Wall clock time and date at job start Tue Mar 31 2020 19:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.33645 * 125.80391 * 2 1 4 4 C 1.34217 * 110.91082 * 180.02562 * 3 2 1 5 5 C 1.34176 * 109.12237 * 0.02562 * 4 3 2 6 6 C 1.36420 * 125.79606 * 180.02562 * 2 1 3 7 7 C 1.47377 * 127.19579 * 0.25552 * 6 2 1 8 8 O 1.21613 * 119.99747 * 359.71373 * 7 6 2 9 9 N 1.34771 * 119.99940 * 179.70882 * 7 6 2 10 10 C 1.46504 * 120.00056 * 180.02562 * 9 7 6 11 11 H 1.09006 * 112.84266 * 23.80685 * 10 9 7 12 12 C 1.53778 * 113.61871 * 154.99847 * 10 9 7 13 13 C 1.53776 * 87.07961 * 89.11690 * 12 10 9 14 14 H 1.08998 * 113.61510 * 270.88842 * 13 12 10 15 15 C 1.53005 * 113.61518 * 139.98300 * 13 12 10 16 16 N 1.46895 * 109.47149 * 175.00092 * 15 13 12 17 17 C 1.46900 * 111.00136 * 179.97438 * 16 15 13 18 18 C 1.50694 * 109.47440 * 180.02562 * 17 16 15 19 19 O 1.21297 * 119.99897 * 0.02562 * 18 17 16 20 20 N 1.34776 * 119.99966 * 179.97438 * 18 17 16 21 21 C 1.37106 * 119.99747 * 179.97438 * 20 18 17 22 22 H 1.08001 * 120.00193 * 0.02562 * 21 20 18 23 23 C 1.38953 * 119.99499 * 180.02562 * 21 20 18 24 24 N 1.31418 * 119.99542 * 180.02562 * 23 21 20 25 25 Si 1.86791 * 120.00413 * 359.97438 * 23 21 20 26 26 H 1.48505 * 109.47063 * 90.00440 * 25 23 21 27 27 H 1.48498 * 109.47360 * 210.00603 * 25 23 21 28 28 H 1.48503 * 109.47391 * 330.00776 * 25 23 21 29 29 C 1.53778 * 113.61644 * 252.50351 * 10 9 7 30 30 H 1.09003 * 109.47140 * 270.00049 * 1 2 3 31 31 H 1.09000 * 109.47279 * 29.99573 * 1 2 3 32 32 H 1.09000 * 109.47814 * 149.99729 * 1 2 3 33 33 H 1.07997 * 125.43806 * 179.97438 * 4 3 2 34 34 H 1.07993 * 127.02556 * 180.02562 * 5 4 3 35 35 H 0.96999 * 120.00346 * 359.97438 * 9 7 6 36 36 H 1.08995 * 113.61930 * 203.66964 * 12 10 9 37 37 H 1.09006 * 113.61127 * 334.57176 * 12 10 9 38 38 H 1.09001 * 109.46572 * 294.99898 * 15 13 12 39 39 H 1.08997 * 109.46735 * 55.00116 * 15 13 12 40 40 H 1.00896 * 111.00506 * 303.95502 * 16 15 13 41 41 H 1.09004 * 109.46938 * 300.00219 * 17 16 15 42 42 H 1.09004 * 109.46924 * 59.99809 * 17 16 15 43 43 H 0.96998 * 120.00506 * 0.02562 * 20 18 17 44 44 H 0.96998 * 119.99605 * 179.97438 * 24 23 21 45 45 H 1.08993 * 113.61524 * 25.42471 * 29 10 9 46 46 H 1.08993 * 113.61707 * 156.33625 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2889 1.0839 0.0000 4 6 3.5859 0.7389 -0.0006 5 6 3.6849 -0.5992 -0.0015 6 6 2.3049 -1.1065 -0.0005 7 6 1.8739 -2.5158 -0.0064 8 8 0.6888 -2.7892 -0.0062 9 7 2.7929 -3.5016 -0.0120 10 6 2.3644 -4.9025 -0.0184 11 1 1.3613 -5.0364 -0.4236 12 6 3.4047 -5.8623 -0.6195 13 6 3.9882 -5.9917 0.7974 14 1 4.7509 -5.2471 1.0252 15 6 4.4201 -7.4154 1.1547 16 7 5.0697 -7.4139 2.4722 17 6 5.4981 -8.7674 2.8495 18 6 6.1580 -8.7263 4.2037 19 8 6.2608 -7.6731 4.7965 20 7 6.6329 -9.8600 4.7565 21 6 7.2338 -9.8225 5.9884 22 1 7.3261 -8.8845 6.5159 23 6 7.7239 -10.9912 6.5581 24 7 8.2994 -10.9553 7.7390 25 14 7.5636 -12.6135 5.6461 26 1 8.7609 -12.8219 4.7925 27 1 7.4552 -13.7238 6.6263 28 1 6.3475 -12.5845 4.7944 29 6 2.5905 -5.6220 1.3217 30 1 -0.3633 0.0000 1.0277 31 1 -0.3634 0.8900 -0.5138 32 1 -0.3635 -0.8899 -0.5139 33 1 4.4172 1.4283 -0.0011 34 1 4.5927 -1.1841 -0.0018 35 1 3.7380 -3.2835 -0.0125 36 1 2.9752 -6.7885 -1.0012 37 1 4.0812 -5.3846 -1.3283 38 1 3.5448 -8.0644 1.1819 39 1 5.1209 -7.7814 0.4045 40 1 5.8461 -6.7699 2.4919 41 1 4.6301 -9.4256 2.8885 42 1 6.2063 -9.1434 2.1111 43 1 6.5504 -10.7023 4.2827 44 1 8.6412 -11.7713 8.1369 45 1 2.6097 -4.9506 2.1801 46 1 1.9385 -6.4826 1.4708 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717635263.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:13 Heat of formation + Delta-G solvation = -61.963970 kcal Electronic energy + Delta-G solvation = -27321.594988 eV Core-core repulsion = 23212.454294 eV Total energy + Delta-G solvation = -4109.140693 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.55413 -41.16645 -40.28369 -39.35003 -36.57236 -35.82054 -34.52391 -33.77518 -33.66909 -32.71203 -29.93302 -28.03756 -27.21455 -26.58117 -25.35714 -24.35007 -22.98197 -22.19964 -21.31123 -20.90879 -20.41956 -19.91329 -18.93089 -17.82456 -17.35526 -17.17523 -16.98953 -16.76493 -16.63089 -16.05109 -15.90248 -15.66191 -15.31117 -15.23871 -15.02837 -14.66693 -14.46824 -14.30944 -14.11782 -13.95915 -13.85816 -13.77018 -13.45857 -13.28345 -13.06656 -12.91781 -12.69705 -12.56979 -12.41544 -11.98467 -11.80658 -11.51384 -11.40488 -11.14325 -11.09016 -10.86341 -10.42276 -10.25087 -10.05927 -9.53934 -9.23776 -8.41520 -6.02611 0.29967 1.10916 1.30662 1.35717 1.45096 1.81948 1.96003 2.21478 2.23236 2.28462 2.74582 3.15047 3.38146 3.58130 3.59997 3.77033 3.82351 3.87573 3.92849 4.03830 4.17903 4.34532 4.43704 4.51892 4.54866 4.59766 4.61071 4.66473 4.72966 4.76544 4.83329 4.87868 4.91037 4.95175 5.14770 5.19476 5.23345 5.30160 5.37095 5.52768 5.67380 5.91492 6.02161 6.10243 6.44835 6.51996 6.59993 6.87955 7.18175 7.39798 7.96733 8.76199 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.022091 B = 0.001692 C = 0.001626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.169667 B =16546.312072 C =17213.432035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.066 3.934 3 O -0.183 6.183 4 C -0.032 4.032 5 C -0.198 4.198 6 C -0.274 4.274 7 C 0.588 3.412 8 O -0.577 6.577 9 N -0.694 5.694 10 C 0.115 3.885 11 H 0.091 0.909 12 C -0.118 4.118 13 C -0.101 4.101 14 H 0.088 0.912 15 C 0.071 3.929 16 N -0.689 5.689 17 C 0.063 3.937 18 C 0.447 3.553 19 O -0.616 6.616 20 N -0.591 5.591 21 C -0.330 4.330 22 H 0.054 0.946 23 C -0.016 4.016 24 N -0.935 5.935 25 Si 0.967 3.033 26 H -0.256 1.256 27 H -0.276 1.276 28 H -0.231 1.231 29 C -0.141 4.141 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.094 0.906 33 H 0.247 0.753 34 H 0.179 0.821 35 H 0.411 0.589 36 H 0.112 0.888 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.048 0.952 40 H 0.343 0.657 41 H 0.111 0.889 42 H 0.078 0.922 43 H 0.390 0.610 44 H 0.279 0.721 45 H 0.046 0.954 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.488 16.047 -26.336 32.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.013 3.987 3 O -0.080 6.080 4 C -0.097 4.097 5 C -0.217 4.217 6 C -0.278 4.278 7 C 0.377 3.623 8 O -0.459 6.459 9 N -0.344 5.344 10 C 0.010 3.990 11 H 0.109 0.891 12 C -0.156 4.156 13 C -0.120 4.120 14 H 0.106 0.894 15 C -0.057 4.057 16 N -0.322 5.322 17 C -0.070 4.070 18 C 0.235 3.765 19 O -0.500 6.500 20 N -0.233 5.233 21 C -0.459 4.459 22 H 0.072 0.928 23 C -0.215 4.215 24 N -0.575 5.575 25 Si 0.787 3.213 26 H -0.180 1.180 27 H -0.201 1.201 28 H -0.154 1.154 29 C -0.179 4.179 30 H 0.111 0.889 31 H 0.117 0.883 32 H 0.113 0.887 33 H 0.263 0.737 34 H 0.196 0.804 35 H 0.248 0.752 36 H 0.131 0.869 37 H 0.106 0.894 38 H 0.099 0.901 39 H 0.066 0.934 40 H 0.161 0.839 41 H 0.129 0.871 42 H 0.096 0.904 43 H 0.226 0.774 44 H 0.089 0.911 45 H 0.064 0.936 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -12.831 16.696 -25.432 33.018 hybrid contribution 1.646 -1.028 0.117 1.944 sum -11.185 15.668 -25.315 31.803 Atomic orbital electron populations 1.20628 0.82984 1.05345 1.04835 1.23166 0.94990 0.83334 0.97209 1.83793 1.18137 1.34791 1.71231 1.24688 0.83429 0.97003 1.04554 1.23173 0.96211 0.95291 1.07044 1.21281 0.95111 0.93240 1.18209 1.17464 0.85208 0.84622 0.74983 1.90727 1.17973 1.84645 1.52537 1.45378 1.09913 1.05052 1.74106 1.21907 0.99618 0.79895 0.97602 0.89091 1.23274 0.96980 0.99664 0.95693 1.22528 0.96490 0.96598 0.96401 0.89393 1.22063 0.98942 0.97007 0.87666 1.60045 1.35000 1.06755 1.30399 1.21624 1.00346 0.93166 0.91840 1.21079 0.82279 0.83448 0.89714 1.90543 1.61693 1.31926 1.65880 1.42040 1.54270 1.09229 1.17745 1.19015 1.35514 0.96383 0.95016 0.92804 1.26149 0.95612 1.02899 0.96834 1.69813 1.39385 1.30722 1.17621 0.85338 0.80667 0.76447 0.78895 1.18003 1.20084 1.15436 1.23411 0.97673 1.00264 0.96592 0.88894 0.88261 0.88742 0.73702 0.80385 0.75192 0.86921 0.89363 0.90110 0.93374 0.83870 0.87090 0.90381 0.77429 0.91147 0.93551 0.88895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.22 9.89 71.24 0.70 -0.52 16 2 C 0.07 1.22 7.37 25.26 0.19 1.41 16 3 O -0.18 -2.94 10.52 4.52 0.05 -2.89 16 4 C -0.03 -0.35 12.03 66.89 0.80 0.45 16 5 C -0.20 -2.63 10.60 23.65 0.25 -2.38 16 6 C -0.27 -5.36 6.31 -18.99 -0.12 -5.48 16 7 C 0.59 13.35 7.81 86.65 0.68 14.03 16 8 O -0.58 -16.55 14.44 -4.07 -0.06 -16.61 16 9 N -0.69 -12.12 5.26 -443.34 -2.33 -14.45 16 10 C 0.12 1.98 4.32 45.51 0.20 2.17 16 11 H 0.09 1.81 7.46 -2.38 -0.02 1.79 16 12 C -0.12 -1.36 7.39 31.12 0.23 -1.13 16 13 C -0.10 -1.65 3.78 -10.27 -0.04 -1.69 16 14 H 0.09 1.49 8.13 -2.39 -0.02 1.47 16 15 C 0.07 1.32 5.52 86.31 0.48 1.80 16 16 N -0.69 -19.46 6.12 -517.94 -3.17 -22.64 16 17 C 0.06 1.86 6.17 85.56 0.53 2.39 16 18 C 0.45 20.19 7.82 87.66 0.69 20.88 16 19 O -0.62 -34.46 15.78 -3.08 -0.05 -34.50 16 20 N -0.59 -27.90 5.09 -306.98 -1.56 -29.46 16 21 C -0.33 -19.47 10.16 84.04 0.85 -18.61 16 22 H 0.05 3.79 7.39 -2.91 -0.02 3.77 16 23 C -0.02 -0.92 5.50 84.93 0.47 -0.45 16 24 N -0.93 -56.59 13.96 21.66 0.30 -56.29 16 25 Si 0.97 38.64 27.73 68.60 1.90 40.54 16 26 H -0.26 -9.60 7.11 99.48 0.71 -8.90 16 27 H -0.28 -10.98 7.11 99.48 0.71 -10.27 16 28 H -0.23 -7.75 6.52 99.48 0.65 -7.11 16 29 C -0.14 -2.80 7.43 31.12 0.23 -2.57 16 30 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.09 1.71 6.48 -2.39 -0.02 1.69 16 33 H 0.25 0.47 8.06 -2.91 -0.02 0.44 16 34 H 0.18 1.40 7.74 -2.91 -0.02 1.37 16 35 H 0.41 5.25 7.87 -92.71 -0.73 4.52 16 36 H 0.11 1.01 8.10 -2.39 -0.02 0.99 16 37 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 38 H 0.08 1.40 7.84 -2.39 -0.02 1.38 16 39 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.34 10.33 8.43 -89.70 -0.76 9.58 16 41 H 0.11 2.83 8.14 -2.38 -0.02 2.81 16 42 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 43 H 0.39 15.11 5.76 -92.71 -0.53 14.58 16 44 H 0.28 15.41 8.31 -92.71 -0.77 14.64 16 45 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 46 H 0.09 1.81 7.89 -2.39 -0.02 1.79 16 Total: -1.00 -84.95 388.22 0.17 -84.78 By element: Atomic # 1 Polarization: 42.26 SS G_CDS: -1.04 Total: 41.22 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: 6.13 Total: 10.30 kcal Atomic # 7 Polarization: -116.08 SS G_CDS: -6.76 Total: -122.84 kcal Atomic # 8 Polarization: -53.94 SS G_CDS: -0.06 Total: -54.00 kcal Atomic # 14 Polarization: 38.64 SS G_CDS: 1.90 Total: 40.54 kcal Total: -84.95 0.17 -84.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717635263.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.814 kcal (2) G-P(sol) polarization free energy of solvation -84.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds