Wall clock time and date at job start Tue Mar 31 2020 20:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50693 * 109.47216 * 2 1 4 4 O 1.33654 * 125.80166 * 270.32177 * 3 2 1 5 5 C 1.34212 * 110.91258 * 180.13725 * 4 3 2 6 6 C 1.34178 * 109.12070 * 359.58196 * 5 4 3 7 7 C 1.36414 * 125.80470 * 89.99828 * 3 2 1 8 8 C 1.47377 * 127.19348 * 0.02562 * 7 3 2 9 9 O 1.21621 * 119.99590 * 0.02562 * 8 7 3 10 10 N 1.34779 * 120.00415 * 180.02562 * 8 7 3 11 11 C 1.46504 * 119.99955 * 179.97438 * 10 8 7 12 12 C 1.50694 * 109.46784 * 179.97438 * 11 10 8 13 13 C 1.31005 * 119.99786 * 125.00576 * 12 11 10 14 14 C 1.50704 * 119.99833 * 179.97438 * 13 12 11 15 15 N 1.46907 * 109.46565 * 124.99760 * 14 13 12 16 16 C 1.46902 * 110.99460 * 179.97438 * 15 14 13 17 17 C 1.50700 * 109.46835 * 180.02562 * 16 15 14 18 18 O 1.21286 * 120.00257 * 359.97438 * 17 16 15 19 19 N 1.34780 * 119.99732 * 180.02562 * 17 16 15 20 20 C 1.37103 * 119.99977 * 180.02562 * 19 17 16 21 21 H 1.08004 * 119.99637 * 359.97438 * 20 19 17 22 22 C 1.38944 * 120.00059 * 180.02562 * 20 19 17 23 23 N 1.31414 * 120.00113 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00001 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47392 * 59.99507 * 24 22 20 26 26 H 1.48499 * 109.47227 * 179.97438 * 24 22 20 27 27 H 1.48506 * 109.47038 * 299.99575 * 24 22 20 28 28 H 1.08995 * 109.47588 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47429 * 300.00993 * 1 2 3 30 30 H 1.09004 * 109.47151 * 60.00003 * 1 2 3 31 31 H 1.08997 * 109.46994 * 239.99171 * 2 1 3 32 32 H 1.09000 * 109.46715 * 119.99830 * 2 1 3 33 33 H 1.08002 * 125.44314 * 179.85523 * 5 4 3 34 34 H 1.08003 * 127.02366 * 180.24497 * 6 5 4 35 35 H 0.96993 * 119.99586 * 359.97438 * 10 8 7 36 36 H 1.08991 * 109.47085 * 300.00505 * 11 10 8 37 37 H 1.09001 * 109.46825 * 60.00273 * 11 10 8 38 38 H 1.08000 * 120.00615 * 305.00362 * 12 11 10 39 39 H 1.07997 * 120.00079 * 359.97438 * 13 12 11 40 40 H 1.08999 * 109.47026 * 244.99386 * 14 13 12 41 41 H 1.08991 * 109.47032 * 5.00144 * 14 13 12 42 42 H 1.00894 * 110.99912 * 56.05244 * 15 14 13 43 43 H 1.09004 * 109.47266 * 300.00458 * 16 15 14 44 44 H 1.09001 * 109.47220 * 59.99880 * 16 15 14 45 45 H 0.97001 * 119.99840 * 359.97438 * 19 17 16 46 46 H 0.97000 * 119.99837 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 8 2.2872 2.1599 -1.0840 5 6 2.7242 3.3811 -0.7391 6 6 2.7576 3.4744 0.5990 7 6 2.2983 2.1732 1.1063 8 6 2.1551 1.7667 2.5157 9 8 1.7610 0.6491 2.7892 10 7 2.4609 2.6334 3.5015 11 6 2.3180 2.2295 4.9025 12 6 2.7218 3.3720 5.7983 13 6 1.8922 3.8135 6.7110 14 6 2.2963 4.9557 7.6072 15 7 1.2945 6.0265 7.5174 16 6 1.6559 7.1590 8.3804 17 6 0.6072 8.2349 8.2626 18 8 -0.3470 8.0743 7.5314 19 7 0.7303 9.3761 8.9692 20 6 -0.2240 10.3547 8.8624 21 1 -1.0741 10.2113 8.2119 22 6 -0.0969 11.5313 9.5904 23 7 0.9377 11.7060 10.3816 24 14 -1.3974 12.8644 9.4455 25 1 -2.7129 12.3207 9.8690 26 1 -1.0317 14.0096 10.3172 27 1 -1.4819 13.3223 8.0353 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5140 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.0004 4.1653 -1.4286 34 1 3.0600 4.3305 1.1839 35 1 2.7756 3.5246 3.2833 36 1 1.2799 1.9622 5.0994 37 1 2.9583 1.3697 5.0998 38 1 3.6952 3.8268 5.6880 39 1 0.9187 3.3591 6.8210 40 1 2.3610 4.6042 8.6369 41 1 3.2668 5.3388 7.2923 42 1 0.3740 5.6802 7.7424 43 1 1.7160 6.8225 9.4155 44 1 2.6222 7.5576 8.0714 45 1 1.4936 9.5047 9.5537 46 1 1.0262 12.5274 10.8900 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715808020.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:42 Heat of formation + Delta-G solvation = -74.444371 kcal Electronic energy + Delta-G solvation = -26632.350897 eV Core-core repulsion = 22522.669012 eV Total energy + Delta-G solvation = -4109.681884 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.57187 -40.49688 -40.15699 -37.78435 -36.39640 -35.83461 -34.97809 -34.21406 -33.38374 -33.17329 -30.04682 -29.49344 -27.66584 -26.07923 -24.90298 -23.98660 -23.39008 -21.87786 -21.44408 -21.04662 -20.33137 -19.86223 -18.85185 -17.90129 -17.31356 -17.07585 -16.96586 -16.92262 -16.45204 -16.18197 -15.97677 -15.74455 -15.33188 -15.31365 -15.11189 -15.03220 -14.52801 -14.41491 -14.09900 -13.88751 -13.59441 -13.52463 -13.30041 -13.22686 -13.05738 -12.90290 -12.71654 -12.50799 -12.43383 -12.12809 -12.03556 -11.99220 -11.50554 -11.17633 -10.86096 -10.43332 -10.36008 -10.04773 -10.01318 -9.56039 -9.27436 -8.46627 -5.95536 0.30233 1.03025 1.11509 1.39984 1.42118 1.52946 1.84267 2.05207 2.28992 2.29705 2.41359 3.01151 3.20612 3.54326 3.57933 3.73813 3.79450 3.87771 4.08999 4.14091 4.28392 4.30376 4.41976 4.43378 4.47687 4.52122 4.55946 4.60563 4.66228 4.68415 4.74816 4.86768 4.93635 5.01266 5.07693 5.24757 5.33421 5.39951 5.40660 5.65509 5.76047 5.89494 6.02841 6.09714 6.37006 6.50843 6.60122 7.12433 7.16021 7.56088 8.11569 8.70361 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015905 B = 0.001572 C = 0.001493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.995608 B =17812.789020 C =18750.879533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.052 4.052 3 C 0.070 3.930 4 O -0.181 6.181 5 C -0.031 4.031 6 C -0.200 4.200 7 C -0.269 4.269 8 C 0.584 3.416 9 O -0.575 6.575 10 N -0.710 5.710 11 C 0.155 3.845 12 C -0.164 4.164 13 C -0.124 4.124 14 C 0.086 3.914 15 N -0.682 5.682 16 C 0.065 3.935 17 C 0.436 3.564 18 O -0.625 6.625 19 N -0.572 5.572 20 C -0.336 4.336 21 H 0.078 0.922 22 C -0.012 4.012 23 N -0.919 5.919 24 Si 0.993 3.007 25 H -0.272 1.272 26 H -0.270 1.270 27 H -0.272 1.272 28 H 0.084 0.916 29 H 0.039 0.961 30 H 0.062 0.938 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.247 0.753 34 H 0.177 0.823 35 H 0.412 0.588 36 H 0.061 0.939 37 H 0.077 0.923 38 H 0.133 0.867 39 H 0.110 0.890 40 H 0.053 0.947 41 H 0.089 0.911 42 H 0.344 0.656 43 H 0.069 0.931 44 H 0.107 0.893 45 H 0.397 0.603 46 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.293 -20.490 -17.465 28.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.089 4.089 3 C 0.016 3.984 4 O -0.077 6.077 5 C -0.096 4.096 6 C -0.219 4.219 7 C -0.274 4.274 8 C 0.374 3.626 9 O -0.457 6.457 10 N -0.362 5.362 11 C 0.033 3.967 12 C -0.183 4.183 13 C -0.144 4.144 14 C -0.042 4.042 15 N -0.314 5.314 16 C -0.068 4.068 17 C 0.224 3.776 18 O -0.512 6.512 19 N -0.210 5.210 20 C -0.466 4.466 21 H 0.096 0.904 22 C -0.212 4.212 23 N -0.560 5.560 24 Si 0.816 3.184 25 H -0.198 1.198 26 H -0.194 1.194 27 H -0.197 1.197 28 H 0.102 0.898 29 H 0.058 0.942 30 H 0.081 0.919 31 H 0.121 0.879 32 H 0.117 0.883 33 H 0.263 0.737 34 H 0.195 0.805 35 H 0.249 0.751 36 H 0.079 0.921 37 H 0.095 0.905 38 H 0.151 0.849 39 H 0.128 0.872 40 H 0.071 0.929 41 H 0.107 0.893 42 H 0.162 0.838 43 H 0.086 0.914 44 H 0.125 0.875 45 H 0.231 0.769 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.697 -21.014 -18.440 29.279 hybrid contribution -0.291 1.160 1.479 1.902 sum 8.406 -19.853 -16.962 27.432 Atomic orbital electron populations 1.21660 0.93003 1.03456 1.01575 1.20413 0.97213 0.85917 1.05335 1.23142 0.96877 0.95031 0.83301 1.83788 1.65160 1.24005 1.34780 1.24684 1.02051 0.85878 0.96957 1.23186 1.05936 0.97422 0.95354 1.21270 1.15368 0.97476 0.93274 1.17468 0.76462 0.84111 0.84607 1.90731 1.48630 1.21675 1.84640 1.45737 1.67473 1.17349 1.05600 1.20284 1.01184 0.96319 0.78950 1.22750 1.00840 0.98233 0.96497 1.22817 0.99166 0.95591 0.96803 1.21133 0.95831 0.89091 0.98104 1.60144 1.06150 1.08168 1.56963 1.21554 0.97546 0.90843 0.96811 1.20920 0.89012 0.84660 0.83057 1.90492 1.36213 1.81145 1.43316 1.41926 1.23652 1.14883 1.40493 1.19635 1.04259 0.96514 1.26177 0.90380 1.26028 0.99737 1.00094 0.95323 1.69663 1.29939 1.28511 1.27858 0.84994 0.77838 0.77124 0.78412 1.19768 1.19431 1.19741 0.89757 0.94153 0.91939 0.87901 0.88295 0.73709 0.80544 0.75118 0.92105 0.90463 0.84911 0.87176 0.92886 0.89277 0.83783 0.91353 0.87498 0.76896 0.91272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.89 71.98 0.71 -1.44 16 2 C -0.05 -0.84 5.94 29.85 0.18 -0.66 16 3 C 0.07 1.34 6.63 25.26 0.17 1.51 16 4 O -0.18 -3.04 10.52 4.48 0.05 -2.99 16 5 C -0.03 -0.37 12.03 66.89 0.80 0.43 16 6 C -0.20 -2.93 10.60 23.65 0.25 -2.68 16 7 C -0.27 -5.52 6.31 -18.99 -0.12 -5.64 16 8 C 0.58 13.71 7.81 86.65 0.68 14.38 16 9 O -0.57 -16.52 14.84 -4.10 -0.06 -16.58 16 10 N -0.71 -13.41 5.55 -470.15 -2.61 -16.02 16 11 C 0.16 2.84 6.11 85.63 0.52 3.37 16 12 C -0.16 -2.66 9.24 25.64 0.24 -2.43 16 13 C -0.12 -2.37 9.38 25.64 0.24 -2.12 16 14 C 0.09 1.80 6.13 85.56 0.52 2.33 16 15 N -0.68 -20.64 6.12 -521.96 -3.19 -23.84 16 16 C 0.06 2.13 6.17 85.56 0.53 2.66 16 17 C 0.44 20.56 7.82 87.66 0.69 21.25 16 18 O -0.63 -34.69 15.78 -3.05 -0.05 -34.74 16 19 N -0.57 -29.14 5.29 -306.98 -1.62 -30.76 16 20 C -0.34 -19.06 9.68 84.04 0.81 -18.25 16 21 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 22 C -0.01 -0.63 5.50 84.92 0.47 -0.17 16 23 N -0.92 -49.14 13.05 21.66 0.28 -48.86 16 24 Si 0.99 42.69 29.55 68.60 2.03 44.72 16 25 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 26 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 27 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 28 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 31 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.10 1.91 6.48 -2.39 -0.02 1.89 16 33 H 0.25 0.74 8.06 -2.91 -0.02 0.72 16 34 H 0.18 1.75 7.74 -2.91 -0.02 1.72 16 35 H 0.41 6.14 7.63 -92.71 -0.71 5.43 16 36 H 0.06 1.27 7.79 -2.39 -0.02 1.25 16 37 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.13 1.76 7.84 -2.91 -0.02 1.73 16 39 H 0.11 2.14 7.84 -2.91 -0.02 2.12 16 40 H 0.05 0.98 8.14 -2.39 -0.02 0.97 16 41 H 0.09 1.65 7.79 -2.39 -0.02 1.63 16 42 H 0.34 11.10 8.42 -89.70 -0.76 10.34 16 43 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 44 H 0.11 3.11 8.14 -2.39 -0.02 3.10 16 45 H 0.40 19.06 7.90 -92.71 -0.73 18.33 16 46 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 Total: -1.00 -74.68 399.36 0.35 -74.33 By element: Atomic # 1 Polarization: 43.36 SS G_CDS: -1.17 Total: 42.19 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: 6.69 Total: 12.54 kcal Atomic # 7 Polarization: -112.33 SS G_CDS: -7.14 Total: -119.47 kcal Atomic # 8 Polarization: -54.25 SS G_CDS: -0.06 Total: -54.31 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Total: -74.68 0.35 -74.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715808020.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.113 kcal (2) G-P(sol) polarization free energy of solvation -74.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds