Wall clock time and date at job start Tue Mar 31 2020 19:56:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 C 1.34507 * 125.78834 * 2 1
4 4 C 1.41386 * 106.84010 * 180.26118 * 3 2 1
5 5 C 1.34511 * 106.84141 * 0.02562 * 4 3 2
6 6 C 1.50698 * 125.79252 * 179.97438 * 5 4 3
7 7 C 1.50702 * 109.46835 * 90.00249 * 6 5 4
8 8 O 1.21287 * 119.99885 * 359.97438 * 7 6 5
9 9 N 1.34777 * 120.00273 * 180.02562 * 7 6 5
10 10 C 1.46497 * 119.99963 * 179.97438 * 9 7 6
11 11 H 1.09000 * 112.85461 * 336.19577 * 10 9 7
12 12 C 1.53779 * 113.61143 * 107.50691 * 10 9 7
13 13 C 1.53783 * 87.08352 * 139.97858 * 12 10 9
14 14 H 1.08997 * 113.61593 * 89.11037 * 13 12 10
15 15 N 1.46894 * 113.69075 * 220.00661 * 13 12 10
16 16 C 1.46900 * 111.00278 * 252.53083 * 15 13 12
17 17 C 1.50697 * 109.47503 * 179.97438 * 16 15 13
18 18 O 1.21292 * 119.99721 * 0.02562 * 17 16 15
19 19 N 1.34779 * 119.99962 * 180.02562 * 17 16 15
20 20 C 1.37101 * 119.99829 * 180.02562 * 19 17 16
21 21 H 1.07997 * 120.00200 * 359.97438 * 20 19 17
22 22 C 1.38944 * 119.99851 * 180.02562 * 20 19 17
23 23 N 1.31411 * 120.00160 * 0.02562 * 22 20 19
24 24 Si 1.86801 * 120.00032 * 179.97438 * 22 20 19
25 25 H 1.48499 * 109.46926 * 60.00174 * 24 22 20
26 26 H 1.48500 * 109.47350 * 179.97438 * 24 22 20
27 27 H 1.48497 * 109.47217 * 300.00312 * 24 22 20
28 28 C 1.53778 * 87.07764 * 334.56739 * 13 12 10
29 29 O 1.34304 * 125.78797 * 180.31178 * 2 1 3
30 30 H 1.08998 * 109.47395 * 179.71425 * 1 2 3
31 31 H 1.09004 * 109.47316 * 299.71258 * 1 2 3
32 32 H 1.08995 * 109.47160 * 59.71311 * 1 2 3
33 33 H 1.08004 * 126.58507 * 0.26980 * 3 2 1
34 34 H 1.08000 * 126.57862 * 179.97438 * 4 3 2
35 35 H 1.08995 * 109.47617 * 209.99888 * 6 5 4
36 36 H 1.09004 * 109.47047 * 330.00557 * 6 5 4
37 37 H 0.96995 * 119.99633 * 0.02562 * 9 7 6
38 38 H 1.09003 * 113.61691 * 254.52691 * 12 10 9
39 39 H 1.09001 * 113.61645 * 25.43086 * 12 10 9
40 40 H 1.00899 * 111.00308 * 16.49134 * 15 13 12
41 41 H 1.09005 * 109.47176 * 300.00775 * 16 15 13
42 42 H 1.09005 * 109.47076 * 60.00018 * 16 15 13
43 43 H 0.97000 * 119.99828 * 0.02562 * 19 17 16
44 44 H 0.97001 * 120.00174 * 180.02562 * 23 22 20
45 45 H 1.09001 * 113.61360 * 270.88350 * 28 13 12
46 46 H 1.09000 * 113.69296 * 139.99687 * 28 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2936 1.0911 0.0000
4 6 3.6309 0.6320 -0.0062
5 6 3.5814 -0.7122 -0.0101
6 6 4.7705 -1.6379 -0.0178
7 6 5.1725 -1.9509 1.4005
8 8 4.5545 -1.4692 2.3263
9 7 6.2194 -2.7652 1.6402
10 6 6.6104 -3.0689 3.0190
11 1 6.2897 -2.3056 3.7279
12 6 6.2646 -4.5023 3.4557
13 6 7.6225 -4.5261 4.1771
14 1 7.5781 -4.1622 5.2036
15 7 8.3328 -5.8062 4.0559
16 6 8.3112 -6.5427 5.3268
17 6 9.0472 -7.8476 5.1638
18 8 9.5415 -8.1355 4.0943
19 7 9.1561 -8.6946 6.2065
20 6 9.8261 -9.8815 6.0584
21 1 10.2663 -10.1380 5.1061
22 6 9.9379 -10.7550 7.1332
23 7 9.4010 -10.4437 8.2915
24 14 10.8502 -12.3725 6.9312
25 1 12.2572 -12.1018 6.5410
26 1 10.8278 -13.1173 8.2158
27 1 10.1914 -13.1840 5.8764
28 6 8.0890 -3.4647 3.1669
29 8 2.2924 -1.0894 -0.0059
30 1 -0.3634 -1.0276 -0.0051
31 1 -0.3634 0.5094 0.8926
32 1 -0.3633 0.5183 -0.8874
33 1 1.9666 2.1204 0.0041
34 1 4.5212 1.2433 -0.0082
35 1 4.5086 -2.5617 -0.5334
36 1 5.6019 -1.1571 -0.5334
37 1 6.7143 -3.1495 0.8998
38 1 5.4106 -4.5591 4.1307
39 1 6.1980 -5.2072 2.6270
40 1 7.9481 -6.3639 3.3082
41 1 8.7949 -5.9464 6.1005
42 1 7.2787 -6.7417 5.6139
43 1 8.7604 -8.4644 7.0617
44 1 9.4794 -11.0533 9.0419
45 1 8.5212 -3.8859 2.2592
46 1 8.7083 -2.6832 3.6073
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001731474068.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:56:29
Heat of formation + Delta-G solvation = -66.448235 kcal
Electronic energy + Delta-G solvation = -26987.296764 eV
Core-core repulsion = 22877.961618 eV
Total energy + Delta-G solvation = -4109.335146 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.168 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-43.55195 -41.19007 -40.18163 -39.37460 -36.12550 -35.44229 -34.21855 -34.04745
-33.47484 -33.16297 -30.80112 -28.43183 -26.63168 -26.48654 -25.82730 -23.84206
-22.75190 -21.73764 -21.38376 -21.04678 -20.64179 -19.88087 -18.28842 -17.99414
-17.64894 -17.07691 -16.91329 -16.83360 -16.39908 -16.29006 -16.04868 -15.75608
-15.36773 -14.97992 -14.86770 -14.41189 -14.30390 -14.17906 -13.75328 -13.74030
-13.64435 -13.53463 -13.45348 -13.41048 -13.13501 -12.97353 -12.82056 -12.54681
-12.43324 -12.15887 -12.13581 -11.92865 -11.77291 -11.49555 -11.03153 -10.79228
-10.33092 -10.06172 -10.01418 -9.24287 -9.20959 -8.46182 -5.95276 0.69797
1.40381 1.42303 1.53282 1.55882 1.61688 1.93320 2.05637 2.28300
2.34412 2.98178 3.21088 3.44898 3.55271 3.63024 3.70846 3.90264
3.94406 4.01109 4.02654 4.12588 4.26809 4.33287 4.44199 4.48212
4.54206 4.56954 4.64238 4.70404 4.79172 4.80979 4.86032 4.90998
5.00199 5.05860 5.09800 5.12069 5.29675 5.40951 5.56024 5.64196
5.92814 6.14269 6.21298 6.41940 6.54413 6.60281 7.12571 7.22422
7.56499 8.11441 8.70869
Molecular weight = 335.17amu
Principal moments of inertia in cm(-1)
A = 0.031522 B = 0.001469 C = 0.001448
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 888.051951 B =19053.576093 C =19336.267714
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.073 4.073
2 C -0.028 4.028
3 C -0.228 4.228
4 C -0.206 4.206
5 C -0.019 4.019
6 C -0.055 4.055
7 C 0.512 3.488
8 O -0.583 6.583
9 N -0.703 5.703
10 C 0.129 3.871
11 H 0.102 0.898
12 C -0.176 4.176
13 C 0.066 3.934
14 H 0.107 0.893
15 N -0.665 5.665
16 C 0.063 3.937
17 C 0.437 3.563
18 O -0.623 6.623
19 N -0.573 5.573
20 C -0.336 4.336
21 H 0.080 0.920
22 C -0.012 4.012
23 N -0.920 5.920
24 Si 0.993 3.007
25 H -0.272 1.272
26 H -0.271 1.271
27 H -0.271 1.271
28 C -0.119 4.119
29 O -0.195 6.195
30 H 0.076 0.924
31 H 0.096 0.904
32 H 0.105 0.895
33 H 0.165 0.835
34 H 0.161 0.839
35 H 0.134 0.866
36 H 0.161 0.839
37 H 0.419 0.581
38 H 0.063 0.937
39 H 0.090 0.910
40 H 0.347 0.653
41 H 0.104 0.896
42 H 0.064 0.936
43 H 0.396 0.604
44 H 0.278 0.722
45 H 0.098 0.902
46 H 0.084 0.916
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.896 22.896 -16.383 31.396
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.130 4.130
2 C -0.078 4.078
3 C -0.247 4.247
4 C -0.225 4.225
5 C -0.069 4.069
6 C -0.094 4.094
7 C 0.300 3.700
8 O -0.462 6.462
9 N -0.354 5.354
10 C 0.023 3.977
11 H 0.120 0.880
12 C -0.217 4.217
13 C -0.045 4.045
14 H 0.125 0.875
15 N -0.296 5.296
16 C -0.069 4.069
17 C 0.225 3.775
18 O -0.510 6.510
19 N -0.211 5.211
20 C -0.466 4.466
21 H 0.098 0.902
22 C -0.212 4.212
23 N -0.561 5.561
24 Si 0.817 3.183
25 H -0.197 1.197
26 H -0.195 1.195
27 H -0.197 1.197
28 C -0.158 4.158
29 O -0.093 6.093
30 H 0.095 0.905
31 H 0.114 0.886
32 H 0.124 0.876
33 H 0.183 0.817
34 H 0.179 0.821
35 H 0.152 0.848
36 H 0.178 0.822
37 H 0.257 0.743
38 H 0.082 0.918
39 H 0.109 0.891
40 H 0.167 0.833
41 H 0.122 0.878
42 H 0.082 0.918
43 H 0.230 0.770
44 H 0.087 0.913
45 H 0.116 0.884
46 H 0.102 0.898
Dipole moment (debyes) X Y Z Total
from point charges -13.475 22.901 -16.128 31.083
hybrid contribution -0.398 -1.106 0.482 1.271
sum -13.873 21.795 -15.646 30.204
Atomic orbital electron populations
1.20472 0.82858 1.04608 1.05015 1.23166 0.95528 0.83868 1.05221
1.21874 0.92738 1.00370 1.09732 1.21846 0.99098 0.93996 1.07537
1.21984 0.82995 0.94750 1.07166 1.20254 0.93799 1.01235 0.94125
1.20968 0.79712 0.77717 0.91651 1.90733 1.54465 1.53490 1.47537
1.45825 1.32005 1.48594 1.08995 1.22204 0.95897 0.95686 0.83929
0.88027 1.24185 0.98559 0.97942 1.01000 1.22952 0.91610 0.90147
0.99811 0.87516 1.60048 1.58959 1.05458 1.05113 1.21592 0.99028
0.92003 0.94276 1.20902 0.85032 0.87251 0.84355 1.90482 1.53676
1.78230 1.28576 1.41943 1.49461 1.17355 1.12295 1.19653 1.32364
0.96014 0.98554 0.90217 1.26044 0.98178 1.02779 0.94222 1.69669
1.45221 1.39141 1.02090 0.84983 0.78480 0.77065 0.77775 1.19684
1.19547 1.19661 1.23378 0.94500 0.97632 1.00295 1.83922 1.17078
1.36302 1.71956 0.90507 0.88587 0.87636 0.81721 0.82135 0.84815
0.82176 0.74297 0.91796 0.89129 0.83337 0.87769 0.91796 0.77005
0.91310 0.88392 0.89757
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.77 10.42 71.24 0.74 -0.02 16
2 C -0.03 -0.53 7.32 24.83 0.18 -0.35 16
3 C -0.23 -4.13 10.81 22.19 0.24 -3.89 16
4 C -0.21 -3.87 10.81 22.19 0.24 -3.63 16
5 C -0.02 -0.38 5.81 24.83 0.14 -0.23 16
6 C -0.06 -0.66 6.23 29.10 0.18 -0.47 16
7 C 0.51 9.59 7.82 87.66 0.69 10.28 16
8 O -0.58 -17.15 15.63 -3.05 -0.05 -17.19 16
9 N -0.70 -9.92 5.35 -440.04 -2.36 -12.28 16
10 C 0.13 2.27 4.24 45.52 0.19 2.46 16
11 H 0.10 2.14 7.46 -2.39 -0.02 2.13 16
12 C -0.18 -3.46 7.50 31.12 0.23 -3.22 16
13 C 0.07 1.40 4.18 45.44 0.19 1.59 16
14 H 0.11 2.15 7.87 -2.39 -0.02 2.13 16
15 N -0.66 -19.62 6.24 -492.87 -3.08 -22.70 16
16 C 0.06 2.12 6.01 85.56 0.51 2.64 16
17 C 0.44 20.61 7.82 87.66 0.69 21.30 16
18 O -0.62 -34.10 15.78 -3.07 -0.05 -34.15 16
19 N -0.57 -29.40 5.29 -306.99 -1.62 -31.02 16
20 C -0.34 -19.10 9.68 84.04 0.81 -18.29 16
21 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16
22 C -0.01 -0.66 5.50 84.92 0.47 -0.20 16
23 N -0.92 -49.71 13.05 21.66 0.28 -49.43 16
24 Si 0.99 42.80 29.55 68.60 2.03 44.83 16
25 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16
26 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16
27 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16
28 C -0.12 -2.03 7.63 31.12 0.24 -1.80 16
29 O -0.19 -4.48 10.65 -2.51 -0.03 -4.50 16
30 H 0.08 0.77 8.14 -2.39 -0.02 0.76 16
31 H 0.10 0.79 8.14 -2.38 -0.02 0.77 16
32 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16
33 H 0.17 2.14 8.06 -2.91 -0.02 2.12 16
34 H 0.16 2.32 8.06 -2.91 -0.02 2.29 16
35 H 0.13 1.01 8.14 -2.39 -0.02 0.99 16
36 H 0.16 0.68 8.14 -2.39 -0.02 0.66 16
37 H 0.42 3.22 8.73 -92.71 -0.81 2.41 16
38 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16
39 H 0.09 1.74 7.83 -2.39 -0.02 1.72 16
40 H 0.35 10.71 7.90 -89.69 -0.71 10.00 16
41 H 0.10 3.15 8.13 -2.38 -0.02 3.13 16
42 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16
43 H 0.40 19.32 7.90 -92.71 -0.73 18.58 16
44 H 0.28 14.07 8.31 -92.71 -0.77 13.30 16
45 H 0.10 1.60 8.12 -2.39 -0.02 1.58 16
46 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16
Total: -1.00 -79.39 395.31 -0.34 -79.73
By element:
Atomic # 1 Polarization: 41.77 SS G_CDS: -1.22 Total: 40.55 kcal
Atomic # 6 Polarization: 0.42 SS G_CDS: 5.75 Total: 6.17 kcal
Atomic # 7 Polarization: -108.65 SS G_CDS: -6.77 Total: -115.43 kcal
Atomic # 8 Polarization: -55.72 SS G_CDS: -0.12 Total: -55.84 kcal
Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal
Total: -79.39 -0.34 -79.73 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001731474068.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 13.277 kcal
(2) G-P(sol) polarization free energy of solvation -79.388 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.111 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.337 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.725 kcal
(6) G-S(sol) free energy of system = (1) + (5) -66.448 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds