Wall clock time and date at job start Tue Mar 31 2020 19:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30249 * 125.62135 * 2 1 4 4 C 1.34488 * 108.69945 * 179.97438 * 3 2 1 5 5 C 1.34327 * 107.66928 * 359.97438 * 4 3 2 6 6 C 1.50697 * 126.44545 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.47112 * 90.00098 * 6 5 4 8 8 O 1.21283 * 120.00308 * 0.02562 * 7 6 5 9 9 N 1.34783 * 120.00002 * 180.02562 * 7 6 5 10 10 C 1.46503 * 119.99976 * 180.02562 * 9 7 6 11 11 C 1.52999 * 109.46997 * 179.97438 * 10 9 7 12 12 H 1.09002 * 110.36655 * 57.81709 * 11 10 9 13 13 C 1.54554 * 110.32309 * 179.97438 * 11 10 9 14 14 C 1.54765 * 104.07660 * 142.49135 * 13 11 10 15 15 C 1.53345 * 103.67441 * 359.13588 * 14 13 11 16 16 C 1.52315 * 116.12389 * 108.90977 * 15 14 13 17 17 N 1.47287 * 87.68609 * 91.18717 * 16 15 14 18 18 C 1.36932 * 135.92689 * 206.13005 * 17 16 15 19 19 H 1.08002 * 120.00602 * 7.53991 * 18 17 16 20 20 C 1.38817 * 119.99605 * 187.54286 * 18 17 16 21 21 N 1.31629 * 119.99629 * 174.50923 * 20 18 17 22 22 Si 1.86799 * 120.00381 * 354.50965 * 20 18 17 23 23 H 1.48490 * 109.47132 * 174.95477 * 22 20 18 24 24 H 1.48498 * 109.46803 * 294.95709 * 22 20 18 25 25 H 1.48501 * 109.46836 * 54.95491 * 22 20 18 26 26 C 1.47290 * 88.14245 * 26.37920 * 17 16 15 27 27 O 1.43101 * 106.44702 * 337.45430 * 15 14 13 28 28 O 1.33970 * 125.61564 * 180.28348 * 2 1 3 29 29 H 1.08998 * 109.47112 * 90.02156 * 1 2 3 30 30 H 1.09001 * 109.47174 * 210.02767 * 1 2 3 31 31 H 1.09003 * 109.46716 * 330.02437 * 1 2 3 32 32 H 1.08001 * 126.16164 * 179.97438 * 4 3 2 33 33 H 1.09003 * 109.47037 * 330.00256 * 6 5 4 34 34 H 1.08996 * 109.47258 * 210.00363 * 6 5 4 35 35 H 0.96993 * 119.99797 * 359.97438 * 9 7 6 36 36 H 1.08993 * 109.47334 * 59.99526 * 10 9 7 37 37 H 1.09006 * 109.46709 * 299.99122 * 10 9 7 38 38 H 1.08997 * 110.50615 * 23.84079 * 13 11 10 39 39 H 1.08999 * 110.62489 * 261.19660 * 13 11 10 40 40 H 1.09004 * 110.58530 * 240.59490 * 14 13 11 41 41 H 1.08996 * 110.71390 * 117.75142 * 14 13 11 42 42 H 1.08995 * 113.52003 * 336.47968 * 16 15 14 43 43 H 1.09007 * 113.57984 * 205.89345 * 16 15 14 44 44 H 0.97000 * 119.99952 * 354.91136 * 21 20 18 45 45 H 1.09003 * 113.51578 * 88.32543 * 26 17 16 46 46 H 1.08997 * 113.51428 * 218.91971 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6673 0.0006 5 6 3.5698 -0.6758 0.0015 6 6 4.7936 -1.5552 0.0029 7 6 5.2005 -1.8473 1.4242 8 8 4.5596 -1.3872 2.3453 9 7 6.2768 -2.6200 1.6717 10 6 6.6721 -2.9045 3.0535 11 6 7.9147 -3.7971 3.0549 12 1 8.7279 -3.3162 2.5112 13 6 8.3497 -4.1094 4.5047 14 6 8.8295 -5.5795 4.4454 15 6 8.6046 -5.9755 2.9811 16 6 9.8581 -6.1524 2.1341 17 7 9.8455 -7.5740 2.5192 18 6 10.7791 -8.5680 2.6435 19 1 11.8298 -8.3371 2.5480 20 6 10.3749 -9.8725 2.8920 21 7 11.2618 -10.8452 2.9041 22 14 8.5727 -10.2478 3.2093 23 1 8.3857 -11.7164 3.3243 24 1 8.1460 -9.5939 4.4724 25 1 7.7539 -9.7312 2.0833 26 6 8.3889 -7.4609 2.7062 27 8 7.6096 -5.0839 2.4685 28 8 2.2872 -1.0891 -0.0054 29 1 -0.3633 -0.0004 -1.0276 30 1 -0.3633 -0.8897 0.5143 31 1 -0.3633 0.8902 0.5135 32 1 4.4157 1.3160 0.0003 33 1 5.6083 -1.0447 -0.5107 34 1 4.5697 -2.4902 -0.5104 35 1 6.7892 -2.9882 0.9351 36 1 5.8575 -3.4154 3.5666 37 1 6.8955 -1.9694 3.5672 38 1 7.5050 -4.0105 5.1865 39 1 9.1649 -3.4536 4.8106 40 1 8.2310 -6.2051 5.1077 41 1 9.8860 -5.6510 4.7039 42 1 10.7211 -5.6063 2.5150 43 1 9.6916 -5.9889 1.0693 44 1 12.1845 -10.6631 2.6670 45 1 7.8174 -7.6567 1.7988 46 1 8.0167 -8.0147 3.5680 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733792709.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:04 Heat of formation + Delta-G solvation = 7.195485 kcal Electronic energy + Delta-G solvation = -28318.420072 eV Core-core repulsion = 24212.278358 eV Total energy + Delta-G solvation = -4106.141714 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.60429 -40.47852 -39.75235 -37.06090 -35.01303 -34.78332 -33.53686 -32.39146 -32.12828 -31.03279 -29.44854 -27.32259 -26.19588 -25.63514 -23.85492 -22.65977 -21.65510 -21.47571 -21.39382 -20.53106 -19.20226 -17.80803 -17.49365 -17.36189 -16.69101 -16.64983 -16.26341 -15.82671 -15.58827 -14.97847 -14.84302 -14.57930 -14.34698 -13.94211 -13.70899 -13.57910 -13.40481 -13.32842 -13.16001 -13.08088 -12.86618 -12.62955 -12.29229 -12.01526 -11.64927 -11.59772 -11.52345 -11.34716 -11.05436 -10.82814 -10.74273 -10.48190 -10.37467 -10.26144 -9.76917 -9.36290 -9.22672 -9.05054 -8.96754 -8.96520 -7.25632 -6.36411 -3.31640 1.10867 2.24411 2.30354 2.40873 2.96135 3.36994 3.41017 3.59939 3.73959 3.78650 4.22754 4.47814 4.51618 4.54081 4.58821 4.61353 4.68892 4.76069 4.85411 4.87126 4.92699 4.96831 5.09409 5.10907 5.20001 5.30384 5.35164 5.40552 5.52552 5.54765 5.68789 5.72449 5.84891 6.04281 6.07309 6.10818 6.13552 6.18141 6.20706 6.26879 6.30155 6.47816 6.98657 7.17334 7.17790 7.44266 7.89179 8.16173 8.89779 9.41552 10.26364 11.13455 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.022435 B = 0.002058 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.753714 B =13601.129901 C =14133.524088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.191 3.809 3 N -0.485 5.485 4 C -0.024 4.024 5 C -0.028 4.028 6 C -0.057 4.057 7 C 0.513 3.487 8 O -0.534 6.534 9 N -0.720 5.720 10 C 0.128 3.872 11 C 0.062 3.938 12 H 0.076 0.924 13 C -0.145 4.145 14 C -0.115 4.115 15 C 0.060 3.940 16 C 0.110 3.890 17 N -0.619 5.619 18 C -0.304 4.304 19 H 0.084 0.916 20 C -0.022 4.022 21 N -0.931 5.931 22 Si 1.067 2.933 23 H -0.293 1.293 24 H -0.292 1.292 25 H -0.285 1.285 26 C 0.112 3.888 27 O -0.355 6.355 28 O -0.196 6.196 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.101 0.899 32 H 0.182 0.818 33 H 0.129 0.871 34 H 0.117 0.883 35 H 0.408 0.592 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.085 0.915 42 H 0.047 0.953 43 H 0.044 0.956 44 H 0.261 0.739 45 H 0.054 0.946 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.308 22.808 -5.048 27.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.016 4.016 3 N -0.215 5.215 4 C -0.163 4.163 5 C -0.081 4.081 6 C -0.097 4.097 7 C 0.299 3.701 8 O -0.410 6.410 9 N -0.372 5.372 10 C 0.005 3.995 11 C 0.004 3.996 12 H 0.094 0.906 13 C -0.184 4.184 14 C -0.152 4.152 15 C 0.020 3.980 16 C -0.017 4.017 17 N -0.349 5.349 18 C -0.430 4.430 19 H 0.102 0.898 20 C -0.221 4.221 21 N -0.573 5.573 22 Si 0.899 3.101 23 H -0.220 1.220 24 H -0.220 1.220 25 H -0.212 1.212 26 C -0.014 4.014 27 O -0.273 6.273 28 O -0.083 6.083 29 H 0.111 0.889 30 H 0.107 0.893 31 H 0.119 0.881 32 H 0.199 0.801 33 H 0.147 0.853 34 H 0.135 0.865 35 H 0.243 0.757 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.096 0.904 41 H 0.104 0.896 42 H 0.065 0.935 43 H 0.061 0.939 44 H 0.071 0.929 45 H 0.072 0.928 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -17.058 22.236 -4.090 28.322 hybrid contribution 1.973 0.377 -0.750 2.144 sum -15.085 22.613 -4.839 27.610 Atomic orbital electron populations 1.20264 0.81296 1.05249 1.04622 1.26270 0.96458 0.78597 1.00258 1.70431 1.02031 1.30302 1.18733 1.22973 0.95173 0.92698 1.05457 1.22426 0.83198 0.94747 1.07757 1.20047 0.92402 1.01068 0.96150 1.20310 0.80401 0.78642 0.90789 1.90758 1.52839 1.51291 1.46140 1.45853 1.30204 1.51617 1.09553 1.21515 0.96556 0.98508 0.82931 1.23211 0.95800 0.86237 0.94361 0.90634 1.22946 1.01783 0.97576 0.96057 1.22335 1.03058 0.94516 0.95318 1.23628 0.89739 0.91529 0.93145 1.22678 0.94774 0.87336 0.96877 1.45758 1.02120 1.07896 1.79138 1.20109 0.87578 0.86528 1.48741 0.89783 1.25734 1.06616 0.90404 0.99395 1.70925 1.04046 1.32144 1.50135 0.83769 0.74940 0.75101 0.76308 1.22041 1.22010 1.21214 1.22710 0.88348 0.90687 0.99641 1.88941 1.51363 1.17954 1.69028 1.84361 1.16472 1.37794 1.69711 0.88923 0.89274 0.88070 0.80052 0.85333 0.86504 0.75742 0.90495 0.90093 0.90432 0.90254 0.90372 0.89603 0.93501 0.93857 0.92859 0.92850 0.92285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.31 10.51 36.01 0.38 0.07 16 2 C 0.19 1.99 8.34 -12.95 -0.11 1.88 16 3 N -0.49 -5.79 11.29 -11.10 -0.13 -5.92 16 4 C -0.02 -0.26 11.80 -17.77 -0.21 -0.47 16 5 C -0.03 -0.29 5.88 -35.69 -0.21 -0.50 16 6 C -0.06 -0.41 6.25 -29.04 -0.18 -0.59 16 7 C 0.51 5.37 7.82 -10.98 -0.09 5.28 16 8 O -0.53 -7.97 16.03 5.56 0.09 -7.88 16 9 N -0.72 -6.58 5.52 -60.29 -0.33 -6.91 16 10 C 0.13 1.31 5.28 -4.04 -0.02 1.28 16 11 C 0.06 0.68 3.35 -25.92 -0.09 0.59 16 12 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 13 C -0.15 -1.58 6.65 -24.99 -0.17 -1.75 16 14 C -0.11 -1.69 6.50 -25.62 -0.17 -1.86 16 15 C 0.06 1.03 1.39 -91.01 -0.13 0.90 16 16 C 0.11 2.10 8.18 -7.84 -0.06 2.04 16 17 N -0.62 -14.87 3.68 -184.84 -0.68 -15.55 16 18 C -0.30 -8.57 11.08 -15.06 -0.17 -8.74 16 19 H 0.08 2.49 8.06 -52.49 -0.42 2.07 16 20 C -0.02 -0.65 5.50 -17.42 -0.10 -0.75 16 21 N -0.93 -28.97 13.70 55.49 0.76 -28.21 16 22 Si 1.07 26.49 25.17 -169.99 -4.28 22.21 16 23 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 24 H -0.29 -6.82 6.49 56.52 0.37 -6.45 16 25 H -0.29 -6.67 6.18 56.52 0.35 -6.32 16 26 C 0.11 2.36 5.27 -7.69 -0.04 2.32 16 27 O -0.35 -5.23 11.12 -35.23 -0.39 -5.62 16 28 O -0.20 -2.27 10.78 5.35 0.06 -2.22 16 29 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.18 1.42 8.06 -52.49 -0.42 1.00 16 33 H 0.13 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.12 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.41 2.94 8.47 -40.82 -0.35 2.59 16 36 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.08 0.77 7.87 -51.93 -0.41 0.36 16 39 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.08 1.18 8.12 -51.93 -0.42 0.76 16 41 H 0.09 1.33 7.92 -51.93 -0.41 0.92 16 42 H 0.05 0.84 8.07 -51.93 -0.42 0.42 16 43 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.26 8.02 8.73 -40.82 -0.36 7.66 16 45 H 0.05 1.14 7.60 -51.93 -0.39 0.75 16 46 H 0.06 1.29 4.77 -51.93 -0.25 1.04 16 LS Contribution 379.96 15.07 5.73 5.73 Total: -1.00 -37.37 379.96 -7.49 -44.86 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -6.96 Total: -0.20 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: -1.35 Total: -0.28 kcal Atomic # 7 Polarization: -56.22 SS G_CDS: -0.38 Total: -56.59 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: -0.24 Total: -15.72 kcal Atomic # 14 Polarization: 26.49 SS G_CDS: -4.28 Total: 22.21 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -37.37 -7.49 -44.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733792709.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.056 kcal (2) G-P(sol) polarization free energy of solvation -37.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds