Wall clock time and date at job start Tue Mar 31 2020 19:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30249 * 125.62135 * 2 1 4 4 C 1.34488 * 108.69945 * 179.97438 * 3 2 1 5 5 C 1.34327 * 107.66928 * 359.97438 * 4 3 2 6 6 C 1.50697 * 126.44545 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.47112 * 90.00098 * 6 5 4 8 8 O 1.21283 * 120.00308 * 0.02562 * 7 6 5 9 9 N 1.34783 * 120.00002 * 180.02562 * 7 6 5 10 10 C 1.46503 * 119.99976 * 180.02562 * 9 7 6 11 11 C 1.52999 * 109.46997 * 179.97438 * 10 9 7 12 12 H 1.09002 * 110.36655 * 57.81709 * 11 10 9 13 13 C 1.54554 * 110.32309 * 179.97438 * 11 10 9 14 14 C 1.54765 * 104.07660 * 142.49135 * 13 11 10 15 15 C 1.53345 * 103.67441 * 359.13588 * 14 13 11 16 16 C 1.52315 * 116.12389 * 108.90977 * 15 14 13 17 17 N 1.47287 * 87.68609 * 91.18717 * 16 15 14 18 18 C 1.36932 * 135.92689 * 206.13005 * 17 16 15 19 19 H 1.08002 * 120.00602 * 7.53991 * 18 17 16 20 20 C 1.38817 * 119.99605 * 187.54286 * 18 17 16 21 21 N 1.31629 * 119.99629 * 174.50923 * 20 18 17 22 22 Si 1.86799 * 120.00381 * 354.50965 * 20 18 17 23 23 H 1.48490 * 109.47132 * 174.95477 * 22 20 18 24 24 H 1.48498 * 109.46803 * 294.95709 * 22 20 18 25 25 H 1.48501 * 109.46836 * 54.95491 * 22 20 18 26 26 C 1.47290 * 88.14245 * 26.37920 * 17 16 15 27 27 O 1.43101 * 106.44702 * 337.45430 * 15 14 13 28 28 O 1.33970 * 125.61564 * 180.28348 * 2 1 3 29 29 H 1.08998 * 109.47112 * 90.02156 * 1 2 3 30 30 H 1.09001 * 109.47174 * 210.02767 * 1 2 3 31 31 H 1.09003 * 109.46716 * 330.02437 * 1 2 3 32 32 H 1.08001 * 126.16164 * 179.97438 * 4 3 2 33 33 H 1.09003 * 109.47037 * 330.00256 * 6 5 4 34 34 H 1.08996 * 109.47258 * 210.00363 * 6 5 4 35 35 H 0.96993 * 119.99797 * 359.97438 * 9 7 6 36 36 H 1.08993 * 109.47334 * 59.99526 * 10 9 7 37 37 H 1.09006 * 109.46709 * 299.99122 * 10 9 7 38 38 H 1.08997 * 110.50615 * 23.84079 * 13 11 10 39 39 H 1.08999 * 110.62489 * 261.19660 * 13 11 10 40 40 H 1.09004 * 110.58530 * 240.59490 * 14 13 11 41 41 H 1.08996 * 110.71390 * 117.75142 * 14 13 11 42 42 H 1.08995 * 113.52003 * 336.47968 * 16 15 14 43 43 H 1.09007 * 113.57984 * 205.89345 * 16 15 14 44 44 H 0.97000 * 119.99952 * 354.91136 * 21 20 18 45 45 H 1.09003 * 113.51578 * 88.32543 * 26 17 16 46 46 H 1.08997 * 113.51428 * 218.91971 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6673 0.0006 5 6 3.5698 -0.6758 0.0015 6 6 4.7936 -1.5552 0.0029 7 6 5.2005 -1.8473 1.4242 8 8 4.5596 -1.3872 2.3453 9 7 6.2768 -2.6200 1.6717 10 6 6.6721 -2.9045 3.0535 11 6 7.9147 -3.7971 3.0549 12 1 8.7279 -3.3162 2.5112 13 6 8.3497 -4.1094 4.5047 14 6 8.8295 -5.5795 4.4454 15 6 8.6046 -5.9755 2.9811 16 6 9.8581 -6.1524 2.1341 17 7 9.8455 -7.5740 2.5192 18 6 10.7791 -8.5680 2.6435 19 1 11.8298 -8.3371 2.5480 20 6 10.3749 -9.8725 2.8920 21 7 11.2618 -10.8452 2.9041 22 14 8.5727 -10.2478 3.2093 23 1 8.3857 -11.7164 3.3243 24 1 8.1460 -9.5939 4.4724 25 1 7.7539 -9.7312 2.0833 26 6 8.3889 -7.4609 2.7062 27 8 7.6096 -5.0839 2.4685 28 8 2.2872 -1.0891 -0.0054 29 1 -0.3633 -0.0004 -1.0276 30 1 -0.3633 -0.8897 0.5143 31 1 -0.3633 0.8902 0.5135 32 1 4.4157 1.3160 0.0003 33 1 5.6083 -1.0447 -0.5107 34 1 4.5697 -2.4902 -0.5104 35 1 6.7892 -2.9882 0.9351 36 1 5.8575 -3.4154 3.5666 37 1 6.8955 -1.9694 3.5672 38 1 7.5050 -4.0105 5.1865 39 1 9.1649 -3.4536 4.8106 40 1 8.2310 -6.2051 5.1077 41 1 9.8860 -5.6510 4.7039 42 1 10.7211 -5.6063 2.5150 43 1 9.6916 -5.9889 1.0693 44 1 12.1845 -10.6631 2.6670 45 1 7.8174 -7.6567 1.7988 46 1 8.0167 -8.0147 3.5680 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733792709.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:03 Heat of formation + Delta-G solvation = -23.839013 kcal Electronic energy + Delta-G solvation = -28319.765829 eV Core-core repulsion = 24212.278358 eV Total energy + Delta-G solvation = -4107.487471 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.33955 -41.71800 -40.66659 -38.42576 -35.78446 -35.75133 -34.49661 -34.18208 -33.15301 -31.70914 -30.62328 -28.83260 -27.30298 -26.92370 -24.94481 -23.48550 -23.24802 -22.31945 -22.26400 -21.33632 -20.75181 -19.51243 -18.56032 -18.10194 -17.63896 -17.52683 -17.30100 -17.09698 -16.46752 -16.35164 -16.17518 -15.46581 -15.24205 -15.17699 -15.02056 -14.69186 -14.60995 -14.26069 -14.04654 -13.82554 -13.76015 -13.41589 -13.30727 -13.16372 -13.01540 -12.75305 -12.68602 -12.50794 -12.30598 -12.24201 -12.04525 -11.67317 -11.60222 -11.35682 -11.25742 -11.12446 -11.05229 -10.48202 -10.15866 -9.67459 -9.27868 -8.63981 -5.51483 0.38294 1.37207 1.45656 1.53843 1.58296 1.64404 1.69459 2.23462 2.50763 2.60486 2.96907 3.15488 3.21704 3.38863 3.57567 3.60330 3.67774 3.87908 3.96576 4.03930 4.11425 4.14375 4.36783 4.38590 4.42383 4.47743 4.54866 4.62159 4.62465 4.64891 4.67902 4.70337 4.81518 4.84189 4.94725 5.00243 5.01909 5.02984 5.11152 5.13268 5.22225 5.36400 5.37962 5.91252 5.95950 6.47489 6.65787 6.70429 7.16485 7.27906 8.21027 8.87685 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.022435 B = 0.002058 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.753714 B =13601.129901 C =14133.524088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.182 3.818 3 N -0.518 5.518 4 C -0.041 4.041 5 C -0.041 4.041 6 C -0.049 4.049 7 C 0.513 3.487 8 O -0.584 6.584 9 N -0.711 5.711 10 C 0.132 3.868 11 C 0.064 3.936 12 H 0.097 0.903 13 C -0.136 4.136 14 C -0.119 4.119 15 C 0.085 3.915 16 C 0.110 3.890 17 N -0.649 5.649 18 C -0.286 4.286 19 H 0.056 0.944 20 C -0.081 4.081 21 N -0.968 5.968 22 Si 1.103 2.897 23 H -0.303 1.303 24 H -0.270 1.270 25 H -0.264 1.264 26 C 0.099 3.901 27 O -0.361 6.361 28 O -0.214 6.214 29 H 0.113 0.887 30 H 0.101 0.899 31 H 0.109 0.891 32 H 0.202 0.798 33 H 0.169 0.831 34 H 0.136 0.864 35 H 0.419 0.581 36 H 0.060 0.940 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.104 0.896 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.058 0.942 43 H 0.054 0.946 44 H 0.248 0.752 45 H 0.054 0.946 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.729 25.043 -5.460 30.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.024 4.024 3 N -0.248 5.248 4 C -0.179 4.179 5 C -0.094 4.094 6 C -0.089 4.089 7 C 0.301 3.699 8 O -0.464 6.464 9 N -0.363 5.363 10 C 0.009 3.991 11 C 0.007 3.993 12 H 0.115 0.885 13 C -0.174 4.174 14 C -0.157 4.157 15 C 0.044 3.956 16 C -0.016 4.016 17 N -0.379 5.379 18 C -0.414 4.414 19 H 0.074 0.926 20 C -0.274 4.274 21 N -0.613 5.613 22 Si 0.929 3.071 23 H -0.231 1.231 24 H -0.197 1.197 25 H -0.190 1.190 26 C -0.026 4.026 27 O -0.279 6.279 28 O -0.102 6.102 29 H 0.131 0.869 30 H 0.119 0.881 31 H 0.127 0.873 32 H 0.218 0.782 33 H 0.186 0.814 34 H 0.154 0.846 35 H 0.256 0.744 36 H 0.078 0.922 37 H 0.112 0.888 38 H 0.108 0.892 39 H 0.122 0.878 40 H 0.092 0.908 41 H 0.095 0.905 42 H 0.076 0.924 43 H 0.072 0.928 44 H 0.057 0.943 45 H 0.071 0.929 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -18.466 24.529 -4.532 31.036 hybrid contribution 2.440 -0.180 -0.662 2.535 sum -16.026 24.349 -5.194 29.609 Atomic orbital electron populations 1.20523 0.78451 1.06205 1.06240 1.27231 0.98034 0.78122 0.99027 1.70430 1.02958 1.31281 1.20152 1.23408 0.95488 0.93443 1.05519 1.22992 0.83625 0.95298 1.07504 1.20222 0.92260 1.02031 0.94344 1.20811 0.79825 0.77756 0.91558 1.90742 1.54465 1.53340 1.47901 1.45797 1.29917 1.50985 1.09631 1.21433 0.95535 0.98648 0.83518 1.23419 0.96805 0.84585 0.94538 0.88481 1.22944 1.03066 0.95116 0.96261 1.22362 1.02638 0.97202 0.93505 1.23093 0.88729 0.89647 0.94123 1.22863 0.96454 0.84415 0.97839 1.45779 1.03103 1.09131 1.79888 1.19966 0.87485 0.87709 1.46221 0.92571 1.26955 1.09588 0.90746 1.00070 1.71018 1.03757 1.33301 1.53240 0.83338 0.71327 0.74535 0.77910 1.23113 1.19695 1.18978 1.22858 0.86390 0.93932 0.99402 1.88925 1.50417 1.19260 1.69311 1.84366 1.17270 1.38505 1.70063 0.86850 0.88074 0.87258 0.78155 0.81378 0.84605 0.74357 0.92204 0.88800 0.89240 0.87769 0.90839 0.90492 0.92356 0.92820 0.94294 0.92858 0.92793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.55 10.51 71.24 0.75 0.20 16 2 C 0.18 3.67 8.34 88.34 0.74 4.41 16 3 N -0.52 -12.13 11.29 -303.83 -3.43 -15.56 16 4 C -0.04 -0.83 11.80 83.39 0.98 0.16 16 5 C -0.04 -0.80 5.88 24.79 0.15 -0.65 16 6 C -0.05 -0.57 6.25 29.10 0.18 -0.39 16 7 C 0.51 9.52 7.82 87.65 0.69 10.21 16 8 O -0.58 -16.77 16.03 -3.04 -0.05 -16.82 16 9 N -0.71 -10.69 5.52 -463.05 -2.55 -13.24 16 10 C 0.13 2.26 5.28 86.38 0.46 2.72 16 11 C 0.06 1.15 3.35 31.12 0.10 1.25 16 12 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 13 C -0.14 -2.42 6.65 31.73 0.21 -2.21 16 14 C -0.12 -3.20 6.50 31.31 0.20 -3.00 16 15 C 0.09 2.67 1.39 -11.04 -0.02 2.66 16 16 C 0.11 3.94 8.18 83.49 0.68 4.63 16 17 N -0.65 -30.58 3.68 -740.19 -2.72 -33.30 16 18 C -0.29 -16.38 11.08 84.04 0.93 -15.45 16 19 H 0.06 3.44 8.06 -2.91 -0.02 3.42 16 20 C -0.08 -4.83 5.50 84.86 0.47 -4.36 16 21 N -0.97 -62.13 13.70 21.65 0.30 -61.83 16 22 Si 1.10 53.46 25.17 68.60 1.73 55.19 16 23 H -0.30 -15.07 7.11 99.48 0.71 -14.37 16 24 H -0.27 -12.00 6.49 99.48 0.65 -11.35 16 25 H -0.26 -11.75 6.18 99.48 0.61 -11.13 16 26 C 0.10 4.00 5.27 83.58 0.44 4.44 16 27 O -0.36 -9.39 11.12 -148.98 -1.66 -11.04 16 28 O -0.21 -4.79 10.78 -3.79 -0.04 -4.83 16 29 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.20 2.88 8.06 -2.91 -0.02 2.85 16 33 H 0.17 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.14 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.42 4.38 8.47 -92.71 -0.79 3.60 16 36 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 38 H 0.09 1.43 7.87 -2.39 -0.02 1.41 16 39 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.07 2.05 8.12 -2.38 -0.02 2.03 16 41 H 0.08 2.21 7.92 -2.39 -0.02 2.19 16 42 H 0.06 1.96 8.07 -2.39 -0.02 1.94 16 43 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 44 H 0.25 15.92 8.73 -92.71 -0.81 15.11 16 45 H 0.05 2.16 7.60 -2.39 -0.02 2.15 16 46 H 0.05 2.24 4.77 -2.39 -0.01 2.23 16 Total: -1.00 -84.36 379.96 -1.44 -85.80 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: 0.02 Total: 11.03 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: 6.96 Total: 4.61 kcal Atomic # 7 Polarization: -115.52 SS G_CDS: -8.41 Total: -123.93 kcal Atomic # 8 Polarization: -30.95 SS G_CDS: -1.75 Total: -32.69 kcal Atomic # 14 Polarization: 53.46 SS G_CDS: 1.73 Total: 55.19 kcal Total: -84.36 -1.44 -85.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733792709.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.962 kcal (2) G-P(sol) polarization free energy of solvation -84.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds