Wall clock time and date at job start Tue Mar 31 2020 19:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30253 * 125.61490 * 2 1 4 4 C 1.34481 * 108.69761 * 179.77827 * 3 2 1 5 5 C 1.34332 * 107.66774 * 0.39154 * 4 3 2 6 6 C 1.50701 * 126.44278 * 179.87646 * 5 4 3 7 7 C 1.50704 * 109.47214 * 89.71536 * 6 5 4 8 8 O 1.21287 * 119.99780 * 359.97438 * 7 6 5 9 9 N 1.34765 * 120.00077 * 179.97438 * 7 6 5 10 10 C 1.46499 * 120.00097 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.47731 * 179.97438 * 10 9 7 12 12 H 1.09001 * 110.26754 * 304.38925 * 11 10 9 13 13 C 1.55008 * 110.38906 * 182.25484 * 11 10 9 14 14 C 1.55487 * 101.04696 * 205.00481 * 13 11 10 15 15 C 1.53652 * 101.96773 * 33.48573 * 14 13 11 16 16 C 1.52702 * 115.26849 * 206.90010 * 15 14 13 17 17 N 1.47208 * 87.79904 * 219.25812 * 16 15 14 18 18 C 1.36932 * 135.97409 * 206.46511 * 17 16 15 19 19 H 1.08006 * 119.99674 * 6.76869 * 18 17 16 20 20 C 1.38811 * 120.00374 * 186.77404 * 18 17 16 21 21 N 1.31618 * 120.00337 * 172.31805 * 20 18 17 22 22 Si 1.86801 * 119.99849 * 352.31733 * 20 18 17 23 23 H 1.48494 * 109.47270 * 175.35407 * 22 20 18 24 24 H 1.48506 * 109.46884 * 55.35502 * 22 20 18 25 25 H 1.48499 * 109.47041 * 295.36080 * 22 20 18 26 26 C 1.47215 * 88.05332 * 26.71222 * 17 16 15 27 27 O 1.42391 * 108.53485 * 339.13619 * 15 14 13 28 28 O 1.33961 * 125.61958 * 180.02562 * 2 1 3 29 29 H 1.08994 * 109.47271 * 269.97533 * 1 2 3 30 30 H 1.09003 * 109.47088 * 29.97827 * 1 2 3 31 31 H 1.08999 * 109.46751 * 149.97443 * 1 2 3 32 32 H 1.08004 * 126.16982 * 180.27348 * 4 3 2 33 33 H 1.08997 * 109.47347 * 329.71276 * 6 5 4 34 34 H 1.09003 * 109.47158 * 209.71259 * 6 5 4 35 35 H 0.97000 * 120.00229 * 0.02562 * 9 7 6 36 36 H 1.08999 * 109.47633 * 59.99814 * 10 9 7 37 37 H 1.09005 * 109.47353 * 299.99834 * 10 9 7 38 38 H 1.09001 * 111.10723 * 322.95484 * 13 11 10 39 39 H 1.09002 * 111.10122 * 87.01743 * 13 11 10 40 40 H 1.09005 * 110.92676 * 275.31722 * 14 13 11 41 41 H 1.08998 * 110.93082 * 151.65951 * 14 13 11 42 42 H 1.08999 * 113.49717 * 104.52035 * 16 15 14 43 43 H 1.09001 * 113.55301 * 334.00276 * 16 15 14 44 44 H 0.97002 * 119.99927 * 4.89802 * 21 20 18 45 45 H 1.08996 * 113.49635 * 88.02371 * 26 17 16 46 46 H 1.09000 * 113.49895 * 218.56016 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2655 1.0589 0.0000 4 6 3.5521 0.6676 0.0049 5 6 3.5698 -0.6756 -0.0007 6 6 4.7937 -1.5548 -0.0008 7 6 5.2016 -1.8482 1.4200 8 8 4.5617 -1.3882 2.3419 9 7 6.2774 -2.6217 1.6661 10 6 6.6742 -2.9065 3.0473 11 6 7.9160 -3.8003 3.0473 12 1 7.7294 -4.7060 2.4703 13 6 8.3214 -4.1615 4.4992 14 6 9.8389 -4.4499 4.3219 15 6 10.2240 -3.4591 3.2125 16 6 11.4181 -3.8724 2.3551 17 7 11.8431 -2.4630 2.3682 18 6 12.5763 -1.6481 1.5476 19 1 12.9023 -2.0062 0.5822 20 6 12.9006 -0.3618 1.9566 21 7 13.7289 0.3676 1.2395 22 14 12.1613 0.3340 3.5246 23 1 12.7482 1.6704 3.7980 24 1 12.4575 -0.5781 4.6586 25 1 10.6907 0.4625 3.3639 26 6 11.1397 -2.3152 3.6530 27 8 9.0439 -3.0879 2.5075 28 8 2.2872 -1.0890 -0.0005 29 1 -0.3633 -0.0004 1.0276 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3633 -0.8898 -0.5142 32 1 4.4157 1.3162 0.0103 33 1 5.6081 -1.0440 -0.5145 34 1 4.5696 -2.4896 -0.5149 35 1 6.7894 -2.9893 0.9289 36 1 5.8599 -3.4168 3.5616 37 1 6.8991 -1.9717 3.5609 38 1 8.1577 -3.3206 5.1732 39 1 7.7905 -5.0482 4.8458 40 1 10.0049 -5.4782 4.0005 41 1 10.3856 -4.2376 5.2407 42 1 11.1384 -4.2329 1.3652 43 1 12.1113 -4.5402 2.8667 44 1 14.0572 0.0345 0.3897 45 1 11.7570 -2.5607 4.5171 46 1 10.6248 -1.3604 3.7592 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733792710.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:09 Heat of formation + Delta-G solvation = 10.694694 kcal Electronic energy + Delta-G solvation = -28670.292802 eV Core-core repulsion = 24564.302824 eV Total energy + Delta-G solvation = -4105.989977 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.49840 -40.38228 -39.63326 -36.97279 -34.90910 -34.66157 -33.42169 -32.38269 -32.12161 -30.97281 -29.48918 -27.25102 -26.03032 -25.51703 -23.83948 -22.56856 -21.62434 -21.49399 -21.08480 -20.45014 -19.34768 -17.69214 -17.52110 -17.23691 -16.82424 -16.55129 -16.13670 -15.79688 -15.59984 -14.64851 -14.50354 -14.37132 -14.00115 -13.99102 -13.83529 -13.41825 -13.37713 -13.23041 -13.21558 -13.05196 -12.89235 -12.71184 -12.32872 -12.12841 -11.71844 -11.66162 -11.41157 -11.38192 -10.86049 -10.71282 -10.69163 -10.48822 -10.30416 -10.14756 -9.67189 -9.24677 -9.18060 -8.85484 -8.83912 -8.79822 -7.12995 -6.29581 -3.19412 1.21491 2.32670 2.44465 2.52642 3.06369 3.41594 3.48141 3.66105 3.71527 3.83943 4.36281 4.41139 4.58196 4.61669 4.64336 4.70459 4.74345 4.81164 4.84744 4.91253 5.01671 5.03330 5.06267 5.18309 5.27257 5.30995 5.39439 5.46870 5.52036 5.65214 5.67666 5.78903 5.83970 5.88903 6.01994 6.15913 6.17123 6.19689 6.22857 6.28915 6.38368 6.46116 7.11852 7.29346 7.41276 7.55260 8.01278 8.25213 8.99789 9.52481 10.38100 11.23373 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013288 B = 0.002662 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.600014 B =10515.144012 C =11825.334525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.187 3.813 3 N -0.483 5.483 4 C -0.021 4.021 5 C -0.029 4.029 6 C -0.056 4.056 7 C 0.514 3.486 8 O -0.535 6.535 9 N -0.719 5.719 10 C 0.124 3.876 11 C 0.062 3.938 12 H 0.077 0.923 13 C -0.146 4.146 14 C -0.137 4.137 15 C 0.069 3.931 16 C 0.117 3.883 17 N -0.621 5.621 18 C -0.300 4.300 19 H 0.082 0.918 20 C -0.026 4.026 21 N -0.936 5.936 22 Si 1.071 2.929 23 H -0.296 1.296 24 H -0.288 1.288 25 H -0.292 1.292 26 C 0.095 3.905 27 O -0.332 6.332 28 O -0.199 6.199 29 H 0.092 0.908 30 H 0.100 0.900 31 H 0.087 0.913 32 H 0.184 0.816 33 H 0.132 0.868 34 H 0.114 0.886 35 H 0.408 0.592 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.050 0.950 43 H 0.048 0.952 44 H 0.260 0.740 45 H 0.055 0.945 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.027 -10.970 0.702 25.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.019 4.019 3 N -0.213 5.213 4 C -0.160 4.160 5 C -0.082 4.082 6 C -0.096 4.096 7 C 0.299 3.701 8 O -0.411 6.411 9 N -0.371 5.371 10 C 0.000 4.000 11 C 0.004 3.996 12 H 0.094 0.906 13 C -0.184 4.184 14 C -0.176 4.176 15 C 0.028 3.972 16 C -0.009 4.009 17 N -0.349 5.349 18 C -0.426 4.426 19 H 0.100 0.900 20 C -0.224 4.224 21 N -0.578 5.578 22 Si 0.904 3.096 23 H -0.223 1.223 24 H -0.215 1.215 25 H -0.220 1.220 26 C -0.031 4.031 27 O -0.251 6.251 28 O -0.086 6.086 29 H 0.111 0.889 30 H 0.119 0.881 31 H 0.105 0.895 32 H 0.201 0.799 33 H 0.150 0.850 34 H 0.133 0.867 35 H 0.243 0.757 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.098 0.902 41 H 0.104 0.896 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.070 0.930 45 H 0.073 0.927 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -23.569 -8.433 2.024 25.114 hybrid contribution 0.793 -2.332 -1.223 2.750 sum -22.776 -10.765 0.801 25.204 Atomic orbital electron populations 1.20242 0.81360 1.04964 1.04712 1.26250 0.96412 0.78680 1.00594 1.70438 1.02087 1.30278 1.18501 1.23045 0.95161 0.92850 1.04922 1.22432 0.83052 0.94819 1.07911 1.20056 0.92507 1.00890 0.96163 1.20303 0.80489 0.78474 0.90807 1.90750 1.53429 1.50865 1.46077 1.45820 1.29749 1.52059 1.09484 1.21565 0.95001 1.00314 0.83115 1.23304 0.87204 0.94364 0.94707 0.90565 1.23222 0.96483 1.02622 0.96096 1.22909 0.95226 0.99884 0.99576 1.23218 0.86329 0.95587 0.92043 1.22624 0.91382 0.89021 0.97904 1.45841 1.63155 1.05770 1.20146 1.20091 1.29069 0.95013 0.98410 0.90026 1.25702 0.97724 0.93277 1.05689 1.70928 1.31044 1.41167 1.14684 0.83691 0.75102 0.75505 0.75343 1.22297 1.21536 1.22032 1.23105 0.91678 0.97276 0.91040 1.88431 1.14249 1.65281 1.57135 1.84328 1.16499 1.37805 1.69946 0.88932 0.88121 0.89452 0.79866 0.85047 0.86748 0.75738 0.90250 0.90437 0.89914 0.89862 0.90218 0.89590 0.93215 0.93420 0.92999 0.92743 0.92542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.34 10.51 36.01 0.38 0.03 16 2 C 0.19 2.15 8.34 -12.95 -0.11 2.04 16 3 N -0.48 -6.58 11.29 -11.10 -0.13 -6.71 16 4 C -0.02 -0.27 11.80 -17.77 -0.21 -0.48 16 5 C -0.03 -0.35 5.88 -35.69 -0.21 -0.56 16 6 C -0.06 -0.51 6.25 -29.03 -0.18 -0.69 16 7 C 0.51 6.36 7.82 -10.99 -0.09 6.27 16 8 O -0.53 -8.90 16.03 5.55 0.09 -8.81 16 9 N -0.72 -7.94 5.54 -60.29 -0.33 -8.28 16 10 C 0.12 1.43 5.39 -4.04 -0.02 1.41 16 11 C 0.06 0.71 3.48 -25.67 -0.09 0.63 16 12 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 13 C -0.15 -1.45 6.58 -24.35 -0.16 -1.62 16 14 C -0.14 -1.62 6.39 -25.07 -0.16 -1.78 16 15 C 0.07 1.17 1.75 -90.44 -0.16 1.01 16 16 C 0.12 2.27 8.20 -8.07 -0.07 2.21 16 17 N -0.62 -15.49 3.70 -184.58 -0.68 -16.17 16 18 C -0.30 -8.79 11.08 -15.06 -0.17 -8.96 16 19 H 0.08 2.51 8.05 -52.48 -0.42 2.09 16 20 C -0.03 -0.77 5.50 -17.43 -0.10 -0.87 16 21 N -0.94 -30.02 13.70 55.49 0.76 -29.26 16 22 Si 1.07 27.59 25.13 -169.99 -4.27 23.32 16 23 H -0.30 -7.72 7.11 56.52 0.40 -7.32 16 24 H -0.29 -6.81 6.11 56.52 0.35 -6.46 16 25 H -0.29 -7.32 6.64 56.52 0.38 -6.94 16 26 C 0.09 2.01 5.19 -7.91 -0.04 1.97 16 27 O -0.33 -5.54 10.84 -35.23 -0.38 -5.93 16 28 O -0.20 -2.47 10.77 5.38 0.06 -2.41 16 29 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.18 2.02 8.06 -52.48 -0.42 1.60 16 33 H 0.13 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.41 3.75 8.47 -40.82 -0.35 3.41 16 36 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.08 0.84 8.05 -51.93 -0.42 0.42 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.08 0.80 8.13 -51.93 -0.42 0.38 16 41 H 0.09 0.95 7.81 -51.93 -0.41 0.55 16 42 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.05 0.85 8.13 -51.93 -0.42 0.42 16 44 H 0.26 8.21 8.73 -40.82 -0.36 7.86 16 45 H 0.06 1.09 7.50 -51.93 -0.39 0.70 16 46 H 0.06 1.29 4.70 -51.93 -0.24 1.05 16 LS Contribution 380.09 15.07 5.73 5.73 Total: -1.00 -39.71 380.09 -7.49 -47.20 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -6.95 Total: 0.70 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: -1.38 Total: 0.62 kcal Atomic # 7 Polarization: -60.04 SS G_CDS: -0.38 Total: -60.42 kcal Atomic # 8 Polarization: -16.92 SS G_CDS: -0.24 Total: -17.15 kcal Atomic # 14 Polarization: 27.59 SS G_CDS: -4.27 Total: 23.32 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -39.71 -7.49 -47.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733792710.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.899 kcal (2) G-P(sol) polarization free energy of solvation -39.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds