Wall clock time and date at job start Tue Mar 31 2020 20:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50704 * 109.46991 * 2 1 4 4 O 1.33657 * 125.80104 * 270.18888 * 3 2 1 5 5 C 1.34217 * 110.90391 * 180.28811 * 4 3 2 6 6 C 1.34173 * 109.12522 * 359.72678 * 5 4 3 7 7 C 1.36412 * 125.79942 * 90.00134 * 3 2 1 8 8 C 1.47378 * 127.19397 * 359.97438 * 7 3 2 9 9 O 1.21613 * 120.00091 * 34.76588 * 8 7 3 10 10 N 1.34779 * 120.00012 * 214.76953 * 8 7 3 11 11 C 1.46507 * 119.99931 * 355.55518 * 10 8 7 12 12 C 1.46499 * 120.00361 * 175.55599 * 10 8 7 13 13 C 1.53516 * 114.16969 * 119.99555 * 12 10 8 14 14 N 1.47483 * 87.92840 * 87.81867 * 13 12 10 15 15 C 1.46898 * 110.99953 * 138.70105 * 14 13 12 16 16 C 1.50704 * 109.47038 * 169.99455 * 15 14 13 17 17 O 1.21301 * 119.99912 * 0.02562 * 16 15 14 18 18 N 1.34775 * 120.00146 * 179.72304 * 16 15 14 19 19 C 1.37095 * 120.00000 * 180.02562 * 18 16 15 20 20 H 1.07995 * 120.00519 * 0.02562 * 19 18 16 21 21 C 1.38955 * 119.99663 * 180.02562 * 19 18 16 22 22 N 1.31408 * 119.99640 * 180.02562 * 21 19 18 23 23 Si 1.86796 * 120.00197 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.47070 * 90.00015 * 23 21 19 25 25 H 1.48500 * 109.47257 * 210.00412 * 23 21 19 26 26 H 1.48502 * 109.47317 * 330.00543 * 23 21 19 27 27 C 1.47482 * 87.83867 * 27.00922 * 14 13 12 28 28 H 1.08999 * 109.47385 * 59.99888 * 1 2 3 29 29 H 1.09007 * 109.47185 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47097 * 299.99767 * 1 2 3 31 31 H 1.09002 * 109.47097 * 240.00232 * 2 1 3 32 32 H 1.08999 * 109.47385 * 120.00112 * 2 1 3 33 33 H 1.07999 * 125.43355 * 179.72699 * 5 4 3 34 34 H 1.08003 * 127.01928 * 179.97438 * 6 5 4 35 35 H 1.08999 * 109.47075 * 275.29868 * 11 10 8 36 36 H 1.09007 * 109.47029 * 35.29622 * 11 10 8 37 37 H 1.08995 * 109.46984 * 155.29325 * 11 10 8 38 38 H 1.09000 * 113.25329 * 347.05145 * 12 10 8 39 39 H 1.08998 * 113.47973 * 333.05303 * 13 12 10 40 40 H 1.09000 * 113.47474 * 202.58031 * 13 12 10 41 41 H 1.09003 * 109.46967 * 50.00160 * 15 14 13 42 42 H 1.08996 * 109.47023 * 289.99887 * 15 14 13 43 43 H 0.96998 * 119.99557 * 0.02562 * 18 16 15 44 44 H 0.97002 * 120.00182 * 179.97438 * 22 21 19 45 45 H 1.08994 * 113.47629 * 87.75631 * 27 14 13 46 46 H 1.09002 * 113.47256 * 218.22657 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 8 2.2895 2.1592 -1.0840 5 6 2.7288 3.3796 -0.7390 6 6 2.7643 3.4720 0.5991 7 6 2.2982 2.1732 1.1064 8 6 2.1541 1.7669 2.5157 9 8 2.3848 0.6190 2.8443 10 7 1.7666 2.6676 3.4404 11 6 1.5828 4.0715 3.0637 12 6 1.5290 2.2430 4.8223 13 6 2.4217 2.9424 5.8570 14 7 1.4061 4.0092 5.9329 15 6 1.1971 4.4392 7.3219 16 6 0.3469 5.6834 7.3400 17 8 -0.0466 6.1643 6.2983 18 7 0.0187 6.2583 8.5140 19 6 -0.7552 7.3898 8.5305 20 1 -1.1022 7.8203 7.6029 21 6 -1.0930 7.9828 9.7409 22 7 -1.8352 9.0671 9.7567 23 14 -0.4935 7.2378 11.3455 24 1 0.8197 7.8301 11.7060 25 1 -1.4769 7.5221 12.4213 26 1 -0.3464 5.7689 11.1849 27 6 0.4023 3.0051 5.5338 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.0090 4.1623 -1.4284 34 1 3.0728 4.3259 1.1840 35 1 2.5417 4.5879 3.1075 36 1 1.1864 4.1267 2.0498 37 1 0.8836 4.5442 3.7534 38 1 1.4771 1.1603 4.9368 39 1 3.3755 3.2790 5.4509 40 1 2.5322 2.3814 6.7850 41 1 2.1606 4.6509 7.7856 42 1 0.6936 3.6469 7.8756 43 1 0.3301 5.8714 9.3472 44 1 -2.0715 9.4809 10.6017 45 1 -0.0259 2.4609 6.3754 46 1 -0.3550 3.3950 4.8537 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733303629.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:36 Heat of formation + Delta-G solvation = 4.113980 kcal Electronic energy + Delta-G solvation = -28884.810025 eV Core-core repulsion = 24778.534686 eV Total energy + Delta-G solvation = -4106.275338 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.82981 -40.85076 -38.98983 -37.88925 -35.03988 -34.34253 -33.94388 -32.86666 -31.68803 -30.19203 -29.04622 -27.12674 -26.09310 -25.68114 -24.48177 -23.50323 -22.71964 -21.62456 -19.73149 -19.41182 -18.75698 -18.41434 -17.63403 -16.87532 -16.38249 -16.18775 -15.92381 -15.63712 -15.24473 -15.08392 -14.86367 -14.64027 -14.51166 -13.98020 -13.53376 -13.45640 -13.21500 -13.02209 -12.95601 -12.88012 -12.61151 -12.45246 -12.42111 -12.02630 -11.86231 -11.77204 -11.55222 -11.33762 -11.20485 -11.01792 -10.83198 -10.61058 -10.13347 -9.98843 -9.87124 -9.57384 -8.92538 -8.87836 -8.63495 -8.34544 -8.18700 -6.32065 -3.83402 1.21113 1.86189 2.53485 2.81831 3.00666 3.03934 3.05333 3.13664 3.72713 3.91215 4.09034 4.21416 4.38337 4.46356 4.64681 4.66890 4.79426 4.83332 4.91464 5.08939 5.13302 5.20458 5.26167 5.28248 5.35350 5.40267 5.49185 5.53004 5.55607 5.57611 5.65120 5.69328 5.73926 5.77269 5.86681 5.91093 5.92550 6.06601 6.15326 6.36428 6.52507 6.80626 6.98473 7.33631 7.57122 8.05314 8.13242 8.59451 8.94536 9.41691 9.83101 10.81174 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.023999 B = 0.002244 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.439416 B =12473.664184 C =12913.833582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.055 4.055 3 C 0.070 3.930 4 O -0.176 6.176 5 C -0.042 4.042 6 C -0.185 4.185 7 C -0.235 4.235 8 C 0.593 3.407 9 O -0.546 6.546 10 N -0.578 5.578 11 C 0.074 3.926 12 C 0.117 3.883 13 C -0.017 4.017 14 N -0.438 5.438 15 C 0.004 3.996 16 C 0.456 3.544 17 O -0.558 6.558 18 N -0.594 5.594 19 C -0.304 4.304 20 H 0.119 0.881 21 C 0.041 3.959 22 N -0.882 5.882 23 Si 0.880 3.120 24 H -0.271 1.271 25 H -0.277 1.277 26 H -0.270 1.270 27 C -0.006 4.006 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.084 0.916 32 H 0.112 0.888 33 H 0.208 0.792 34 H 0.162 0.838 35 H 0.055 0.945 36 H 0.068 0.932 37 H 0.103 0.897 38 H 0.113 0.887 39 H 0.088 0.912 40 H 0.078 0.922 41 H 0.089 0.911 42 H 0.062 0.938 43 H 0.369 0.631 44 H 0.273 0.727 45 H 0.081 0.919 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.208 -17.371 -16.138 25.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.092 4.092 3 C 0.017 3.983 4 O -0.072 6.072 5 C -0.107 4.107 6 C -0.204 4.204 7 C -0.239 4.239 8 C 0.383 3.617 9 O -0.425 6.425 10 N -0.309 5.309 11 C -0.069 4.069 12 C 0.012 3.988 13 C -0.147 4.147 14 N -0.160 5.160 15 C -0.128 4.128 16 C 0.241 3.759 17 O -0.439 6.439 18 N -0.234 5.234 19 C -0.432 4.432 20 H 0.137 0.863 21 C -0.162 4.162 22 N -0.522 5.522 23 Si 0.706 3.294 24 H -0.196 1.196 25 H -0.202 1.202 26 H -0.196 1.196 27 C -0.136 4.136 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.103 0.897 32 H 0.131 0.869 33 H 0.225 0.775 34 H 0.179 0.821 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.122 0.878 38 H 0.131 0.869 39 H 0.106 0.894 40 H 0.096 0.904 41 H 0.108 0.892 42 H 0.080 0.920 43 H 0.202 0.798 44 H 0.084 0.916 45 H 0.099 0.901 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 8.976 -16.874 -17.188 25.705 hybrid contribution 0.437 -0.535 2.305 2.406 sum 9.413 -17.410 -14.884 24.764 Atomic orbital electron populations 1.21752 0.93438 1.02723 1.02560 1.20394 0.96756 0.86719 1.05375 1.22709 0.98265 0.94182 0.83094 1.83755 1.65258 1.23295 1.34893 1.23892 1.04179 0.86217 0.96441 1.23095 1.05254 0.97678 0.94370 1.21036 1.13429 0.95844 0.93598 1.17278 0.76134 0.84460 0.83819 1.90738 1.51185 1.19237 1.81331 1.47208 1.66330 1.09612 1.07744 1.22177 1.02885 0.80094 1.01704 1.22032 0.96431 0.99437 0.80883 1.24351 0.98417 0.93310 0.98653 1.68864 1.03942 1.23407 1.19756 1.22555 1.00973 0.98000 0.91278 1.19553 0.85267 0.86583 0.84450 1.90550 1.56521 1.65099 1.31721 1.42226 1.48318 1.26609 1.06224 1.19413 1.26261 1.00947 0.96613 0.86318 1.25036 0.97084 0.96176 0.97924 1.69619 1.36267 1.19219 1.27132 0.86672 0.79520 0.79168 0.84002 1.19644 1.20201 1.19585 1.24319 0.96605 0.92787 0.99910 0.92296 0.91223 0.92159 0.89716 0.86943 0.77546 0.82071 0.92630 0.91393 0.87818 0.86882 0.89404 0.90387 0.89246 0.92016 0.79800 0.91634 0.90086 0.88778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.89 37.15 0.37 -0.79 16 2 C -0.06 -0.49 6.26 -27.88 -0.17 -0.66 16 3 C 0.07 0.75 6.62 -34.96 -0.23 0.52 16 4 O -0.18 -1.75 10.52 7.64 0.08 -1.67 16 5 C -0.04 -0.34 12.03 29.30 0.35 0.01 16 6 C -0.18 -1.79 8.77 -37.46 -0.33 -2.11 16 7 C -0.23 -2.78 5.54 -103.28 -0.57 -3.35 16 8 C 0.59 7.98 7.50 -12.54 -0.09 7.88 16 9 O -0.55 -8.41 14.98 5.27 0.08 -8.33 16 10 N -0.58 -7.32 3.11 -174.90 -0.54 -7.87 16 11 C 0.07 0.90 8.22 59.85 0.49 1.39 16 12 C 0.12 1.42 4.64 -67.72 -0.31 1.11 16 13 C -0.02 -0.20 7.31 -7.53 -0.06 -0.25 16 14 N -0.44 -6.49 4.30 -246.07 -1.06 -7.55 16 15 C 0.00 0.07 5.30 -4.98 -0.03 0.04 16 16 C 0.46 10.13 7.85 -10.98 -0.09 10.04 16 17 O -0.56 -14.63 16.01 5.54 0.09 -14.54 16 18 N -0.59 -13.96 5.09 -10.96 -0.06 -14.01 16 19 C -0.30 -8.52 10.16 -14.93 -0.15 -8.67 16 20 H 0.12 3.81 7.39 -52.49 -0.39 3.42 16 21 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 22 N -0.88 -25.67 13.96 55.50 0.77 -24.90 16 23 Si 0.88 19.24 27.74 -169.99 -4.71 14.53 16 24 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 25 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 26 H -0.27 -5.37 6.52 56.52 0.37 -5.00 16 27 C -0.01 -0.09 6.72 -7.53 -0.05 -0.14 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.11 1.13 6.55 -51.93 -0.34 0.79 16 33 H 0.21 0.87 8.06 -52.49 -0.42 0.45 16 34 H 0.16 1.35 6.40 -52.48 -0.34 1.02 16 35 H 0.06 0.64 7.37 -51.93 -0.38 0.26 16 36 H 0.07 0.75 5.80 -51.92 -0.30 0.45 16 37 H 0.10 1.52 5.52 -51.93 -0.29 1.24 16 38 H 0.11 1.34 7.32 -51.93 -0.38 0.96 16 39 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.08 0.77 7.91 -51.93 -0.41 0.36 16 41 H 0.09 1.26 8.08 -51.93 -0.42 0.84 16 42 H 0.06 0.84 7.30 -51.93 -0.38 0.46 16 43 H 0.37 7.62 5.76 -40.82 -0.24 7.38 16 44 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 45 H 0.08 0.95 7.42 -51.93 -0.39 0.56 16 46 H 0.09 1.37 7.36 -51.93 -0.38 0.99 16 LS Contribution 376.01 15.07 5.67 5.67 Total: -1.00 -34.63 376.01 -6.98 -41.61 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: -6.33 Total: 11.03 kcal Atomic # 6 Polarization: 7.01 SS G_CDS: -0.97 Total: 6.04 kcal Atomic # 7 Polarization: -53.45 SS G_CDS: -0.88 Total: -54.33 kcal Atomic # 8 Polarization: -24.79 SS G_CDS: 0.25 Total: -24.54 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -4.71 Total: 14.53 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.63 -6.98 -41.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733303629.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.728 kcal (2) G-P(sol) polarization free energy of solvation -34.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds