Wall clock time and date at job start Tue Mar 31 2020 20:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50693 * 109.47216 * 2 1 4 4 O 1.33654 * 125.80166 * 270.32177 * 3 2 1 5 5 C 1.34212 * 110.91258 * 180.13725 * 4 3 2 6 6 C 1.34178 * 109.12070 * 359.58196 * 5 4 3 7 7 C 1.36414 * 125.80470 * 89.99828 * 3 2 1 8 8 C 1.47377 * 127.19348 * 0.02562 * 7 3 2 9 9 O 1.21621 * 119.99590 * 0.02562 * 8 7 3 10 10 N 1.34779 * 120.00415 * 180.02562 * 8 7 3 11 11 C 1.46504 * 119.99955 * 179.97438 * 10 8 7 12 12 C 1.50694 * 109.46784 * 179.97438 * 11 10 8 13 13 C 1.31005 * 119.99786 * 125.00576 * 12 11 10 14 14 C 1.50704 * 119.99833 * 179.97438 * 13 12 11 15 15 N 1.46907 * 109.46565 * 124.99760 * 14 13 12 16 16 C 1.46902 * 110.99460 * 179.97438 * 15 14 13 17 17 C 1.50700 * 109.46835 * 180.02562 * 16 15 14 18 18 O 1.21286 * 120.00257 * 359.97438 * 17 16 15 19 19 N 1.34780 * 119.99732 * 180.02562 * 17 16 15 20 20 C 1.37103 * 119.99977 * 180.02562 * 19 17 16 21 21 H 1.08004 * 119.99637 * 359.97438 * 20 19 17 22 22 C 1.38944 * 120.00059 * 180.02562 * 20 19 17 23 23 N 1.31414 * 120.00113 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00001 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47392 * 59.99507 * 24 22 20 26 26 H 1.48499 * 109.47227 * 179.97438 * 24 22 20 27 27 H 1.48506 * 109.47038 * 299.99575 * 24 22 20 28 28 H 1.08995 * 109.47588 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47429 * 300.00993 * 1 2 3 30 30 H 1.09004 * 109.47151 * 60.00003 * 1 2 3 31 31 H 1.08997 * 109.46994 * 239.99171 * 2 1 3 32 32 H 1.09000 * 109.46715 * 119.99830 * 2 1 3 33 33 H 1.08002 * 125.44314 * 179.85523 * 5 4 3 34 34 H 1.08003 * 127.02366 * 180.24497 * 6 5 4 35 35 H 0.96993 * 119.99586 * 359.97438 * 10 8 7 36 36 H 1.08991 * 109.47085 * 300.00505 * 11 10 8 37 37 H 1.09001 * 109.46825 * 60.00273 * 11 10 8 38 38 H 1.08000 * 120.00615 * 305.00362 * 12 11 10 39 39 H 1.07997 * 120.00079 * 359.97438 * 13 12 11 40 40 H 1.08999 * 109.47026 * 244.99386 * 14 13 12 41 41 H 1.08991 * 109.47032 * 5.00144 * 14 13 12 42 42 H 1.00894 * 110.99912 * 56.05244 * 15 14 13 43 43 H 1.09004 * 109.47266 * 300.00458 * 16 15 14 44 44 H 1.09001 * 109.47220 * 59.99880 * 16 15 14 45 45 H 0.97001 * 119.99840 * 359.97438 * 19 17 16 46 46 H 0.97000 * 119.99837 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 8 2.2872 2.1599 -1.0840 5 6 2.7242 3.3811 -0.7391 6 6 2.7576 3.4744 0.5990 7 6 2.2983 2.1732 1.1063 8 6 2.1551 1.7667 2.5157 9 8 1.7610 0.6491 2.7892 10 7 2.4609 2.6334 3.5015 11 6 2.3180 2.2295 4.9025 12 6 2.7218 3.3720 5.7983 13 6 1.8922 3.8135 6.7110 14 6 2.2963 4.9557 7.6072 15 7 1.2945 6.0265 7.5174 16 6 1.6559 7.1590 8.3804 17 6 0.6072 8.2349 8.2626 18 8 -0.3470 8.0743 7.5314 19 7 0.7303 9.3761 8.9692 20 6 -0.2240 10.3547 8.8624 21 1 -1.0741 10.2113 8.2119 22 6 -0.0969 11.5313 9.5904 23 7 0.9377 11.7060 10.3816 24 14 -1.3974 12.8644 9.4455 25 1 -2.7129 12.3207 9.8690 26 1 -1.0317 14.0096 10.3172 27 1 -1.4819 13.3223 8.0353 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5140 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.0004 4.1653 -1.4286 34 1 3.0600 4.3305 1.1839 35 1 2.7756 3.5246 3.2833 36 1 1.2799 1.9622 5.0994 37 1 2.9583 1.3697 5.0998 38 1 3.6952 3.8268 5.6880 39 1 0.9187 3.3591 6.8210 40 1 2.3610 4.6042 8.6369 41 1 3.2668 5.3388 7.2923 42 1 0.3740 5.6802 7.7424 43 1 1.7160 6.8225 9.4155 44 1 2.6222 7.5576 8.0714 45 1 1.4936 9.5047 9.5537 46 1 1.0262 12.5274 10.8900 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715808020.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:43 Heat of formation + Delta-G solvation = -49.258074 kcal Electronic energy + Delta-G solvation = -26631.258737 eV Core-core repulsion = 22522.669012 eV Total energy + Delta-G solvation = -4108.589724 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.92851 -39.63163 -38.34630 -36.76130 -35.30899 -34.31767 -33.92984 -33.36369 -32.48155 -31.22564 -29.29534 -28.46730 -26.29312 -24.67144 -23.93868 -23.18660 -22.48441 -21.16581 -20.56313 -19.73088 -19.13316 -18.18596 -17.88728 -16.63486 -16.43497 -16.20375 -16.08503 -15.57053 -15.25957 -15.07187 -14.67244 -14.64155 -14.43771 -14.08043 -13.86857 -13.77247 -13.61968 -13.28582 -13.21439 -13.01033 -12.64615 -12.50831 -12.29081 -11.91504 -11.78079 -11.59124 -11.52202 -11.35353 -11.19799 -11.03177 -10.45307 -10.29177 -10.22853 -10.17008 -9.60066 -9.51429 -9.22520 -8.90940 -8.48743 -8.07645 -7.97480 -6.43040 -3.84014 1.04429 1.70777 1.82792 2.45357 3.11168 3.17575 3.19232 3.24978 3.29484 3.89084 4.10756 4.11188 4.33525 4.47049 4.49739 4.67285 4.74281 4.85139 4.90434 5.04113 5.10649 5.14614 5.22127 5.25460 5.29480 5.36506 5.45248 5.49288 5.52502 5.62653 5.67358 5.73168 5.77369 5.87906 5.94125 5.94588 6.14512 6.23668 6.42250 6.57996 6.67057 7.14915 7.28901 7.53725 7.60300 7.98989 8.04572 8.59712 9.16321 9.52533 10.04039 10.74558 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015905 B = 0.001572 C = 0.001493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.995608 B =17812.789020 C =18750.879533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.052 4.052 3 C 0.081 3.919 4 O -0.176 6.176 5 C -0.038 4.038 6 C -0.188 4.188 7 C -0.245 4.245 8 C 0.590 3.410 9 O -0.544 6.544 10 N -0.718 5.718 11 C 0.155 3.845 12 C -0.184 4.184 13 C -0.110 4.110 14 C 0.082 3.918 15 N -0.665 5.665 16 C 0.050 3.950 17 C 0.440 3.560 18 O -0.583 6.583 19 N -0.563 5.563 20 C -0.301 4.301 21 H 0.103 0.897 22 C 0.023 3.977 23 N -0.902 5.902 24 Si 0.931 3.069 25 H -0.274 1.274 26 H -0.284 1.284 27 H -0.273 1.273 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.081 0.919 32 H 0.114 0.886 33 H 0.209 0.791 34 H 0.159 0.841 35 H 0.404 0.596 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.117 0.883 39 H 0.113 0.887 40 H 0.039 0.961 41 H 0.077 0.923 42 H 0.350 0.650 43 H 0.044 0.956 44 H 0.086 0.914 45 H 0.392 0.608 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.094 -20.932 -16.863 28.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.089 4.089 3 C 0.028 3.972 4 O -0.071 6.071 5 C -0.104 4.104 6 C -0.207 4.207 7 C -0.250 4.250 8 C 0.379 3.621 9 O -0.423 6.423 10 N -0.369 5.369 11 C 0.032 3.968 12 C -0.204 4.204 13 C -0.129 4.129 14 C -0.047 4.047 15 N -0.298 5.298 16 C -0.083 4.083 17 C 0.225 3.775 18 O -0.467 6.467 19 N -0.200 5.200 20 C -0.430 4.430 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.100 0.900 32 H 0.132 0.868 33 H 0.225 0.775 34 H 0.176 0.824 35 H 0.238 0.762 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.134 0.866 39 H 0.131 0.869 40 H 0.057 0.943 41 H 0.095 0.905 42 H 0.170 0.830 43 H 0.062 0.938 44 H 0.104 0.896 45 H 0.226 0.774 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.454 -21.464 -17.855 28.898 hybrid contribution 0.043 1.349 1.340 1.902 sum 7.498 -20.115 -16.514 27.084 Atomic orbital electron populations 1.21696 0.93212 1.02727 1.02517 1.20403 0.97095 0.86354 1.05061 1.22881 0.96802 0.94396 0.83113 1.83776 1.65114 1.23249 1.34998 1.23896 1.03844 0.86138 0.96474 1.22914 1.05440 0.97721 0.94649 1.21134 1.14136 0.95923 0.93793 1.17188 0.76866 0.84343 0.83750 1.90756 1.47098 1.20385 1.84083 1.45786 1.68134 1.17170 1.05808 1.20306 1.01708 0.95877 0.78891 1.22731 1.00559 0.99232 0.97836 1.22884 0.98740 0.95263 0.96025 1.21091 0.96663 0.90031 0.96921 1.60135 1.05403 1.07155 1.57074 1.21692 0.99416 0.92249 0.94900 1.19794 0.88525 0.84247 0.84894 1.90524 1.34068 1.80266 1.41877 1.41857 1.23817 1.14493 1.39810 1.19662 1.03617 0.94699 1.25034 0.87964 1.25262 0.97836 0.98670 0.96142 1.69605 1.29030 1.27810 1.27862 0.85909 0.80373 0.79576 0.78307 1.19919 1.20969 1.19874 0.91275 0.91782 0.92593 0.90028 0.86818 0.77462 0.82386 0.76167 0.90972 0.90768 0.86554 0.86912 0.94271 0.90496 0.83030 0.93780 0.89553 0.77446 0.91814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 9.89 37.16 0.37 -0.73 16 2 C -0.05 -0.42 5.94 -27.89 -0.17 -0.59 16 3 C 0.08 0.79 6.63 -34.97 -0.23 0.56 16 4 O -0.18 -1.58 10.52 7.66 0.08 -1.50 16 5 C -0.04 -0.27 12.03 29.30 0.35 0.09 16 6 C -0.19 -1.51 10.60 -37.45 -0.40 -1.91 16 7 C -0.25 -2.53 6.31 -103.28 -0.65 -3.18 16 8 C 0.59 6.82 7.81 -12.54 -0.10 6.72 16 9 O -0.54 -7.51 14.84 5.26 0.08 -7.43 16 10 N -0.72 -6.95 5.55 -62.58 -0.35 -7.30 16 11 C 0.15 1.46 6.11 -5.19 -0.03 1.43 16 12 C -0.18 -1.66 9.24 -36.03 -0.33 -1.99 16 13 C -0.11 -1.12 9.38 -36.03 -0.34 -1.46 16 14 C 0.08 0.95 6.13 -4.97 -0.03 0.92 16 15 N -0.67 -10.52 6.12 -116.33 -0.71 -11.23 16 16 C 0.05 0.87 6.17 -4.97 -0.03 0.83 16 17 C 0.44 10.35 7.82 -10.98 -0.09 10.27 16 18 O -0.58 -15.87 15.78 5.55 0.09 -15.78 16 19 N -0.56 -14.22 5.29 -10.96 -0.06 -14.28 16 20 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 21 H 0.10 2.99 7.16 -52.48 -0.38 2.61 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 23 N -0.90 -24.39 13.05 55.50 0.72 -23.67 16 24 Si 0.93 20.99 29.55 -169.99 -5.02 15.97 16 25 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 27 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.11 1.04 6.48 -51.93 -0.34 0.71 16 33 H 0.21 0.66 8.06 -52.49 -0.42 0.24 16 34 H 0.16 0.93 7.74 -52.48 -0.41 0.53 16 35 H 0.40 3.24 7.63 -40.82 -0.31 2.92 16 36 H 0.07 0.74 7.79 -51.93 -0.40 0.34 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.12 0.94 7.84 -52.49 -0.41 0.53 16 39 H 0.11 1.12 7.84 -52.49 -0.41 0.71 16 40 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.08 0.84 7.79 -51.93 -0.40 0.43 16 42 H 0.35 5.73 8.42 -39.29 -0.33 5.40 16 43 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 45 H 0.39 9.42 7.90 -40.82 -0.32 9.10 16 46 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 399.36 15.07 6.02 6.02 Total: -1.00 -34.00 399.36 -7.72 -41.72 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: -6.66 Total: 14.55 kcal Atomic # 6 Polarization: 4.85 SS G_CDS: -1.91 Total: 2.93 kcal Atomic # 7 Polarization: -56.08 SS G_CDS: -0.39 Total: -56.47 kcal Atomic # 8 Polarization: -24.96 SS G_CDS: 0.25 Total: -24.72 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.00 -7.72 -41.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715808020.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.538 kcal (2) G-P(sol) polarization free energy of solvation -33.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds