Wall clock time and date at job start Tue Mar 31 2020 19:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30253 * 125.61490 * 2 1 4 4 C 1.34481 * 108.69761 * 179.77827 * 3 2 1 5 5 C 1.34332 * 107.66774 * 0.39154 * 4 3 2 6 6 C 1.50701 * 126.44278 * 179.87646 * 5 4 3 7 7 C 1.50704 * 109.47214 * 89.71536 * 6 5 4 8 8 O 1.21287 * 119.99780 * 359.97438 * 7 6 5 9 9 N 1.34765 * 120.00077 * 179.97438 * 7 6 5 10 10 C 1.46499 * 120.00097 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.47731 * 179.97438 * 10 9 7 12 12 H 1.09001 * 110.26754 * 304.38925 * 11 10 9 13 13 C 1.55008 * 110.38906 * 182.25484 * 11 10 9 14 14 C 1.55487 * 101.04696 * 205.00481 * 13 11 10 15 15 C 1.53652 * 101.96773 * 33.48573 * 14 13 11 16 16 C 1.52702 * 115.26849 * 206.90010 * 15 14 13 17 17 N 1.47208 * 87.79904 * 219.25812 * 16 15 14 18 18 C 1.36932 * 135.97409 * 206.46511 * 17 16 15 19 19 H 1.08006 * 119.99674 * 6.76869 * 18 17 16 20 20 C 1.38811 * 120.00374 * 186.77404 * 18 17 16 21 21 N 1.31618 * 120.00337 * 172.31805 * 20 18 17 22 22 Si 1.86801 * 119.99849 * 352.31733 * 20 18 17 23 23 H 1.48494 * 109.47270 * 175.35407 * 22 20 18 24 24 H 1.48506 * 109.46884 * 55.35502 * 22 20 18 25 25 H 1.48499 * 109.47041 * 295.36080 * 22 20 18 26 26 C 1.47215 * 88.05332 * 26.71222 * 17 16 15 27 27 O 1.42391 * 108.53485 * 339.13619 * 15 14 13 28 28 O 1.33961 * 125.61958 * 180.02562 * 2 1 3 29 29 H 1.08994 * 109.47271 * 269.97533 * 1 2 3 30 30 H 1.09003 * 109.47088 * 29.97827 * 1 2 3 31 31 H 1.08999 * 109.46751 * 149.97443 * 1 2 3 32 32 H 1.08004 * 126.16982 * 180.27348 * 4 3 2 33 33 H 1.08997 * 109.47347 * 329.71276 * 6 5 4 34 34 H 1.09003 * 109.47158 * 209.71259 * 6 5 4 35 35 H 0.97000 * 120.00229 * 0.02562 * 9 7 6 36 36 H 1.08999 * 109.47633 * 59.99814 * 10 9 7 37 37 H 1.09005 * 109.47353 * 299.99834 * 10 9 7 38 38 H 1.09001 * 111.10723 * 322.95484 * 13 11 10 39 39 H 1.09002 * 111.10122 * 87.01743 * 13 11 10 40 40 H 1.09005 * 110.92676 * 275.31722 * 14 13 11 41 41 H 1.08998 * 110.93082 * 151.65951 * 14 13 11 42 42 H 1.08999 * 113.49717 * 104.52035 * 16 15 14 43 43 H 1.09001 * 113.55301 * 334.00276 * 16 15 14 44 44 H 0.97002 * 119.99927 * 4.89802 * 21 20 18 45 45 H 1.08996 * 113.49635 * 88.02371 * 26 17 16 46 46 H 1.09000 * 113.49895 * 218.56016 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2655 1.0589 0.0000 4 6 3.5521 0.6676 0.0049 5 6 3.5698 -0.6756 -0.0007 6 6 4.7937 -1.5548 -0.0008 7 6 5.2016 -1.8482 1.4200 8 8 4.5617 -1.3882 2.3419 9 7 6.2774 -2.6217 1.6661 10 6 6.6742 -2.9065 3.0473 11 6 7.9160 -3.8003 3.0473 12 1 7.7294 -4.7060 2.4703 13 6 8.3214 -4.1615 4.4992 14 6 9.8389 -4.4499 4.3219 15 6 10.2240 -3.4591 3.2125 16 6 11.4181 -3.8724 2.3551 17 7 11.8431 -2.4630 2.3682 18 6 12.5763 -1.6481 1.5476 19 1 12.9023 -2.0062 0.5822 20 6 12.9006 -0.3618 1.9566 21 7 13.7289 0.3676 1.2395 22 14 12.1613 0.3340 3.5246 23 1 12.7482 1.6704 3.7980 24 1 12.4575 -0.5781 4.6586 25 1 10.6907 0.4625 3.3639 26 6 11.1397 -2.3152 3.6530 27 8 9.0439 -3.0879 2.5075 28 8 2.2872 -1.0890 -0.0005 29 1 -0.3633 -0.0004 1.0276 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3633 -0.8898 -0.5142 32 1 4.4157 1.3162 0.0103 33 1 5.6081 -1.0440 -0.5145 34 1 4.5696 -2.4896 -0.5149 35 1 6.7894 -2.9893 0.9289 36 1 5.8599 -3.4168 3.5616 37 1 6.8991 -1.9717 3.5609 38 1 8.1577 -3.3206 5.1732 39 1 7.7905 -5.0482 4.8458 40 1 10.0049 -5.4782 4.0005 41 1 10.3856 -4.2376 5.2407 42 1 11.1384 -4.2329 1.3652 43 1 12.1113 -4.5402 2.8667 44 1 14.0572 0.0345 0.3897 45 1 11.7570 -2.5607 4.5171 46 1 10.6248 -1.3604 3.7592 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733792710.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:07 Heat of formation + Delta-G solvation = -23.112633 kcal Electronic energy + Delta-G solvation = -28671.758797 eV Core-core repulsion = 24564.302824 eV Total energy + Delta-G solvation = -4107.455973 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.37890 -41.59444 -40.68950 -38.36023 -35.82280 -35.75712 -34.50254 -34.21757 -33.15022 -31.76282 -30.70481 -28.74069 -27.13316 -26.96036 -25.04307 -23.50068 -22.81025 -22.55829 -22.25102 -21.38161 -20.79617 -19.57998 -18.59822 -18.12228 -17.89346 -17.51739 -17.30601 -17.06255 -16.55637 -16.07703 -15.63930 -15.48020 -15.39627 -15.14931 -15.04418 -14.88433 -14.58874 -14.31511 -14.10208 -13.84707 -13.83180 -13.44621 -13.34841 -13.28808 -13.02798 -12.67363 -12.58382 -12.49346 -12.34252 -12.21803 -11.93922 -11.69163 -11.63519 -11.31419 -11.20434 -11.14895 -11.00704 -10.23620 -10.19475 -9.72854 -9.19472 -8.66292 -5.45866 0.34277 1.33279 1.44222 1.47052 1.54236 1.63105 1.64874 2.20000 2.49859 2.61401 2.99332 3.11712 3.21774 3.48105 3.55365 3.61804 3.72719 3.83840 3.90847 3.99405 4.08988 4.15202 4.33470 4.41417 4.46042 4.52133 4.58492 4.61182 4.63919 4.64847 4.66854 4.75501 4.83427 4.92701 4.94424 4.95712 5.00156 5.03830 5.12958 5.21578 5.29189 5.34474 5.35064 5.93908 6.25094 6.42046 6.66404 6.69506 7.11133 7.32356 8.27733 8.89802 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013288 B = 0.002662 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.600014 B =10515.144012 C =11825.334525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.186 3.814 3 N -0.519 5.519 4 C -0.047 4.047 5 C -0.036 4.036 6 C -0.050 4.050 7 C 0.512 3.488 8 O -0.584 6.584 9 N -0.712 5.712 10 C 0.124 3.876 11 C 0.061 3.939 12 H 0.105 0.895 13 C -0.139 4.139 14 C -0.128 4.128 15 C 0.090 3.910 16 C 0.113 3.887 17 N -0.659 5.659 18 C -0.283 4.283 19 H 0.050 0.950 20 C -0.088 4.088 21 N -0.973 5.973 22 Si 1.111 2.889 23 H -0.305 1.305 24 H -0.253 1.253 25 H -0.288 1.288 26 C 0.081 3.919 27 O -0.365 6.365 28 O -0.208 6.208 29 H 0.105 0.895 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.190 0.810 33 H 0.154 0.846 34 H 0.148 0.852 35 H 0.418 0.582 36 H 0.097 0.903 37 H 0.049 0.951 38 H 0.078 0.922 39 H 0.121 0.879 40 H 0.107 0.893 41 H 0.098 0.902 42 H 0.046 0.954 43 H 0.074 0.926 44 H 0.246 0.754 45 H 0.073 0.927 46 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.179 -14.070 2.288 28.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.021 4.021 3 N -0.249 5.249 4 C -0.185 4.185 5 C -0.090 4.090 6 C -0.089 4.089 7 C 0.299 3.701 8 O -0.464 6.464 9 N -0.364 5.364 10 C 0.000 4.000 11 C 0.004 3.996 12 H 0.122 0.878 13 C -0.176 4.176 14 C -0.166 4.166 15 C 0.048 3.952 16 C -0.012 4.012 17 N -0.388 5.388 18 C -0.410 4.410 19 H 0.068 0.932 20 C -0.279 4.279 21 N -0.620 5.620 22 Si 0.938 3.062 23 H -0.234 1.234 24 H -0.178 1.178 25 H -0.215 1.215 26 C -0.044 4.044 27 O -0.284 6.284 28 O -0.096 6.096 29 H 0.123 0.877 30 H 0.131 0.869 31 H 0.129 0.871 32 H 0.207 0.793 33 H 0.171 0.829 34 H 0.166 0.834 35 H 0.255 0.745 36 H 0.115 0.885 37 H 0.067 0.933 38 H 0.097 0.903 39 H 0.139 0.861 40 H 0.125 0.875 41 H 0.116 0.884 42 H 0.064 0.936 43 H 0.092 0.908 44 H 0.055 0.945 45 H 0.091 0.909 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -25.726 -11.618 3.611 28.457 hybrid contribution 1.388 -1.468 -1.800 2.706 sum -24.338 -13.086 1.811 27.692 Atomic orbital electron populations 1.20548 0.77962 1.06726 1.05997 1.27324 0.98104 0.78024 0.98628 1.70424 1.02711 1.31575 1.20234 1.23324 0.95483 0.93792 1.05900 1.22869 0.83737 0.94993 1.07357 1.20196 0.91935 1.02316 0.94457 1.20810 0.80080 0.77659 0.91565 1.90728 1.55074 1.52811 1.47775 1.45824 1.29291 1.51433 1.09830 1.21565 0.95858 0.99306 0.83250 1.23581 0.85160 0.94537 0.96311 0.87774 1.23271 0.95468 1.04159 0.94746 1.22923 0.96311 0.99546 0.97820 1.22864 0.85581 0.94178 0.92536 1.22921 0.92970 0.86497 0.98787 1.45996 1.63026 1.08336 1.21410 1.19973 1.27595 0.95609 0.97868 0.93247 1.26949 0.98369 0.94225 1.08385 1.71023 1.33842 1.42134 1.14969 0.83204 0.74444 0.75008 0.73548 1.23363 1.17824 1.21545 1.23416 0.92659 0.98437 0.89894 1.88402 1.15465 1.66594 1.57986 1.84339 1.16800 1.38272 1.70159 0.87681 0.86932 0.87072 0.79306 0.82886 0.83411 0.74549 0.88547 0.93299 0.90348 0.86075 0.87479 0.88394 0.93605 0.90831 0.94505 0.90923 0.94430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.59 10.51 71.24 0.75 0.15 16 2 C 0.19 4.17 8.34 88.34 0.74 4.91 16 3 N -0.52 -14.35 11.29 -303.83 -3.43 -17.78 16 4 C -0.05 -1.25 11.80 83.39 0.98 -0.26 16 5 C -0.04 -0.86 5.88 24.79 0.15 -0.72 16 6 C -0.05 -0.83 6.25 29.10 0.18 -0.64 16 7 C 0.51 12.11 7.82 87.66 0.69 12.80 16 8 O -0.58 -19.40 16.03 -3.05 -0.05 -19.45 16 9 N -0.71 -14.40 5.54 -463.06 -2.56 -16.96 16 10 C 0.12 2.61 5.39 86.38 0.47 3.07 16 11 C 0.06 1.17 3.48 31.28 0.11 1.28 16 12 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 13 C -0.14 -2.07 6.58 32.14 0.21 -1.86 16 14 C -0.13 -2.34 6.39 31.67 0.20 -2.14 16 15 C 0.09 2.75 1.75 -10.67 -0.02 2.73 16 16 C 0.11 4.14 8.20 83.38 0.68 4.82 16 17 N -0.66 -32.45 3.70 -738.96 -2.73 -35.18 16 18 C -0.28 -17.00 11.08 84.03 0.93 -16.07 16 19 H 0.05 3.19 8.05 -2.91 -0.02 3.17 16 20 C -0.09 -5.46 5.50 84.86 0.47 -5.00 16 21 N -0.97 -64.95 13.70 21.65 0.30 -64.66 16 22 Si 1.11 56.51 25.13 68.60 1.72 58.24 16 23 H -0.31 -15.85 7.11 99.48 0.71 -15.15 16 24 H -0.25 -11.27 6.11 99.48 0.61 -10.66 16 25 H -0.29 -14.20 6.64 99.48 0.66 -13.54 16 26 C 0.08 3.25 5.19 83.48 0.43 3.68 16 27 O -0.37 -11.29 10.84 -148.98 -1.62 -12.90 16 28 O -0.21 -5.03 10.77 -3.66 -0.04 -5.07 16 29 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.19 4.39 8.06 -2.91 -0.02 4.37 16 33 H 0.15 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.15 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.42 6.70 8.47 -92.71 -0.79 5.92 16 36 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 38 H 0.08 1.28 8.05 -2.39 -0.02 1.26 16 39 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.11 1.46 8.13 -2.38 -0.02 1.44 16 41 H 0.10 1.63 7.81 -2.39 -0.02 1.61 16 42 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.07 2.34 8.13 -2.39 -0.02 2.32 16 44 H 0.25 16.40 8.73 -92.71 -0.81 15.59 16 45 H 0.07 2.66 7.50 -2.39 -0.02 2.65 16 46 H 0.04 1.66 4.70 -2.39 -0.01 1.65 16 Total: -1.00 -92.19 380.09 -1.41 -93.60 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: 0.03 Total: 13.40 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: 6.97 Total: 6.75 kcal Atomic # 7 Polarization: -126.15 SS G_CDS: -8.43 Total: -134.58 kcal Atomic # 8 Polarization: -35.71 SS G_CDS: -1.70 Total: -37.42 kcal Atomic # 14 Polarization: 56.51 SS G_CDS: 1.72 Total: 58.24 kcal Total: -92.19 -1.41 -93.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733792710.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.490 kcal (2) G-P(sol) polarization free energy of solvation -92.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds