Wall clock time and date at job start Tue Mar 31 2020 19:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.33645 * 125.80391 * 2 1 4 4 C 1.34217 * 110.91082 * 180.02562 * 3 2 1 5 5 C 1.34176 * 109.12237 * 0.02562 * 4 3 2 6 6 C 1.36420 * 125.79606 * 180.02562 * 2 1 3 7 7 C 1.47377 * 127.19579 * 0.25552 * 6 2 1 8 8 O 1.21613 * 119.99747 * 359.71373 * 7 6 2 9 9 N 1.34771 * 119.99940 * 179.70882 * 7 6 2 10 10 C 1.46504 * 120.00056 * 180.02562 * 9 7 6 11 11 H 1.09006 * 112.84266 * 23.80685 * 10 9 7 12 12 C 1.53778 * 113.61871 * 154.99847 * 10 9 7 13 13 C 1.53776 * 87.07961 * 89.11690 * 12 10 9 14 14 H 1.08998 * 113.61510 * 270.88842 * 13 12 10 15 15 C 1.53005 * 113.61518 * 139.98300 * 13 12 10 16 16 N 1.46895 * 109.47149 * 175.00092 * 15 13 12 17 17 C 1.46900 * 111.00136 * 179.97438 * 16 15 13 18 18 C 1.50694 * 109.47440 * 180.02562 * 17 16 15 19 19 O 1.21297 * 119.99897 * 0.02562 * 18 17 16 20 20 N 1.34776 * 119.99966 * 179.97438 * 18 17 16 21 21 C 1.37106 * 119.99747 * 179.97438 * 20 18 17 22 22 H 1.08001 * 120.00193 * 0.02562 * 21 20 18 23 23 C 1.38953 * 119.99499 * 180.02562 * 21 20 18 24 24 N 1.31418 * 119.99542 * 180.02562 * 23 21 20 25 25 Si 1.86791 * 120.00413 * 359.97438 * 23 21 20 26 26 H 1.48505 * 109.47063 * 90.00440 * 25 23 21 27 27 H 1.48498 * 109.47360 * 210.00603 * 25 23 21 28 28 H 1.48503 * 109.47391 * 330.00776 * 25 23 21 29 29 C 1.53778 * 113.61644 * 252.50351 * 10 9 7 30 30 H 1.09003 * 109.47140 * 270.00049 * 1 2 3 31 31 H 1.09000 * 109.47279 * 29.99573 * 1 2 3 32 32 H 1.09000 * 109.47814 * 149.99729 * 1 2 3 33 33 H 1.07997 * 125.43806 * 179.97438 * 4 3 2 34 34 H 1.07993 * 127.02556 * 180.02562 * 5 4 3 35 35 H 0.96999 * 120.00346 * 359.97438 * 9 7 6 36 36 H 1.08995 * 113.61930 * 203.66964 * 12 10 9 37 37 H 1.09006 * 113.61127 * 334.57176 * 12 10 9 38 38 H 1.09001 * 109.46572 * 294.99898 * 15 13 12 39 39 H 1.08997 * 109.46735 * 55.00116 * 15 13 12 40 40 H 1.00896 * 111.00506 * 303.95502 * 16 15 13 41 41 H 1.09004 * 109.46938 * 300.00219 * 17 16 15 42 42 H 1.09004 * 109.46924 * 59.99809 * 17 16 15 43 43 H 0.96998 * 120.00506 * 0.02562 * 20 18 17 44 44 H 0.96998 * 119.99605 * 179.97438 * 24 23 21 45 45 H 1.08993 * 113.61524 * 25.42471 * 29 10 9 46 46 H 1.08993 * 113.61707 * 156.33625 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2889 1.0839 0.0000 4 6 3.5859 0.7389 -0.0006 5 6 3.6849 -0.5992 -0.0015 6 6 2.3049 -1.1065 -0.0005 7 6 1.8739 -2.5158 -0.0064 8 8 0.6888 -2.7892 -0.0062 9 7 2.7929 -3.5016 -0.0120 10 6 2.3644 -4.9025 -0.0184 11 1 1.3613 -5.0364 -0.4236 12 6 3.4047 -5.8623 -0.6195 13 6 3.9882 -5.9917 0.7974 14 1 4.7509 -5.2471 1.0252 15 6 4.4201 -7.4154 1.1547 16 7 5.0697 -7.4139 2.4722 17 6 5.4981 -8.7674 2.8495 18 6 6.1580 -8.7263 4.2037 19 8 6.2608 -7.6731 4.7965 20 7 6.6329 -9.8600 4.7565 21 6 7.2338 -9.8225 5.9884 22 1 7.3261 -8.8845 6.5159 23 6 7.7239 -10.9912 6.5581 24 7 8.2994 -10.9553 7.7390 25 14 7.5636 -12.6135 5.6461 26 1 8.7609 -12.8219 4.7925 27 1 7.4552 -13.7238 6.6263 28 1 6.3475 -12.5845 4.7944 29 6 2.5905 -5.6220 1.3217 30 1 -0.3633 0.0000 1.0277 31 1 -0.3634 0.8900 -0.5138 32 1 -0.3635 -0.8899 -0.5139 33 1 4.4172 1.4283 -0.0011 34 1 4.5927 -1.1841 -0.0018 35 1 3.7380 -3.2835 -0.0125 36 1 2.9752 -6.7885 -1.0012 37 1 4.0812 -5.3846 -1.3283 38 1 3.5448 -8.0644 1.1819 39 1 5.1209 -7.7814 0.4045 40 1 5.8461 -6.7699 2.4919 41 1 4.6301 -9.4256 2.8885 42 1 6.2063 -9.1434 2.1111 43 1 6.5504 -10.7023 4.2827 44 1 8.6412 -11.7713 8.1369 45 1 2.6097 -4.9506 2.1801 46 1 1.9385 -6.4826 1.4708 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717635263.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:14 Heat of formation + Delta-G solvation = -33.580492 kcal Electronic energy + Delta-G solvation = -27320.364188 eV Core-core repulsion = 23212.454294 eV Total energy + Delta-G solvation = -4107.909893 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.95598 -40.38206 -38.70585 -38.27017 -35.33300 -33.96045 -33.67339 -32.99663 -32.12631 -31.65328 -28.76749 -27.32887 -25.94202 -25.71170 -24.10557 -23.31288 -22.16296 -21.53948 -20.20651 -19.57115 -19.20672 -18.33274 -18.25615 -16.72995 -16.47745 -16.11451 -16.01187 -15.67664 -15.19955 -15.13233 -14.86265 -14.56033 -14.35049 -13.91849 -13.74388 -13.65244 -13.46740 -13.30273 -13.26698 -13.09422 -12.75424 -12.61131 -12.37084 -12.14118 -12.10023 -11.83024 -11.63517 -11.16611 -11.01728 -10.62875 -10.59512 -10.36584 -10.23619 -10.21968 -9.97280 -9.57041 -9.29522 -8.93740 -8.57248 -8.18896 -8.10205 -6.30951 -3.82335 1.00240 1.65223 2.39897 2.90837 3.02776 3.05649 3.06370 3.14867 3.74816 4.02090 4.10461 4.10968 4.28405 4.44237 4.45841 4.49560 4.68947 4.74935 4.86986 4.99132 5.11088 5.15350 5.21642 5.24469 5.30763 5.36411 5.42596 5.47933 5.50802 5.57908 5.66446 5.67524 5.77443 5.82236 5.87375 5.94358 5.98433 6.00512 6.06383 6.41637 6.61754 7.12194 7.24438 7.58289 7.60272 7.96167 8.14897 8.60234 8.95275 9.42781 9.83349 10.82229 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.022091 B = 0.001692 C = 0.001626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.169667 B =16546.312072 C =17213.432035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.080 3.920 3 O -0.177 6.177 4 C -0.037 4.037 5 C -0.188 4.188 6 C -0.249 4.249 7 C 0.594 3.406 8 O -0.542 6.542 9 N -0.704 5.704 10 C 0.117 3.883 11 H 0.103 0.897 12 C -0.140 4.140 13 C -0.105 4.105 14 H 0.089 0.911 15 C 0.069 3.931 16 N -0.667 5.667 17 C 0.048 3.952 18 C 0.450 3.550 19 O -0.565 6.565 20 N -0.591 5.591 21 C -0.305 4.305 22 H 0.119 0.881 23 C 0.041 3.959 24 N -0.882 5.882 25 Si 0.880 3.120 26 H -0.271 1.271 27 H -0.276 1.276 28 H -0.269 1.269 29 C -0.134 4.134 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.109 0.891 33 H 0.209 0.791 34 H 0.157 0.843 35 H 0.401 0.599 36 H 0.096 0.904 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.027 0.973 40 H 0.349 0.651 41 H 0.086 0.914 42 H 0.043 0.957 43 H 0.370 0.630 44 H 0.273 0.727 45 H 0.073 0.927 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.632 17.544 -22.917 31.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.027 3.973 3 O -0.073 6.073 4 C -0.103 4.103 5 C -0.208 4.208 6 C -0.254 4.254 7 C 0.383 3.617 8 O -0.421 6.421 9 N -0.354 5.354 10 C 0.012 3.988 11 H 0.121 0.879 12 C -0.179 4.179 13 C -0.124 4.124 14 H 0.108 0.892 15 C -0.060 4.060 16 N -0.300 5.300 17 C -0.085 4.085 18 C 0.236 3.764 19 O -0.446 6.446 20 N -0.231 5.231 21 C -0.434 4.434 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.522 5.522 25 Si 0.707 3.293 26 H -0.197 1.197 27 H -0.202 1.202 28 H -0.195 1.195 29 C -0.173 4.173 30 H 0.108 0.892 31 H 0.096 0.904 32 H 0.128 0.872 33 H 0.225 0.775 34 H 0.175 0.825 35 H 0.236 0.764 36 H 0.114 0.886 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.045 0.955 40 H 0.168 0.832 41 H 0.105 0.895 42 H 0.061 0.939 43 H 0.203 0.797 44 H 0.084 0.916 45 H 0.092 0.908 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -12.982 18.190 -21.977 31.343 hybrid contribution 1.677 -1.660 -1.028 2.574 sum -11.306 16.529 -23.005 30.500 Atomic orbital electron populations 1.20636 0.83674 1.05083 1.04598 1.22857 0.94187 0.83102 0.97126 1.83781 1.17225 1.34981 1.71265 1.23883 0.83502 0.96447 1.06470 1.22879 0.96610 0.94636 1.06626 1.21132 0.93411 0.93796 1.17033 1.17157 0.85416 0.83685 0.75442 1.90755 1.16573 1.84027 1.50722 1.45431 1.09588 1.05288 1.75070 1.21906 0.99254 0.79618 0.98041 0.87944 1.23363 0.98081 0.99689 0.96776 1.22564 0.97435 0.97302 0.95102 0.89234 1.21972 0.98683 0.96013 0.89376 1.60033 1.35018 1.07537 1.27400 1.21704 0.99318 0.91679 0.95782 1.19736 0.84051 0.84775 0.87886 1.90565 1.60234 1.29968 1.63876 1.42213 1.54074 1.07759 1.19033 1.19438 1.32991 0.98088 0.92850 0.86302 1.25045 0.97116 0.98036 0.96021 1.69627 1.38375 1.28890 1.15278 0.86661 0.78639 0.84017 0.80005 1.19691 1.20163 1.19473 1.23379 0.96421 1.00479 0.97025 0.89159 0.90364 0.87246 0.77468 0.82509 0.76440 0.88556 0.91024 0.90902 0.95498 0.83170 0.89546 0.93884 0.79701 0.91629 0.90819 0.88988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.60 9.89 36.01 0.36 -0.25 16 2 C 0.08 0.74 7.37 -34.96 -0.26 0.48 16 3 O -0.18 -1.49 10.52 7.67 0.08 -1.41 16 4 C -0.04 -0.24 12.03 29.30 0.35 0.11 16 5 C -0.19 -1.37 10.60 -37.45 -0.40 -1.77 16 6 C -0.25 -2.43 6.31 -103.27 -0.65 -3.08 16 7 C 0.59 6.59 7.81 -12.54 -0.10 6.50 16 8 O -0.54 -7.41 14.44 5.27 0.08 -7.33 16 9 N -0.70 -6.30 5.26 -54.10 -0.28 -6.58 16 10 C 0.12 1.06 4.32 -67.12 -0.29 0.76 16 11 H 0.10 1.03 7.46 -51.93 -0.39 0.64 16 12 C -0.14 -1.02 7.39 -25.92 -0.19 -1.21 16 13 C -0.11 -0.97 3.78 -89.80 -0.34 -1.31 16 14 H 0.09 0.84 8.13 -51.93 -0.42 0.41 16 15 C 0.07 0.75 5.52 -3.82 -0.02 0.73 16 16 N -0.67 -10.11 6.12 -115.06 -0.70 -10.81 16 17 C 0.05 0.79 6.17 -4.98 -0.03 0.76 16 18 C 0.45 10.26 7.82 -10.99 -0.09 10.17 16 19 O -0.56 -15.27 15.78 5.54 0.09 -15.18 16 20 N -0.59 -14.15 5.09 -10.96 -0.06 -14.21 16 21 C -0.30 -8.68 10.16 -14.93 -0.15 -8.83 16 22 H 0.12 3.87 7.39 -52.49 -0.39 3.48 16 23 C 0.04 1.12 5.50 -17.46 -0.10 1.02 16 24 N -0.88 -25.85 13.96 55.50 0.77 -25.08 16 25 Si 0.88 19.39 27.73 -169.99 -4.71 14.68 16 26 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 27 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 28 H -0.27 -5.41 6.52 56.52 0.37 -5.04 16 29 C -0.13 -1.37 7.43 -25.92 -0.19 -1.56 16 30 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.11 0.92 6.48 -51.93 -0.34 0.58 16 33 H 0.21 0.53 8.06 -52.49 -0.42 0.10 16 34 H 0.16 0.77 7.74 -52.49 -0.41 0.36 16 35 H 0.40 2.78 7.87 -40.82 -0.32 2.46 16 36 H 0.10 0.62 8.10 -51.93 -0.42 0.20 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.77 7.84 -51.93 -0.41 0.36 16 39 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.35 5.46 8.43 -39.29 -0.33 5.12 16 41 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 42 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.37 7.76 5.76 -40.82 -0.24 7.52 16 44 H 0.27 7.38 8.31 -40.82 -0.34 7.05 16 45 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.09 0.93 7.89 -51.93 -0.41 0.52 16 LS Contribution 388.22 15.07 5.85 5.85 Total: -1.00 -35.75 388.22 -7.60 -43.36 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: -6.62 Total: 14.19 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: -2.10 Total: 2.52 kcal Atomic # 7 Polarization: -56.40 SS G_CDS: -0.27 Total: -56.67 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: 0.24 Total: -23.93 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -4.71 Total: 14.68 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.75 -7.60 -43.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717635263.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.775 kcal (2) G-P(sol) polarization free energy of solvation -35.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds