Wall clock time and date at job start Tue Mar 31 2020 20:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50704 * 109.46991 * 2 1 4 4 O 1.33657 * 125.80104 * 270.18888 * 3 2 1 5 5 C 1.34217 * 110.90391 * 180.28811 * 4 3 2 6 6 C 1.34173 * 109.12522 * 359.72678 * 5 4 3 7 7 C 1.36412 * 125.79942 * 90.00134 * 3 2 1 8 8 C 1.47378 * 127.19397 * 359.97438 * 7 3 2 9 9 O 1.21613 * 120.00091 * 34.76588 * 8 7 3 10 10 N 1.34779 * 120.00012 * 214.76953 * 8 7 3 11 11 C 1.46507 * 119.99931 * 355.55518 * 10 8 7 12 12 C 1.46499 * 120.00361 * 175.55599 * 10 8 7 13 13 C 1.53516 * 114.16969 * 119.99555 * 12 10 8 14 14 N 1.47483 * 87.92840 * 87.81867 * 13 12 10 15 15 C 1.46898 * 110.99953 * 138.70105 * 14 13 12 16 16 C 1.50704 * 109.47038 * 169.99455 * 15 14 13 17 17 O 1.21301 * 119.99912 * 0.02562 * 16 15 14 18 18 N 1.34775 * 120.00146 * 179.72304 * 16 15 14 19 19 C 1.37095 * 120.00000 * 180.02562 * 18 16 15 20 20 H 1.07995 * 120.00519 * 0.02562 * 19 18 16 21 21 C 1.38955 * 119.99663 * 180.02562 * 19 18 16 22 22 N 1.31408 * 119.99640 * 180.02562 * 21 19 18 23 23 Si 1.86796 * 120.00197 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.47070 * 90.00015 * 23 21 19 25 25 H 1.48500 * 109.47257 * 210.00412 * 23 21 19 26 26 H 1.48502 * 109.47317 * 330.00543 * 23 21 19 27 27 C 1.47482 * 87.83867 * 27.00922 * 14 13 12 28 28 H 1.08999 * 109.47385 * 59.99888 * 1 2 3 29 29 H 1.09007 * 109.47185 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47097 * 299.99767 * 1 2 3 31 31 H 1.09002 * 109.47097 * 240.00232 * 2 1 3 32 32 H 1.08999 * 109.47385 * 120.00112 * 2 1 3 33 33 H 1.07999 * 125.43355 * 179.72699 * 5 4 3 34 34 H 1.08003 * 127.01928 * 179.97438 * 6 5 4 35 35 H 1.08999 * 109.47075 * 275.29868 * 11 10 8 36 36 H 1.09007 * 109.47029 * 35.29622 * 11 10 8 37 37 H 1.08995 * 109.46984 * 155.29325 * 11 10 8 38 38 H 1.09000 * 113.25329 * 347.05145 * 12 10 8 39 39 H 1.08998 * 113.47973 * 333.05303 * 13 12 10 40 40 H 1.09000 * 113.47474 * 202.58031 * 13 12 10 41 41 H 1.09003 * 109.46967 * 50.00160 * 15 14 13 42 42 H 1.08996 * 109.47023 * 289.99887 * 15 14 13 43 43 H 0.96998 * 119.99557 * 0.02562 * 18 16 15 44 44 H 0.97002 * 120.00182 * 179.97438 * 22 21 19 45 45 H 1.08994 * 113.47629 * 87.75631 * 27 14 13 46 46 H 1.09002 * 113.47256 * 218.22657 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 8 2.2895 2.1592 -1.0840 5 6 2.7288 3.3796 -0.7390 6 6 2.7643 3.4720 0.5991 7 6 2.2982 2.1732 1.1064 8 6 2.1541 1.7669 2.5157 9 8 2.3848 0.6190 2.8443 10 7 1.7666 2.6676 3.4404 11 6 1.5828 4.0715 3.0637 12 6 1.5290 2.2430 4.8223 13 6 2.4217 2.9424 5.8570 14 7 1.4061 4.0092 5.9329 15 6 1.1971 4.4392 7.3219 16 6 0.3469 5.6834 7.3400 17 8 -0.0466 6.1643 6.2983 18 7 0.0187 6.2583 8.5140 19 6 -0.7552 7.3898 8.5305 20 1 -1.1022 7.8203 7.6029 21 6 -1.0930 7.9828 9.7409 22 7 -1.8352 9.0671 9.7567 23 14 -0.4935 7.2378 11.3455 24 1 0.8197 7.8301 11.7060 25 1 -1.4769 7.5221 12.4213 26 1 -0.3464 5.7689 11.1849 27 6 0.4023 3.0051 5.5338 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.0090 4.1623 -1.4284 34 1 3.0728 4.3259 1.1840 35 1 2.5417 4.5879 3.1075 36 1 1.1864 4.1267 2.0498 37 1 0.8836 4.5442 3.7534 38 1 1.4771 1.1603 4.9368 39 1 3.3755 3.2790 5.4509 40 1 2.5322 2.3814 6.7850 41 1 2.1606 4.6509 7.7856 42 1 0.6936 3.6469 7.8756 43 1 0.3301 5.8714 9.3472 44 1 -2.0715 9.4809 10.6017 45 1 -0.0259 2.4609 6.3754 46 1 -0.3550 3.3950 4.8537 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733303629.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:35 Heat of formation + Delta-G solvation = -21.900393 kcal Electronic energy + Delta-G solvation = -28885.938092 eV Core-core repulsion = 24778.534686 eV Total energy + Delta-G solvation = -4107.403406 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.58513 -41.91323 -40.27069 -39.46437 -36.14874 -35.86597 -35.06372 -33.77563 -33.63002 -31.42263 -29.78810 -28.24415 -27.40993 -26.84485 -25.69891 -24.54034 -23.68266 -22.44092 -21.26980 -20.59222 -20.28650 -19.66731 -18.55192 -17.87567 -17.68994 -17.22018 -17.03579 -16.80603 -16.62702 -16.27673 -16.10961 -15.74626 -15.28644 -15.14946 -14.89060 -14.81604 -14.40841 -14.35250 -14.18832 -13.91451 -13.66288 -13.56526 -13.44934 -13.25491 -13.04674 -12.78111 -12.58831 -12.50345 -12.41380 -12.10543 -12.01681 -11.99144 -11.89808 -11.49153 -11.13327 -10.70999 -10.44221 -10.22768 -9.78370 -9.72015 -9.49958 -8.40310 -6.00722 0.37364 1.13158 1.29948 1.35852 1.44389 1.72517 1.95507 1.99300 2.11203 2.23435 2.66126 3.15123 3.24783 3.40479 3.55211 3.60400 3.76254 3.93943 4.10605 4.11787 4.18503 4.25755 4.31080 4.37760 4.38547 4.45132 4.48634 4.56311 4.60539 4.64470 4.73647 4.79415 4.82745 4.92921 5.02168 5.03817 5.10622 5.26430 5.30111 5.36590 5.52890 5.54376 5.88603 5.99893 6.05864 6.33932 6.61350 6.90515 7.04181 7.42319 8.00405 8.77505 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.023999 B = 0.002244 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.439416 B =12473.664184 C =12913.833582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.055 4.055 3 C 0.065 3.935 4 O -0.179 6.179 5 C -0.028 4.028 6 C -0.202 4.202 7 C -0.263 4.263 8 C 0.591 3.409 9 O -0.571 6.571 10 N -0.580 5.580 11 C 0.085 3.915 12 C 0.119 3.881 13 C -0.004 4.004 14 N -0.467 5.467 15 C 0.016 3.984 16 C 0.455 3.545 17 O -0.607 6.607 18 N -0.595 5.595 19 C -0.325 4.325 20 H 0.054 0.946 21 C -0.017 4.017 22 N -0.936 5.936 23 Si 0.965 3.035 24 H -0.258 1.258 25 H -0.277 1.277 26 H -0.230 1.230 27 C -0.005 4.005 28 H 0.064 0.936 29 H 0.086 0.914 30 H 0.040 0.960 31 H 0.106 0.894 32 H 0.097 0.903 33 H 0.248 0.752 34 H 0.170 0.830 35 H 0.061 0.939 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.120 0.880 39 H 0.086 0.914 40 H 0.109 0.891 41 H 0.118 0.882 42 H 0.097 0.903 43 H 0.389 0.611 44 H 0.278 0.722 45 H 0.102 0.898 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.141 -19.737 -15.224 27.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.092 4.092 3 C 0.012 3.988 4 O -0.075 6.075 5 C -0.093 4.093 6 C -0.221 4.221 7 C -0.267 4.267 8 C 0.382 3.618 9 O -0.452 6.452 10 N -0.310 5.310 11 C -0.057 4.057 12 C 0.014 3.986 13 C -0.133 4.133 14 N -0.190 5.190 15 C -0.115 4.115 16 C 0.242 3.758 17 O -0.490 6.490 18 N -0.238 5.238 19 C -0.455 4.455 20 H 0.072 0.928 21 C -0.216 4.216 22 N -0.577 5.577 23 Si 0.785 3.215 24 H -0.183 1.183 25 H -0.202 1.202 26 H -0.154 1.154 27 C -0.135 4.135 28 H 0.083 0.917 29 H 0.105 0.895 30 H 0.059 0.941 31 H 0.124 0.876 32 H 0.116 0.884 33 H 0.264 0.736 34 H 0.187 0.813 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.137 0.863 39 H 0.104 0.896 40 H 0.127 0.873 41 H 0.136 0.864 42 H 0.114 0.886 43 H 0.224 0.776 44 H 0.088 0.912 45 H 0.120 0.880 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 10.925 -19.259 -16.286 27.486 hybrid contribution -0.199 0.264 1.831 1.860 sum 10.726 -18.995 -14.455 26.169 Atomic orbital electron populations 1.21722 0.92796 1.03649 1.01825 1.20433 0.97223 0.85911 1.05632 1.23017 0.97908 0.94832 0.83061 1.83778 1.65191 1.23939 1.34608 1.24657 1.01970 0.85997 0.96657 1.23248 1.06323 0.97298 0.95245 1.21145 1.15072 0.97392 0.93085 1.17523 0.75617 0.84106 0.84521 1.90710 1.52518 1.20134 1.81876 1.47281 1.66003 1.09579 1.08118 1.22032 1.02434 0.79833 1.01400 1.22056 0.96212 0.99627 0.80742 1.24363 0.97258 0.92069 0.99613 1.68831 1.05540 1.25274 1.19323 1.22502 1.01061 0.95186 0.92763 1.20873 0.84154 0.87616 0.83140 1.90534 1.58092 1.66843 1.33538 1.42063 1.48319 1.25671 1.07725 1.18981 1.28311 1.03268 0.94892 0.92758 1.26115 0.96579 0.96272 1.02585 1.69807 1.37902 1.21240 1.28794 0.85363 0.78991 0.80385 0.76755 1.18264 1.20183 1.15360 1.24352 0.96193 0.92597 1.00354 0.91715 0.89503 0.94097 0.87597 0.88448 0.73634 0.81282 0.92049 0.90539 0.90437 0.86266 0.89598 0.87276 0.86385 0.88572 0.77582 0.91231 0.87971 0.91240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.89 71.98 0.71 -1.44 16 2 C -0.06 -0.93 6.26 29.85 0.19 -0.75 16 3 C 0.06 1.35 6.62 25.26 0.17 1.52 16 4 O -0.18 -3.29 10.52 4.40 0.05 -3.24 16 5 C -0.03 -0.40 12.03 66.89 0.80 0.41 16 6 C -0.20 -3.71 8.77 23.65 0.21 -3.51 16 7 C -0.26 -6.15 5.54 -18.99 -0.11 -6.26 16 8 C 0.59 15.92 7.50 86.65 0.65 16.57 16 9 O -0.57 -17.64 14.98 -4.07 -0.06 -17.70 16 10 N -0.58 -14.58 3.11 -825.50 -2.57 -17.15 16 11 C 0.09 2.11 8.22 127.77 1.05 3.16 16 12 C 0.12 2.73 4.64 45.45 0.21 2.94 16 13 C 0.00 -0.07 7.31 83.58 0.61 0.54 16 14 N -0.47 -13.10 4.30 -932.43 -4.01 -17.10 16 15 C 0.02 0.47 5.30 85.56 0.45 0.93 16 16 C 0.45 20.05 7.85 87.66 0.69 20.74 16 17 O -0.61 -33.08 16.01 -3.10 -0.05 -33.13 16 18 N -0.60 -27.64 5.09 -306.97 -1.56 -29.20 16 19 C -0.33 -18.94 10.16 84.04 0.85 -18.09 16 20 H 0.05 3.78 7.39 -2.91 -0.02 3.76 16 21 C -0.02 -0.95 5.50 84.93 0.47 -0.49 16 22 N -0.94 -56.47 13.96 21.66 0.30 -56.17 16 23 Si 0.96 38.50 27.74 68.60 1.90 40.40 16 24 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 25 H -0.28 -11.01 7.11 99.48 0.71 -10.31 16 26 H -0.23 -7.64 6.52 99.48 0.65 -6.99 16 27 C -0.01 -0.14 6.72 83.58 0.56 0.43 16 28 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.09 0.98 8.14 -2.38 -0.02 0.97 16 30 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.10 1.97 6.55 -2.39 -0.02 1.96 16 33 H 0.25 1.25 8.06 -2.91 -0.02 1.23 16 34 H 0.17 2.70 6.40 -2.91 -0.02 2.68 16 35 H 0.06 1.42 7.37 -2.39 -0.02 1.40 16 36 H 0.08 1.73 5.80 -2.38 -0.01 1.71 16 37 H 0.08 2.38 5.52 -2.39 -0.01 2.36 16 38 H 0.12 2.64 7.32 -2.39 -0.02 2.62 16 39 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.11 1.64 7.91 -2.39 -0.02 1.62 16 41 H 0.12 2.78 8.08 -2.39 -0.02 2.76 16 42 H 0.10 2.16 7.30 -2.39 -0.02 2.14 16 43 H 0.39 14.84 5.76 -92.71 -0.53 14.30 16 44 H 0.28 15.34 8.31 -92.71 -0.77 14.57 16 45 H 0.10 2.12 7.42 -2.39 -0.02 2.10 16 46 H 0.07 2.09 7.36 -2.39 -0.02 2.07 16 Total: -1.00 -81.94 376.01 1.95 -79.99 By element: Atomic # 1 Polarization: 36.19 SS G_CDS: 0.43 Total: 36.61 kcal Atomic # 6 Polarization: 9.18 SS G_CDS: 7.52 Total: 16.69 kcal Atomic # 7 Polarization: -111.79 SS G_CDS: -7.84 Total: -119.63 kcal Atomic # 8 Polarization: -54.01 SS G_CDS: -0.06 Total: -54.07 kcal Atomic # 14 Polarization: 38.50 SS G_CDS: 1.90 Total: 40.40 kcal Total: -81.94 1.95 -79.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733303629.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.094 kcal (2) G-P(sol) polarization free energy of solvation -81.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds