Wall clock time and date at job start Tue Mar 31 2020 20:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50695 * 109.46734 * 2 1 4 4 O 1.33654 * 125.80362 * 270.18822 * 3 2 1 5 5 C 1.34219 * 110.90739 * 180.28927 * 4 3 2 6 6 C 1.34175 * 109.12818 * 359.72508 * 5 4 3 7 7 C 1.36423 * 125.80322 * 90.00141 * 3 2 1 8 8 C 1.47377 * 127.18543 * 359.97438 * 7 3 2 9 9 O 1.21605 * 120.00589 * 359.97438 * 8 7 3 10 10 N 1.34784 * 119.99549 * 179.70900 * 8 7 3 11 11 C 1.46499 * 119.99971 * 179.97438 * 10 8 7 12 12 C 1.52992 * 109.47267 * 180.02562 * 11 10 8 13 13 C 1.53937 * 113.73549 * 271.72886 * 12 11 10 14 14 N 1.47957 * 86.18422 * 221.92065 * 13 12 11 15 15 C 1.46894 * 111.00384 * 137.57702 * 14 13 12 16 16 C 1.50705 * 109.46820 * 70.64348 * 15 14 13 17 17 O 1.21292 * 120.00124 * 359.97438 * 16 15 14 18 18 N 1.34781 * 120.00045 * 180.02562 * 16 15 14 19 19 C 1.37094 * 119.99966 * 179.97438 * 18 16 15 20 20 H 1.07997 * 119.99971 * 0.02562 * 19 18 16 21 21 C 1.38949 * 119.99971 * 179.97438 * 19 18 16 22 22 N 1.31418 * 120.00096 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00034 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47366 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.47044 * 120.00054 * 23 21 19 26 26 H 1.48499 * 109.47233 * 239.99957 * 23 21 19 27 27 C 1.47964 * 90.76224 * 24.68917 * 14 13 12 28 28 H 1.09004 * 109.46771 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46885 * 299.99245 * 1 2 3 30 30 H 1.08996 * 109.47146 * 59.99927 * 1 2 3 31 31 H 1.08996 * 109.46807 * 240.00229 * 2 1 3 32 32 H 1.08996 * 109.47146 * 120.00073 * 2 1 3 33 33 H 1.08002 * 125.43487 * 179.69420 * 5 4 3 34 34 H 1.07998 * 127.02884 * 179.97438 * 6 5 4 35 35 H 0.96999 * 120.00044 * 359.97438 * 10 8 7 36 36 H 1.09004 * 109.47024 * 300.00310 * 11 10 8 37 37 H 1.09005 * 109.47136 * 59.99926 * 11 10 8 38 38 H 1.09000 * 112.94198 * 43.43482 * 12 11 10 39 39 H 1.09006 * 113.75481 * 336.23935 * 13 12 11 40 40 H 1.08993 * 113.76230 * 107.59845 * 13 12 11 41 41 H 1.08997 * 109.47761 * 190.64193 * 15 14 13 42 42 H 1.09002 * 109.47327 * 310.64367 * 15 14 13 43 43 H 0.96998 * 119.99946 * 0.02562 * 18 16 15 44 44 H 0.96998 * 120.00204 * 179.97438 * 22 21 19 45 45 H 1.09000 * 113.75868 * 220.99829 * 27 14 13 46 46 H 1.09001 * 113.76119 * 89.62809 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2895 2.1592 -1.0840 5 6 2.7288 3.3796 -0.7390 6 6 2.7643 3.4721 0.5991 7 6 2.2983 2.1732 1.1064 8 6 2.1541 1.7669 2.5157 9 8 1.7583 0.6500 2.7892 10 7 2.4661 2.6314 3.5016 11 6 2.3223 2.2278 4.9025 12 6 2.7389 3.3853 5.8121 13 6 4.2417 3.4016 6.1451 14 7 3.8313 3.7414 7.5254 15 6 4.6201 2.9885 8.5097 16 6 6.0344 3.5089 8.5239 17 8 6.3539 4.4172 7.7863 18 7 6.9445 2.9642 9.3555 19 6 8.2312 3.4373 9.3681 20 1 8.5154 4.2465 8.7118 21 6 9.1694 2.8761 10.2258 22 7 8.8234 1.8917 11.0247 23 14 10.9224 3.5211 10.2434 24 1 11.0539 4.6244 9.2581 25 1 11.2497 4.0282 11.6002 26 1 11.8571 2.4239 9.8862 27 6 2.5108 3.1097 7.3094 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.0094 4.1621 -1.4284 34 1 3.0727 4.3260 1.1841 35 1 2.7859 3.5209 3.2835 36 1 1.2827 1.9666 5.1005 37 1 2.9577 1.3641 5.0988 38 1 2.3512 4.3480 5.4792 39 1 4.7217 2.4269 6.0570 40 1 4.7942 4.1958 5.6432 41 1 4.1784 3.1098 9.4988 42 1 4.6242 1.9322 8.2407 43 1 6.6893 2.2371 9.9446 44 1 9.4784 1.4997 11.6232 45 1 1.6802 3.6709 7.7375 46 1 2.4844 2.0497 7.5618 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713901840.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:31 Heat of formation + Delta-G solvation = -55.112078 kcal Electronic energy + Delta-G solvation = -27814.420515 eV Core-core repulsion = 23705.576942 eV Total energy + Delta-G solvation = -4108.843573 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.56309 -41.42122 -40.34328 -39.48065 -36.09841 -35.82661 -34.94115 -33.79431 -33.32435 -32.01712 -29.86100 -28.70052 -27.07420 -26.78834 -25.14235 -24.08432 -23.47426 -21.89101 -21.29223 -20.96724 -20.29631 -19.89744 -18.82222 -17.86634 -17.35975 -17.29006 -16.97361 -16.63897 -16.57532 -16.34396 -16.12313 -15.71307 -15.56735 -15.31420 -15.21414 -14.91223 -14.47302 -14.27002 -13.90007 -13.71894 -13.59613 -13.55525 -13.42145 -13.27341 -13.07822 -12.86785 -12.51387 -12.43820 -12.30740 -12.13378 -11.98332 -11.77986 -11.67064 -11.51504 -11.04408 -10.85002 -10.34975 -10.13867 -10.03674 -9.69230 -9.54955 -8.48822 -5.97698 0.31525 1.12430 1.34784 1.39917 1.54260 1.81315 2.02487 2.21631 2.27386 2.31528 2.81722 3.17593 3.26193 3.45145 3.55097 3.68229 3.77909 3.87498 4.14656 4.17889 4.19466 4.29521 4.29970 4.38729 4.44519 4.49517 4.51780 4.58956 4.63654 4.69583 4.74557 4.85940 4.89027 4.95126 5.01890 5.08748 5.21119 5.28371 5.36831 5.38051 5.40937 5.46453 5.88976 6.03528 6.06996 6.51690 6.57725 7.10427 7.18021 7.53503 8.09022 8.68874 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016656 B = 0.001936 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.694075 B =14455.765217 C =15044.410386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.054 4.054 3 C 0.070 3.930 4 O -0.182 6.182 5 C -0.031 4.031 6 C -0.200 4.200 7 C -0.269 4.269 8 C 0.584 3.416 9 O -0.575 6.575 10 N -0.712 5.712 11 C 0.137 3.863 12 C -0.105 4.105 13 C 0.018 3.982 14 N -0.481 5.481 15 C 0.022 3.978 16 C 0.440 3.560 17 O -0.618 6.618 18 N -0.575 5.575 19 C -0.332 4.332 20 H 0.078 0.922 21 C -0.015 4.015 22 N -0.921 5.921 23 Si 0.994 3.006 24 H -0.273 1.273 25 H -0.270 1.270 26 H -0.270 1.270 27 C 0.016 3.984 28 H 0.082 0.918 29 H 0.043 0.957 30 H 0.063 0.937 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.248 0.752 34 H 0.178 0.822 35 H 0.412 0.588 36 H 0.081 0.919 37 H 0.057 0.943 38 H 0.120 0.880 39 H 0.057 0.943 40 H 0.070 0.930 41 H 0.109 0.891 42 H 0.074 0.926 43 H 0.396 0.604 44 H 0.278 0.722 45 H 0.112 0.888 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.239 -1.289 -21.079 27.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.091 4.091 3 C 0.016 3.984 4 O -0.078 6.078 5 C -0.096 4.096 6 C -0.219 4.219 7 C -0.273 4.273 8 C 0.373 3.627 9 O -0.456 6.456 10 N -0.363 5.363 11 C 0.013 3.987 12 C -0.124 4.124 13 C -0.111 4.111 14 N -0.204 5.204 15 C -0.110 4.110 16 C 0.227 3.773 17 O -0.504 6.504 18 N -0.213 5.213 19 C -0.462 4.462 20 H 0.096 0.904 21 C -0.215 4.215 22 N -0.562 5.562 23 Si 0.817 3.183 24 H -0.198 1.198 25 H -0.195 1.195 26 H -0.196 1.196 27 C -0.113 4.113 28 H 0.101 0.899 29 H 0.062 0.938 30 H 0.082 0.918 31 H 0.118 0.882 32 H 0.114 0.886 33 H 0.263 0.737 34 H 0.195 0.805 35 H 0.249 0.751 36 H 0.099 0.901 37 H 0.075 0.925 38 H 0.138 0.862 39 H 0.075 0.925 40 H 0.089 0.911 41 H 0.127 0.873 42 H 0.092 0.908 43 H 0.230 0.770 44 H 0.087 0.913 45 H 0.130 0.870 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -18.172 -0.982 -21.231 27.963 hybrid contribution 1.377 -0.372 0.650 1.568 sum -16.795 -1.353 -20.581 26.598 Atomic orbital electron populations 1.21645 0.92601 1.03445 1.01753 1.20417 0.97584 0.85965 1.05120 1.23119 0.96983 0.94943 0.83334 1.83789 1.65135 1.24076 1.34756 1.24688 1.01997 0.85929 0.96948 1.23185 1.05804 0.97530 0.95346 1.21274 1.15209 0.97590 0.93242 1.17470 0.76515 0.84075 0.84628 1.90732 1.48723 1.21533 1.84652 1.45719 1.67159 1.17666 1.05739 1.21346 1.01932 0.96379 0.79074 1.23139 0.94558 0.99841 0.94862 1.23832 0.96726 0.99873 0.90644 1.68403 1.03218 1.45839 1.02925 1.22362 0.91315 0.96950 1.00335 1.20771 0.88080 0.85371 0.83045 1.90480 1.81625 1.33404 1.44917 1.41966 1.09298 1.33672 1.36323 1.19684 0.86697 1.17870 1.21925 0.90374 1.26067 1.03993 0.96245 0.95144 1.69680 1.37215 1.25076 1.24193 0.84860 0.76891 0.78182 0.78335 1.19789 1.19536 1.19557 1.24088 0.93195 1.00069 0.93926 0.89925 0.93792 0.91754 0.88162 0.88618 0.73656 0.80464 0.75146 0.90116 0.92490 0.86152 0.92482 0.91150 0.87263 0.90775 0.77048 0.91286 0.86992 0.89608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.89 71.98 0.71 -1.32 16 2 C -0.05 -0.92 5.94 29.85 0.18 -0.74 16 3 C 0.07 1.37 6.63 25.26 0.17 1.54 16 4 O -0.18 -3.08 10.52 4.42 0.05 -3.03 16 5 C -0.03 -0.37 12.03 66.89 0.80 0.44 16 6 C -0.20 -2.92 10.60 23.65 0.25 -2.67 16 7 C -0.27 -5.60 6.31 -18.99 -0.12 -5.72 16 8 C 0.58 14.09 7.81 86.65 0.68 14.77 16 9 O -0.57 -17.05 14.85 -4.05 -0.06 -17.11 16 10 N -0.71 -13.95 5.55 -466.42 -2.59 -16.54 16 11 C 0.14 2.69 5.53 86.38 0.48 3.17 16 12 C -0.10 -2.08 3.94 -10.15 -0.04 -2.12 16 13 C 0.02 0.54 6.31 86.41 0.55 1.09 16 14 N -0.48 -15.11 5.95 -912.31 -5.43 -20.54 16 15 C 0.02 0.77 5.31 85.56 0.45 1.22 16 16 C 0.44 21.31 7.59 87.66 0.67 21.98 16 17 O -0.62 -34.61 15.13 -3.07 -0.05 -34.65 16 18 N -0.58 -30.05 5.29 -306.98 -1.62 -31.67 16 19 C -0.33 -19.13 9.68 84.04 0.81 -18.32 16 20 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 21 C -0.01 -0.81 5.50 84.93 0.47 -0.34 16 22 N -0.92 -50.20 13.05 21.66 0.28 -49.92 16 23 Si 0.99 43.37 29.55 68.60 2.03 45.39 16 24 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 25 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 26 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 27 C 0.02 0.33 7.54 86.41 0.65 0.98 16 28 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.10 2.00 6.49 -2.39 -0.02 1.99 16 33 H 0.25 0.67 8.06 -2.91 -0.02 0.65 16 34 H 0.18 1.71 7.74 -2.91 -0.02 1.68 16 35 H 0.41 6.32 7.64 -92.71 -0.71 5.61 16 36 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 37 H 0.06 1.31 7.84 -2.38 -0.02 1.30 16 38 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.06 1.79 7.53 -2.38 -0.02 1.77 16 40 H 0.07 2.38 8.09 -2.39 -0.02 2.36 16 41 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 42 H 0.07 2.29 7.69 -2.39 -0.02 2.27 16 43 H 0.40 19.64 7.90 -92.71 -0.73 18.91 16 44 H 0.28 14.12 8.31 -92.71 -0.77 13.35 16 45 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 46 H 0.09 1.57 7.75 -2.39 -0.02 1.55 16 Total: -1.00 -76.69 389.14 -1.11 -77.79 By element: Atomic # 1 Polarization: 36.75 SS G_CDS: -0.42 Total: 36.33 kcal Atomic # 6 Polarization: 7.25 SS G_CDS: 6.70 Total: 13.95 kcal Atomic # 7 Polarization: -109.32 SS G_CDS: -9.36 Total: -118.67 kcal Atomic # 8 Polarization: -54.74 SS G_CDS: -0.06 Total: -54.80 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.39 kcal Total: -76.69 -1.11 -77.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713901840.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.681 kcal (2) G-P(sol) polarization free energy of solvation -76.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds