 7 3 10 10 N 1.34784 * 119.99549 * 179.70900 * 8 7 3 11 11 C 1.46499 * 119.99971 * 179.97438 * 10 8 7 12 12 C 1.52992 * 109.47267 * 180.02562 * 11 10 8 13 13 C 1.53937 * 113.73549 * 271.72886 * 12 11 10 14 14 N 1.47957 * 86.18422 * 221.92065 * 13 12 11 15 15 C 1.46894 * 111.00384 * 137.57702 * 14 13 12 16 16 C 1.50705 * 109.46820 * 70.64348 * 15 14 13 17 17 O 1.21292 * 120.00124 * 359.97438 * 16 15 14 18 18 N 1.34781 * 120.00045 * 180.02562 * 16 15 14 19 19 C 1.37094 * 119.99966 * 179.97438 * 18 16 15 20 20 H 1.07997 * 119.99971 * 0.02562 * 19 18 16 21 21 C 1.38949 * 119.99971 * 179.97438 * 19 18 16 22 22 N 1.31418 * 120.00096 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00034 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47366 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.47044 * 120.00054 * 23 21 19 26 26 H 1.48499 * 109.47233 * 239.99957 * 23 21 19 27 27 C 1.47964 * 90.76224 * 24.68917 * 14 13 12 28 28 H 1.09004 * 109.46771 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46885 * 299.99245 * 1 2 3 30 30 H 1.08996 * 109.47146 * 59.99927 * 1 2 3 31 31 H 1.08996 * 109.46807 * 240.00229 * 2 1 3 32 32 H 1.08996 * 109.47146 * 120.00073 * 2 1 3 33 33 H 1.08002 * 125.43487 * 179.69420 * 5 4 3 34 34 H 1.07998 * 127.02884 * 179.97438 * 6 5 4 35 35 H 0.96999 * 120.00044 * 359.97438 * 10 8 7 36 36 H 1.09004 * 109.47024 * 300.00310 * 11 10 8 37 37 H 1.09005 * 109.47136 * 59.99926 * 11 10 8 38 38 H 1.09000 * 112.94198 * 43.43482 * 12 11 10 39 39 H 1.09006 * 113.75481 * 336.23935 * 13 12 11 40 40 H 1.08993 * 113.76230 * 107.59845 * 13 12 11 41 41 H 1.08997 * 109.47761 * 190.64193 * 15 14 13 42 42 H 1.09002 * 109.47327 * 310.64367 * 15 14 13 43 43 H 0.96998 * 119.99946 * 0.02562 * 18 16 15 44 44 H 0.96998 * 120.00204 * 179.97438 * 22 21 19 45 45 H 1.09000 * 113.75868 * 220.99829 * 27 14 13 46 46 H 1.09001 * 113.76119 * 89.62809 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2895 2.1592 -1.0840 5 6 2.7288 3.3796 -0.7390 6 6 2.7643 3.4721 0.5991 7 6 2.2983 2.1732 1.1064 8 6 2.1541 1.7669 2.5157 9 8 1.7583 0.6500 2.7892 10 7 2.4661 2.6314 3.5016 11 6 2.3223 2.2278 4.9025 12 6 2.7389 3.3853 5.8121 13 6 4.2417 3.4016 6.1451 14 7 3.8313 3.7414 7.5254 15 6 4.6201 2.9885 8.5097 16 6 6.0344 3.5089 8.5239 17 8 6.3539 4.4172 7.7863 18 7 6.9445 2.9642 9.3555 19 6 8.2312 3.4373 9.3681 20 1 8.5154 4.2465 8.7118 21 6 9.1694 2.8761 10.2258 22 7 8.8234 1.8917 11.0247 23 14 10.9224 3.5211 10.2434 24 1 11.0539 4.6244 9.2581 25 1 11.2497 4.0282 11.6002 26 1 11.8571 2.4239 9.8862 27 6 2.5108 3.1097 7.3094 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.0094 4.1621 -1.4284 34 1 3.0727 4.3260 1.1841 35 1 2.7859 3.5209 3.2835 36 1 1.2827 1.9666 5.1005 37 1 2.9577 1.3641 5.0988 38 1 2.3512 4.3480 5.4792 39 1 4.7217 2.4269 6.0570 40 1 4.7942 4.1958 5.6432 41 1 4.1784 3.1098 9.4988 42 1 4.6242 1.9322 8.2407 43 1 6.6893 2.2371 9.9446 44 1 9.4784 1.4997 11.6232 45 1 1.6802 3.6709 7.7375 46 1 2.4844 2.0497 7.5618 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713901840.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:32 Heat of formation + Delta-G solvation = -28.397830 kcal Electronic energy + Delta-G solvation = -27813.262098 eV Core-core repulsion = 23705.576942 eV Total energy + Delta-G solvation = -4107.685156 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.90737 -40.26647 -39.29129 -37.71590 -35.06356 -34.23916 -33.89949 -33.08975 -31.35271 -30.73985 -29.17395 -27.47675 -25.97767 -25.09637 -24.19625 -23.24167 -22.44273 -21.14375 -20.36440 -19.42273 -19.16844 -18.13545 -17.83723 -16.62658 -16.38857 -16.18250 -16.14543 -15.45229 -15.27168 -15.11040 -14.71159 -14.62259 -14.54153 -14.18983 -13.82786 -13.65393 -13.35932 -13.21812 -13.00070 -12.87864 -12.62071 -12.50045 -12.11605 -11.90805 -11.71628 -11.49420 -11.33593 -11.31611 -11.08781 -10.64940 -10.60465 -10.35003 -10.22995 -10.14848 -10.09947 -9.51997 -9.26591 -8.89318 -8.65895 -8.23432 -7.96871 -6.42258 -3.83079 1.07605 1.72434 2.45465 3.02606 3.15716 3.16248 3.26237 3.33402 3.88550 3.98829 4.12817 4.20628 4.37797 4.50094 4.54030 4.65697 4.76320 4.91856 4.93759 5.05304 5.11350 5.16631 5.22594 5.28694 5.39369 5.41916 5.53635 5.56088 5.61163 5.63987 5.72900 5.74302 5.76871 5.83908 5.88680 5.95993 6.04712 6.20359 6.25948 6.33938 6.61960 6.69043 7.19908 7.33636 7.54757 8.04725 8.05349 8.60764 9.17426 9.53685 10.05239 10.75586 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016656 B = 0.001936 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.694075 B =14455.765217 C =15044.410386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.053 4.053 3 C 0.081 3.919 4 O -0.176 6.176 5 C -0.039 4.039 6 C -0.188 4.188 7 C -0.245 4.245 8 C 0.589 3.411 9 O -0.542 6.542 10 N -0.719 5.719 11 C 0.130 3.870 12 C -0.134 4.134 13 C 0.026 3.974 14 N -0.454 5.454 15 C 0.010 3.990 16 C 0.444 3.556 17 O -0.580 6.580 18 N -0.565 5.565 19 C -0.298 4.298 20 H 0.103 0.897 21 C 0.021 3.979 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.268 1.268 25 H -0.281 1.281 26 H -0.282 1.282 27 C 0.009 3.991 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.082 0.918 32 H 0.115 0.885 33 H 0.208 0.792 34 H 0.158 0.842 35 H 0.402 0.598 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.104 0.896 39 H 0.067 0.933 40 H 0.093 0.907 41 H 0.091 0.909 42 H 0.054 0.946 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.091 0.909 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.451 -1.630 -20.354 26.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.090 4.090 3 C 0.028 3.972 4 O -0.072 6.072 5 C -0.104 4.104 6 C -0.207 4.207 7 C -0.249 4.249 8 C 0.377 3.623 9 O -0.422 6.422 10 N -0.370 5.370 11 C 0.006 3.994 12 C -0.154 4.154 13 C -0.103 4.103 14 N -0.176 5.176 15 C -0.122 4.122 16 C 0.229 3.771 17 O -0.464 6.464 18 N -0.202 5.202 19 C -0.428 4.428 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.757 3.243 24 H -0.192 1.192 25 H -0.207 1.207 26 H -0.208 1.208 27 C -0.121 4.121 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.100 0.900 32 H 0.133 0.867 33 H 0.225 0.775 34 H 0.176 0.824 35 H 0.237 0.763 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.123 0.877 39 H 0.086 0.914 40 H 0.112 0.888 41 H 0.109 0.891 42 H 0.072 0.928 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.109 0.891 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -17.367 -1.328 -20.518 26.914 hybrid contribution 1.153 -0.300 0.467 1.280 sum -16.213 -1.628 -20.051 25.837 Atomic orbital electron populations 1.21687 0.93290 1.02709 1.02340 1.20411 0.97020 0.86382 1.05192 1.22883 0.96863 0.94350 0.83103 1.83776 1.65090 1.23284 1.35021 1.23879 1.03876 0.86233 0.96451 1.22903 1.05355 0.97855 0.94628 1.21158 1.13915 0.95955 0.93870 1.17184 0.76976 0.84368 0.83740 1.90756 1.47124 1.20229 1.84072 1.45777 1.67761 1.17403 1.06067 1.21449 1.01782 0.97112 0.79031 1.23346 0.98070 0.99008 0.94934 1.23870 0.94226 1.01339 0.90817 1.68402 1.01310 1.44833 1.03031 1.22466 0.95151 0.96091 0.98516 1.19693 0.86108 0.86483 0.84804 1.90514 1.80349 1.31773 1.43760 1.41883 1.09492 1.33243 1.35541 1.19741 0.84877 1.17239 1.20902 0.87896 1.25272 1.00442 0.96304 0.96024 1.69622 1.35825 1.24734 1.24126 0.85799 0.81660 0.78726 0.78150 1.19236 1.20734 1.20759 1.23965 0.95206 0.99094 0.93823 0.91286 0.91861 0.92674 0.89991 0.86740 0.77523 0.82423 0.76318 0.91064 0.91113 0.87737 0.91446 0.88827 0.89120 0.92778 0.77491 0.91919 0.89097 0.91078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.89 37.16 0.37 -0.71 16 2 C -0.05 -0.45 5.94 -27.88 -0.17 -0.62 16 3 C 0.08 0.81 6.63 -34.96 -0.23 0.58 16 4 O -0.18 -1.61 10.52 7.64 0.08 -1.53 16 5 C -0.04 -0.27 12.03 29.30 0.35 0.08 16 6 C -0.19 -1.52 10.60 -37.45 -0.40 -1.91 16 7 C -0.24 -2.59 6.31 -103.27 -0.65 -3.24 16 8 C 0.59 7.09 7.81 -12.54 -0.10 6.99 16 9 O -0.54 -7.87 14.85 5.27 0.08 -7.79 16 10 N -0.72 -7.31 5.55 -61.40 -0.34 -7.65 16 11 C 0.13 1.36 5.53 -4.05 -0.02 1.34 16 12 C -0.13 -1.45 3.94 -89.69 -0.35 -1.80 16 13 C 0.03 0.39 6.31 -2.77 -0.02 0.37 16 14 N -0.45 -7.38 5.95 -239.71 -1.43 -8.81 16 15 C 0.01 0.17 5.31 -4.98 -0.03 0.15 16 16 C 0.44 10.57 7.59 -10.98 -0.08 10.49 16 17 O -0.58 -15.76 15.13 5.55 0.08 -15.67 16 18 N -0.56 -14.46 5.29 -10.96 -0.06 -14.51 16 19 C -0.30 -8.37 9.68 -14.94 -0.14 -8.51 16 20 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 21 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 22 N -0.90 -24.69 13.05 55.50 0.72 -23.96 16 23 Si 0.93 21.17 29.55 -169.99 -5.02 16.14 16 24 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 25 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 C 0.01 0.10 7.54 -2.76 -0.02 0.08 16 28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.11 1.14 6.49 -51.93 -0.34 0.80 16 33 H 0.21 0.65 8.06 -52.49 -0.42 0.23 16 34 H 0.16 0.91 7.74 -52.49 -0.41 0.51 16 35 H 0.40 3.31 7.64 -40.82 -0.31 2.99 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.83 7.84 -51.93 -0.41 0.43 16 38 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.07 1.04 7.53 -51.93 -0.39 0.65 16 40 H 0.09 1.54 8.09 -51.93 -0.42 1.12 16 41 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 42 H 0.05 0.87 7.69 -51.93 -0.40 0.47 16 43 H 0.39 9.60 7.90 -40.82 -0.32 9.27 16 44 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 45 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.07 0.76 7.75 -51.93 -0.40 0.36 16 LS Contribution 389.14 15.07 5.86 5.86 Total: -1.00 -34.48 389.14 -8.32 -42.80 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: -6.71 Total: 11.36 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: -1.59 Total: 3.76 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: -1.10 Total: -54.94 kcal Atomic # 8 Polarization: -25.23 SS G_CDS: 0.24 Total: -24.99 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.48 -8.32 -42.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713901840.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.402 kcal (2) G-P(sol) polarization free energy of solvation -34.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds