Wall clock time and date at job start Tue Mar 31 2020 19:56:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 C 1.34507 * 125.78834 * 2 1
4 4 C 1.41386 * 106.84010 * 180.26118 * 3 2 1
5 5 C 1.34511 * 106.84141 * 0.02562 * 4 3 2
6 6 C 1.50698 * 125.79252 * 179.97438 * 5 4 3
7 7 C 1.50702 * 109.46835 * 90.00249 * 6 5 4
8 8 O 1.21287 * 119.99885 * 359.97438 * 7 6 5
9 9 N 1.34777 * 120.00273 * 180.02562 * 7 6 5
10 10 C 1.46497 * 119.99963 * 179.97438 * 9 7 6
11 11 H 1.09000 * 112.85461 * 336.19577 * 10 9 7
12 12 C 1.53779 * 113.61143 * 107.50691 * 10 9 7
13 13 C 1.53783 * 87.08352 * 139.97858 * 12 10 9
14 14 H 1.08997 * 113.61593 * 89.11037 * 13 12 10
15 15 N 1.46894 * 113.69075 * 220.00661 * 13 12 10
16 16 C 1.46900 * 111.00278 * 252.53083 * 15 13 12
17 17 C 1.50697 * 109.47503 * 179.97438 * 16 15 13
18 18 O 1.21292 * 119.99721 * 0.02562 * 17 16 15
19 19 N 1.34779 * 119.99962 * 180.02562 * 17 16 15
20 20 C 1.37101 * 119.99829 * 180.02562 * 19 17 16
21 21 H 1.07997 * 120.00200 * 359.97438 * 20 19 17
22 22 C 1.38944 * 119.99851 * 180.02562 * 20 19 17
23 23 N 1.31411 * 120.00160 * 0.02562 * 22 20 19
24 24 Si 1.86801 * 120.00032 * 179.97438 * 22 20 19
25 25 H 1.48499 * 109.46926 * 60.00174 * 24 22 20
26 26 H 1.48500 * 109.47350 * 179.97438 * 24 22 20
27 27 H 1.48497 * 109.47217 * 300.00312 * 24 22 20
28 28 C 1.53778 * 87.07764 * 334.56739 * 13 12 10
29 29 O 1.34304 * 125.78797 * 180.31178 * 2 1 3
30 30 H 1.08998 * 109.47395 * 179.71425 * 1 2 3
31 31 H 1.09004 * 109.47316 * 299.71258 * 1 2 3
32 32 H 1.08995 * 109.47160 * 59.71311 * 1 2 3
33 33 H 1.08004 * 126.58507 * 0.26980 * 3 2 1
34 34 H 1.08000 * 126.57862 * 179.97438 * 4 3 2
35 35 H 1.08995 * 109.47617 * 209.99888 * 6 5 4
36 36 H 1.09004 * 109.47047 * 330.00557 * 6 5 4
37 37 H 0.96995 * 119.99633 * 0.02562 * 9 7 6
38 38 H 1.09003 * 113.61691 * 254.52691 * 12 10 9
39 39 H 1.09001 * 113.61645 * 25.43086 * 12 10 9
40 40 H 1.00899 * 111.00308 * 16.49134 * 15 13 12
41 41 H 1.09005 * 109.47176 * 300.00775 * 16 15 13
42 42 H 1.09005 * 109.47076 * 60.00018 * 16 15 13
43 43 H 0.97000 * 119.99828 * 0.02562 * 19 17 16
44 44 H 0.97001 * 120.00174 * 180.02562 * 23 22 20
45 45 H 1.09001 * 113.61360 * 270.88350 * 28 13 12
46 46 H 1.09000 * 113.69296 * 139.99687 * 28 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2936 1.0911 0.0000
4 6 3.6309 0.6320 -0.0062
5 6 3.5814 -0.7122 -0.0101
6 6 4.7705 -1.6379 -0.0178
7 6 5.1725 -1.9509 1.4005
8 8 4.5545 -1.4692 2.3263
9 7 6.2194 -2.7652 1.6402
10 6 6.6104 -3.0689 3.0190
11 1 6.2897 -2.3056 3.7279
12 6 6.2646 -4.5023 3.4557
13 6 7.6225 -4.5261 4.1771
14 1 7.5781 -4.1622 5.2036
15 7 8.3328 -5.8062 4.0559
16 6 8.3112 -6.5427 5.3268
17 6 9.0472 -7.8476 5.1638
18 8 9.5415 -8.1355 4.0943
19 7 9.1561 -8.6946 6.2065
20 6 9.8261 -9.8815 6.0584
21 1 10.2663 -10.1380 5.1061
22 6 9.9379 -10.7550 7.1332
23 7 9.4010 -10.4437 8.2915
24 14 10.8502 -12.3725 6.9312
25 1 12.2572 -12.1018 6.5410
26 1 10.8278 -13.1173 8.2158
27 1 10.1914 -13.1840 5.8764
28 6 8.0890 -3.4647 3.1669
29 8 2.2924 -1.0894 -0.0059
30 1 -0.3634 -1.0276 -0.0051
31 1 -0.3634 0.5094 0.8926
32 1 -0.3633 0.5183 -0.8874
33 1 1.9666 2.1204 0.0041
34 1 4.5212 1.2433 -0.0082
35 1 4.5086 -2.5617 -0.5334
36 1 5.6019 -1.1571 -0.5334
37 1 6.7143 -3.1495 0.8998
38 1 5.4106 -4.5591 4.1307
39 1 6.1980 -5.2072 2.6270
40 1 7.9481 -6.3639 3.3082
41 1 8.7949 -5.9464 6.1005
42 1 7.2787 -6.7417 5.6139
43 1 8.7604 -8.4644 7.0617
44 1 9.4794 -11.0533 9.0419
45 1 8.5212 -3.8859 2.2592
46 1 8.7083 -2.6832 3.6073
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001731474068.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:56:30
Heat of formation + Delta-G solvation = -39.247896 kcal
Electronic energy + Delta-G solvation = -26986.117269 eV
Core-core repulsion = 22877.961618 eV
Total energy + Delta-G solvation = -4108.155651 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.168 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-42.86874 -40.35010 -38.82938 -37.96232 -34.65011 -33.87976 -33.48250 -33.36301
-32.46734 -31.19749 -30.23251 -26.90803 -25.80609 -25.60947 -24.28808 -22.86727
-22.04599 -20.96380 -20.47326 -20.03311 -19.14932 -17.88867 -17.54174 -17.16984
-16.48027 -16.19990 -15.87985 -15.59878 -15.46562 -14.88561 -14.60725 -14.44885
-14.23849 -13.97334 -13.72223 -13.37045 -13.36042 -13.21815 -13.08054 -13.07476
-12.88039 -12.59489 -12.46051 -12.13515 -11.95640 -11.65807 -11.55947 -11.27219
-11.05262 -10.99536 -10.85092 -10.44521 -10.22194 -10.19898 -10.07526 -9.50496
-9.27381 -8.55272 -8.45794 -8.03630 -7.95746 -6.41865 -3.82918 1.38383
2.28984 2.29824 2.54063 3.01800 3.19896 3.25700 3.30016 3.90467
4.10263 4.14586 4.28940 4.38916 4.49306 4.52408 4.62291 4.72823
4.74313 4.77439 4.86550 4.89036 5.05512 5.06877 5.17835 5.26986
5.31845 5.42336 5.53911 5.60245 5.64341 5.67907 5.77592 5.81098
5.86294 5.89712 5.94835 6.01221 6.25694 6.26343 6.35636 6.89263
7.18079 7.24521 7.54638 7.63896 7.91486 8.05709 8.60843 9.17335
9.53923 10.05273 10.75719
Molecular weight = 335.17amu
Principal moments of inertia in cm(-1)
A = 0.031522 B = 0.001469 C = 0.001448
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 888.051951 B =19053.576093 C =19336.267714
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.074 4.074
2 C -0.011 4.011
3 C -0.213 4.213
4 C -0.191 4.191
5 C 0.002 3.998
6 C -0.062 4.062
7 C 0.513 3.487
8 O -0.529 6.529
9 N -0.716 5.716
10 C 0.122 3.878
11 H 0.115 0.885
12 C -0.181 4.181
13 C 0.071 3.929
14 H 0.100 0.900
15 N -0.654 5.654
16 C 0.049 3.951
17 C 0.440 3.560
18 O -0.585 6.585
19 N -0.563 5.563
20 C -0.301 4.301
21 H 0.102 0.898
22 C 0.023 3.977
23 N -0.902 5.902
24 Si 0.931 3.069
25 H -0.273 1.273
26 H -0.284 1.284
27 H -0.274 1.274
28 C -0.132 4.132
29 O -0.171 6.171
30 H 0.075 0.925
31 H 0.085 0.915
32 H 0.084 0.916
33 H 0.147 0.853
34 H 0.146 0.854
35 H 0.112 0.888
36 H 0.124 0.876
37 H 0.403 0.597
38 H 0.070 0.930
39 H 0.087 0.913
40 H 0.351 0.649
41 H 0.086 0.914
42 H 0.045 0.955
43 H 0.392 0.608
44 H 0.272 0.728
45 H 0.092 0.908
46 H 0.075 0.925
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.886 22.315 -15.652 30.590
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.130 4.130
2 C -0.061 4.061
3 C -0.232 4.232
4 C -0.211 4.211
5 C -0.048 4.048
6 C -0.101 4.101
7 C 0.299 3.701
8 O -0.405 6.405
9 N -0.368 5.368
10 C 0.017 3.983
11 H 0.132 0.868
12 C -0.222 4.222
13 C -0.041 4.041
14 H 0.118 0.882
15 N -0.285 5.285
16 C -0.083 4.083
17 C 0.225 3.775
18 O -0.469 6.469
19 N -0.200 5.200
20 C -0.431 4.431
21 H 0.120 0.880
22 C -0.179 4.179
23 N -0.543 5.543
24 Si 0.758 3.242
25 H -0.199 1.199
26 H -0.210 1.210
27 H -0.199 1.199
28 C -0.171 4.171
29 O -0.067 6.067
30 H 0.094 0.906
31 H 0.104 0.896
32 H 0.103 0.897
33 H 0.165 0.835
34 H 0.164 0.836
35 H 0.130 0.870
36 H 0.142 0.858
37 H 0.238 0.762
38 H 0.089 0.911
39 H 0.106 0.894
40 H 0.172 0.828
41 H 0.105 0.895
42 H 0.063 0.937
43 H 0.226 0.774
44 H 0.082 0.918
45 H 0.110 0.890
46 H 0.094 0.906
Dipole moment (debyes) X Y Z Total
from point charges -13.474 22.308 -15.382 30.262
hybrid contribution -0.374 -0.991 0.277 1.095
sum -13.848 21.317 -15.106 29.570
Atomic orbital electron populations
1.20311 0.85136 1.04064 1.03532 1.22417 0.93970 0.84093 1.05642
1.21512 0.92650 0.99388 1.09648 1.21487 0.98269 0.93627 1.07674
1.21375 0.82655 0.93800 1.06996 1.20101 0.93794 1.00313 0.95930
1.20441 0.80253 0.78526 0.90918 1.90753 1.52659 1.51349 1.45724
1.45951 1.32461 1.49327 1.09016 1.22433 0.95976 0.96643 0.83277
0.86752 1.24242 0.99499 0.97301 1.01167 1.22809 0.91061 0.91577
0.98628 0.88241 1.60011 1.57649 1.04604 1.06273 1.21726 0.98909
0.95035 0.92659 1.19827 0.86106 0.85950 0.85589 1.90516 1.52233
1.76990 1.27202 1.41862 1.49097 1.17415 1.11578 1.19658 1.30497
0.94114 0.98795 0.87974 1.25260 0.97871 0.99949 0.94800 1.69604
1.44941 1.38061 1.01667 0.85913 0.79855 0.81071 0.77346 1.19878
1.20971 1.19932 1.23470 0.94548 0.98378 1.00729 1.83933 1.16191
1.35174 1.71437 0.90587 0.89626 0.89702 0.83528 0.83597 0.86966
0.85768 0.76243 0.91073 0.89404 0.82829 0.89533 0.93746 0.77439
0.91810 0.88954 0.90581
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.42 10.42 36.01 0.38 -0.04 16
2 C -0.01 -0.11 7.32 -35.63 -0.26 -0.37 16
3 C -0.21 -1.98 10.81 -39.70 -0.43 -2.40 16
4 C -0.19 -1.85 10.81 -39.70 -0.43 -2.28 16
5 C 0.00 0.02 5.81 -35.63 -0.21 -0.19 16
6 C -0.06 -0.42 6.23 -29.03 -0.18 -0.61 16
7 C 0.51 5.11 7.82 -10.98 -0.09 5.02 16
8 O -0.53 -7.77 15.63 5.55 0.09 -7.69 16
9 N -0.72 -5.72 5.35 -53.02 -0.28 -6.01 16
10 C 0.12 1.16 4.24 -67.12 -0.28 0.88 16
11 H 0.11 1.25 7.46 -51.93 -0.39 0.86 16
12 C -0.18 -1.90 7.50 -25.92 -0.19 -2.09 16
13 C 0.07 0.82 4.18 -66.90 -0.28 0.54 16
14 H 0.10 1.10 7.87 -51.93 -0.41 0.69 16
15 N -0.65 -10.08 6.24 -107.13 -0.67 -10.74 16
16 C 0.05 0.85 6.01 -4.98 -0.03 0.82 16
17 C 0.44 10.33 7.82 -10.99 -0.09 10.24 16
18 O -0.59 -15.77 15.78 5.55 0.09 -15.69 16
19 N -0.56 -14.26 5.29 -10.97 -0.06 -14.32 16
20 C -0.30 -8.41 9.68 -14.93 -0.14 -8.55 16
21 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16
22 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16
23 N -0.90 -24.52 13.05 55.50 0.72 -23.80 16
24 Si 0.93 21.03 29.55 -169.99 -5.02 16.00 16
25 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16
26 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16
27 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16
28 C -0.13 -1.26 7.63 -25.92 -0.20 -1.46 16
29 O -0.17 -1.96 10.65 5.70 0.06 -1.90 16
30 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16
31 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16
32 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16
33 H 0.15 1.02 8.06 -52.48 -0.42 0.59 16
34 H 0.15 1.13 8.06 -52.49 -0.42 0.70 16
35 H 0.11 0.56 8.14 -51.93 -0.42 0.13 16
36 H 0.12 0.45 8.14 -51.93 -0.42 0.03 16
37 H 0.40 2.09 8.73 -40.82 -0.36 1.73 16
38 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16
39 H 0.09 0.91 7.83 -51.93 -0.41 0.50 16
40 H 0.35 5.57 7.90 -39.29 -0.31 5.26 16
41 H 0.09 1.39 8.13 -51.93 -0.42 0.97 16
42 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16
43 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16
44 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16
45 H 0.09 0.87 8.12 -51.93 -0.42 0.45 16
46 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16
LS Contribution 395.31 15.07 5.96 5.96
Total: -1.00 -35.91 395.31 -8.42 -44.33
By element:
Atomic # 1 Polarization: 20.59 SS G_CDS: -6.77 Total: 13.81 kcal
Atomic # 6 Polarization: 2.56 SS G_CDS: -2.53 Total: 0.03 kcal
Atomic # 7 Polarization: -54.58 SS G_CDS: -0.29 Total: -54.87 kcal
Atomic # 8 Polarization: -25.50 SS G_CDS: 0.24 Total: -25.27 kcal
Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal
Total LS contribution 5.96 Total: 5.96 kcal
Total: -35.91 -8.42 -44.33 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001731474068.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 5.084 kcal
(2) G-P(sol) polarization free energy of solvation -35.909 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.825 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.423 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.332 kcal
(6) G-S(sol) free energy of system = (1) + (5) -39.248 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds