Wall clock time and date at job start Tue Mar 31 2020 20:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.47095 * 2 1 4 4 C 1.38356 * 120.27126 * 90.00108 * 3 2 1 5 5 N 1.31878 * 121.18210 * 180.28127 * 4 3 2 6 6 C 1.32238 * 121.80183 * 359.46887 * 5 4 3 7 7 O 1.35428 * 119.79780 * 180.24818 * 6 5 4 8 8 C 1.40272 * 120.39936 * 0.52491 * 6 5 4 9 9 C 1.47530 * 120.59843 * 179.72132 * 8 6 5 10 10 O 1.21590 * 119.99607 * 0.02562 * 9 8 6 11 11 N 1.34771 * 119.99918 * 180.02562 * 9 8 6 12 12 C 1.46509 * 119.99800 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.47167 * 180.02562 * 12 11 9 14 14 O 1.42902 * 110.63962 * 66.68820 * 13 12 11 15 15 C 1.55148 * 110.72192 * 190.02306 * 13 12 11 16 16 C 1.54908 * 101.58433 * 153.86675 * 15 13 12 17 17 N 1.47427 * 104.83322 * 322.99158 * 16 15 13 18 18 C 1.36936 * 125.65105 * 204.16479 * 17 16 15 19 19 H 1.07997 * 119.99991 * 179.97438 * 18 17 16 20 20 C 1.38806 * 119.99724 * 359.95672 * 18 17 16 21 21 N 1.31618 * 120.00541 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 119.99857 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.46875 * 89.99815 * 22 20 18 24 24 H 1.48494 * 109.47303 * 209.99900 * 22 20 18 25 25 H 1.48500 * 109.46983 * 330.00134 * 22 20 18 26 26 C 1.47028 * 108.69844 * 24.12571 * 17 16 15 27 27 C 1.38333 * 120.26823 * 270.02365 * 3 2 1 28 28 H 1.08997 * 109.47615 * 60.00273 * 1 2 3 29 29 H 1.09001 * 109.47440 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47167 * 299.99936 * 1 2 3 31 31 H 1.08996 * 109.47179 * 239.99596 * 2 1 3 32 32 H 1.09000 * 109.46786 * 120.00089 * 2 1 3 33 33 H 1.08002 * 119.40526 * 359.97438 * 4 3 2 34 34 H 0.96698 * 114.00026 * 270.26935 * 7 6 5 35 35 H 0.97005 * 120.00508 * 0.02562 * 11 9 8 36 36 H 1.08998 * 109.46907 * 299.99882 * 12 11 9 37 37 H 1.09000 * 109.46688 * 60.00084 * 12 11 9 38 38 H 0.96707 * 114.00231 * 300.69935 * 14 13 12 39 39 H 1.08999 * 111.00864 * 271.94279 * 15 13 12 40 40 H 1.09001 * 111.00629 * 35.79188 * 15 13 12 41 41 H 1.09001 * 110.37133 * 204.15230 * 16 15 13 42 42 H 1.09001 * 110.36812 * 81.82748 * 16 15 13 43 43 H 0.96998 * 120.00601 * 180.02562 * 21 20 18 44 44 H 1.08997 * 109.88207 * 239.52244 * 26 17 16 45 45 H 1.09005 * 109.87656 * 118.35823 * 26 17 16 46 46 H 1.08001 * 120.82862 * 359.95439 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2648 2.0784 1.1949 5 7 2.6991 3.3234 1.2159 6 6 2.9417 3.9957 0.1033 7 8 3.3917 5.2712 0.1722 8 6 2.7303 3.3976 -1.1478 9 6 2.9936 4.1456 -2.3919 10 8 3.3982 5.2910 -2.3384 11 7 2.7858 3.5594 -3.5875 12 6 3.0479 4.3021 -4.8229 13 6 2.7327 3.4142 -6.0283 14 8 1.3323 3.1386 -6.0985 15 6 3.2329 4.0728 -7.3410 16 6 3.4569 2.8346 -8.2446 17 7 3.9797 1.7958 -7.3385 18 6 4.7443 0.7227 -7.7113 19 1 5.0798 0.0145 -6.9682 20 6 5.0880 0.5452 -9.0444 21 7 4.6794 1.4085 -9.9500 22 14 6.1306 -0.9190 -9.5532 23 1 5.2461 -2.0645 -9.8863 24 1 6.9431 -0.5586 -10.7427 25 1 7.0312 -1.2978 -8.4348 26 6 3.5447 2.1033 -5.9681 27 6 2.2643 2.0784 -1.1947 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 2.0827 1.5644 2.1272 34 1 2.6893 5.9355 0.1924 35 1 2.4627 2.6457 -3.6301 36 1 2.4183 5.1914 -4.8527 37 1 4.0965 4.5979 -4.8533 38 1 0.9798 2.6911 -5.3170 39 1 2.4731 4.7313 -7.7619 40 1 4.1666 4.6108 -7.1771 41 1 4.1852 3.0601 -9.0235 42 1 2.5143 2.5125 -8.6872 43 1 4.9192 1.2842 -10.8816 44 1 4.4142 2.2350 -5.3240 45 1 2.9183 1.2962 -5.5882 46 1 2.0906 1.5861 -2.1402 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754760345.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:48 Heat of formation + Delta-G solvation = -62.018121 kcal Electronic energy + Delta-G solvation = -29201.459280 eV Core-core repulsion = 25092.316238 eV Total energy + Delta-G solvation = -4109.143042 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.22072 -39.61421 -38.40328 -37.56679 -35.19098 -34.63982 -34.33290 -32.76086 -32.04079 -29.69634 -29.44759 -28.20651 -25.97071 -24.98344 -24.41158 -23.62736 -22.15203 -20.89895 -20.06978 -19.96983 -19.16027 -18.01665 -17.56233 -16.98020 -16.48986 -16.06896 -15.63278 -15.40615 -14.91543 -14.78241 -14.67279 -14.34701 -14.20441 -14.07223 -13.85184 -13.51848 -13.27811 -13.06360 -12.96449 -12.60118 -12.30922 -12.15078 -12.12774 -11.78814 -11.63596 -11.45236 -11.08663 -10.92063 -10.83667 -10.46335 -10.33067 -10.27181 -10.18797 -10.02650 -9.76573 -9.66917 -9.46002 -9.25559 -9.06213 -8.69878 -6.91344 -5.70936 -3.13712 0.23365 0.68890 2.62171 2.90110 3.21500 3.36258 3.41058 3.43379 3.48608 4.10819 4.23111 4.33267 4.40062 4.40504 4.41814 4.67288 4.82470 4.86938 4.90376 5.05995 5.12138 5.24296 5.32197 5.35062 5.42402 5.44462 5.52848 5.57633 5.76839 5.79666 5.82762 5.91532 6.02600 6.17476 6.22738 6.33365 6.43913 6.53323 6.56566 7.19756 7.29872 7.49577 7.51022 7.55751 7.79155 7.85849 8.03287 8.29432 9.15219 9.75662 10.39608 11.32747 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012914 B = 0.002907 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.678077 B = 9630.778080 C =10689.699764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.081 4.081 3 C -0.151 4.151 4 C 0.149 3.851 5 N -0.505 5.505 6 C 0.364 3.636 7 O -0.459 6.459 8 C -0.198 4.198 9 C 0.562 3.438 10 O -0.518 6.518 11 N -0.722 5.722 12 C 0.105 3.895 13 C 0.104 3.896 14 O -0.542 6.542 15 C -0.128 4.128 16 C 0.156 3.844 17 N -0.599 5.599 18 C -0.227 4.227 19 H 0.077 0.923 20 C -0.009 4.009 21 N -0.920 5.920 22 Si 0.915 3.085 23 H -0.288 1.288 24 H -0.289 1.289 25 H -0.281 1.281 26 C 0.116 3.884 27 C -0.027 4.027 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.164 0.836 34 H 0.405 0.595 35 H 0.397 0.603 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.363 0.637 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.109 0.891 42 H 0.018 0.982 43 H 0.253 0.747 44 H 0.031 0.969 45 H 0.021 0.979 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.773 1.058 20.498 22.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.119 4.119 3 C -0.153 4.153 4 C -0.008 4.008 5 N -0.223 5.223 6 C 0.184 3.816 7 O -0.267 6.267 8 C -0.205 4.205 9 C 0.348 3.652 10 O -0.394 6.394 11 N -0.375 5.375 12 C -0.018 4.018 13 C 0.063 3.937 14 O -0.346 6.346 15 C -0.167 4.167 16 C 0.031 3.969 17 N -0.325 5.325 18 C -0.355 4.355 19 H 0.095 0.905 20 C -0.204 4.204 21 N -0.568 5.568 22 Si 0.746 3.254 23 H -0.216 1.216 24 H -0.216 1.216 25 H -0.207 1.207 26 C -0.011 4.011 27 C -0.053 4.053 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.181 0.819 34 H 0.264 0.736 35 H 0.232 0.768 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.209 0.791 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.126 0.874 42 H 0.037 0.963 43 H 0.064 0.936 44 H 0.049 0.951 45 H 0.039 0.961 46 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -8.589 2.349 20.480 22.332 hybrid contribution -0.250 -1.725 -0.458 1.802 sum -8.839 0.625 20.022 21.895 Atomic orbital electron populations 1.21785 0.94244 1.02307 1.02348 1.20502 0.96448 0.90983 1.03922 1.20878 1.02355 0.98537 0.93561 1.22662 0.91541 0.88726 0.97920 1.67349 1.13736 1.09848 1.31374 1.19172 0.88967 0.87182 0.86264 1.84735 1.35028 1.11603 1.95303 1.21156 1.07728 0.96733 0.94852 1.17785 0.78270 0.86370 0.82821 1.90825 1.44466 1.17138 1.86990 1.45918 1.68248 1.17559 1.05769 1.22143 1.02607 0.95271 0.81824 1.22577 0.81285 0.95011 0.94829 1.86641 1.22361 1.81082 1.44556 1.23058 0.99749 1.00101 0.93766 1.21950 0.98716 0.83682 0.92522 1.44408 1.59832 1.27671 1.00617 1.19045 1.23608 1.00378 0.92507 0.90538 1.24797 1.00890 0.99081 0.95666 1.69784 1.49674 1.36227 1.01091 0.86064 0.79694 0.81689 0.77975 1.21571 1.21550 1.20677 1.21917 0.95702 0.93170 0.90293 1.21665 0.92466 0.92100 0.99100 0.92348 0.91858 0.92487 0.90162 0.90248 0.81867 0.73584 0.76828 0.90435 0.90010 0.79088 0.90992 0.90498 0.87380 0.96346 0.93588 0.95141 0.96087 0.83964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.89 37.16 0.37 -0.34 16 2 C -0.08 -0.41 6.08 -27.88 -0.17 -0.58 16 3 C -0.15 -1.12 5.14 -104.54 -0.54 -1.65 16 4 C 0.15 1.22 10.84 -17.49 -0.19 1.03 16 5 N -0.50 -5.64 10.37 -12.98 -0.13 -5.77 16 6 C 0.36 4.41 7.77 -16.61 -0.13 4.28 16 7 O -0.46 -5.71 11.66 -39.75 -0.46 -6.18 16 8 C -0.20 -2.25 5.90 -104.69 -0.62 -2.87 16 9 C 0.56 7.55 7.77 -12.47 -0.10 7.45 16 10 O -0.52 -8.60 15.19 -16.48 -0.25 -8.85 16 11 N -0.72 -8.73 5.09 -61.35 -0.31 -9.04 16 12 C 0.11 1.49 4.80 -4.04 -0.02 1.47 16 13 C 0.10 1.72 0.93 -88.79 -0.08 1.64 16 14 O -0.54 -8.58 13.10 -35.23 -0.46 -9.04 16 15 C -0.13 -2.39 6.26 -24.59 -0.15 -2.55 16 16 C 0.16 3.76 5.88 -2.53 -0.01 3.75 16 17 N -0.60 -14.99 3.39 -170.07 -0.58 -15.56 16 18 C -0.23 -6.22 10.27 -15.06 -0.15 -6.37 16 19 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 20 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 21 N -0.92 -26.49 10.09 55.49 0.56 -25.93 16 22 Si 0.92 21.73 29.55 -169.99 -5.02 16.71 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 C 0.12 2.25 5.76 -3.06 -0.02 2.24 16 27 C -0.03 -0.23 9.31 -38.89 -0.36 -0.60 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.08 0.40 8.09 -51.93 -0.42 -0.02 16 32 H 0.08 0.31 8.09 -51.93 -0.42 -0.11 16 33 H 0.16 0.83 8.06 -52.49 -0.42 0.41 16 34 H 0.40 3.28 9.06 45.56 0.41 3.69 16 35 H 0.40 3.91 5.57 -40.82 -0.23 3.69 16 36 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.08 1.26 8.03 -51.93 -0.42 0.84 16 38 H 0.36 4.13 8.44 45.56 0.38 4.52 16 39 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.08 1.37 7.96 -51.93 -0.41 0.96 16 41 H 0.11 2.91 5.87 -51.93 -0.30 2.61 16 42 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 44 H 0.03 0.60 7.82 -51.93 -0.41 0.19 16 45 H 0.02 0.39 8.07 -51.93 -0.42 -0.03 16 46 H 0.14 0.92 6.52 -52.49 -0.34 0.58 16 LS Contribution 378.45 15.07 5.70 5.70 Total: -1.00 -35.36 378.45 -8.31 -43.67 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -5.08 Total: 7.73 kcal Atomic # 6 Polarization: 8.84 SS G_CDS: -2.27 Total: 6.57 kcal Atomic # 7 Polarization: -55.85 SS G_CDS: -0.46 Total: -56.31 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: -1.18 Total: -24.06 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.36 -8.31 -43.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754760345.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.350 kcal (2) G-P(sol) polarization free energy of solvation -35.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds