Wall clock time and date at job start Tue Mar 31 2020 20:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.47095 * 2 1 4 4 C 1.38356 * 120.27126 * 90.00108 * 3 2 1 5 5 N 1.31878 * 121.18210 * 180.28127 * 4 3 2 6 6 C 1.32238 * 121.80183 * 359.46887 * 5 4 3 7 7 O 1.35428 * 119.79780 * 180.24818 * 6 5 4 8 8 C 1.40272 * 120.39936 * 0.52491 * 6 5 4 9 9 C 1.47530 * 120.59843 * 179.72132 * 8 6 5 10 10 O 1.21590 * 119.99607 * 0.02562 * 9 8 6 11 11 N 1.34771 * 119.99918 * 180.02562 * 9 8 6 12 12 C 1.46509 * 119.99800 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.47167 * 180.02562 * 12 11 9 14 14 O 1.42902 * 110.63962 * 66.68820 * 13 12 11 15 15 C 1.55148 * 110.72192 * 190.02306 * 13 12 11 16 16 C 1.54908 * 101.58433 * 153.86675 * 15 13 12 17 17 N 1.47427 * 104.83322 * 322.99158 * 16 15 13 18 18 C 1.36936 * 125.65105 * 204.16479 * 17 16 15 19 19 H 1.07997 * 119.99991 * 179.97438 * 18 17 16 20 20 C 1.38806 * 119.99724 * 359.95672 * 18 17 16 21 21 N 1.31618 * 120.00541 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 119.99857 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.46875 * 89.99815 * 22 20 18 24 24 H 1.48494 * 109.47303 * 209.99900 * 22 20 18 25 25 H 1.48500 * 109.46983 * 330.00134 * 22 20 18 26 26 C 1.47028 * 108.69844 * 24.12571 * 17 16 15 27 27 C 1.38333 * 120.26823 * 270.02365 * 3 2 1 28 28 H 1.08997 * 109.47615 * 60.00273 * 1 2 3 29 29 H 1.09001 * 109.47440 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47167 * 299.99936 * 1 2 3 31 31 H 1.08996 * 109.47179 * 239.99596 * 2 1 3 32 32 H 1.09000 * 109.46786 * 120.00089 * 2 1 3 33 33 H 1.08002 * 119.40526 * 359.97438 * 4 3 2 34 34 H 0.96698 * 114.00026 * 270.26935 * 7 6 5 35 35 H 0.97005 * 120.00508 * 0.02562 * 11 9 8 36 36 H 1.08998 * 109.46907 * 299.99882 * 12 11 9 37 37 H 1.09000 * 109.46688 * 60.00084 * 12 11 9 38 38 H 0.96707 * 114.00231 * 300.69935 * 14 13 12 39 39 H 1.08999 * 111.00864 * 271.94279 * 15 13 12 40 40 H 1.09001 * 111.00629 * 35.79188 * 15 13 12 41 41 H 1.09001 * 110.37133 * 204.15230 * 16 15 13 42 42 H 1.09001 * 110.36812 * 81.82748 * 16 15 13 43 43 H 0.96998 * 120.00601 * 180.02562 * 21 20 18 44 44 H 1.08997 * 109.88207 * 239.52244 * 26 17 16 45 45 H 1.09005 * 109.87656 * 118.35823 * 26 17 16 46 46 H 1.08001 * 120.82862 * 359.95439 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2648 2.0784 1.1949 5 7 2.6991 3.3234 1.2159 6 6 2.9417 3.9957 0.1033 7 8 3.3917 5.2712 0.1722 8 6 2.7303 3.3976 -1.1478 9 6 2.9936 4.1456 -2.3919 10 8 3.3982 5.2910 -2.3384 11 7 2.7858 3.5594 -3.5875 12 6 3.0479 4.3021 -4.8229 13 6 2.7327 3.4142 -6.0283 14 8 1.3323 3.1386 -6.0985 15 6 3.2329 4.0728 -7.3410 16 6 3.4569 2.8346 -8.2446 17 7 3.9797 1.7958 -7.3385 18 6 4.7443 0.7227 -7.7113 19 1 5.0798 0.0145 -6.9682 20 6 5.0880 0.5452 -9.0444 21 7 4.6794 1.4085 -9.9500 22 14 6.1306 -0.9190 -9.5532 23 1 5.2461 -2.0645 -9.8863 24 1 6.9431 -0.5586 -10.7427 25 1 7.0312 -1.2978 -8.4348 26 6 3.5447 2.1033 -5.9681 27 6 2.2643 2.0784 -1.1947 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 2.0827 1.5644 2.1272 34 1 2.6893 5.9355 0.1924 35 1 2.4627 2.6457 -3.6301 36 1 2.4183 5.1914 -4.8527 37 1 4.0965 4.5979 -4.8533 38 1 0.9798 2.6911 -5.3170 39 1 2.4731 4.7313 -7.7619 40 1 4.1666 4.6108 -7.1771 41 1 4.1852 3.0601 -9.0235 42 1 2.5143 2.5125 -8.6872 43 1 4.9192 1.2842 -10.8816 44 1 4.4142 2.2350 -5.3240 45 1 2.9183 1.2962 -5.5882 46 1 2.0906 1.5861 -2.1402 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754760345.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:47 Heat of formation + Delta-G solvation = -91.289196 kcal Electronic energy + Delta-G solvation = -29202.728569 eV Core-core repulsion = 25092.316238 eV Total energy + Delta-G solvation = -4110.412331 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.03642 -40.76856 -39.66477 -38.38101 -36.81310 -35.48792 -35.18778 -34.05315 -33.40562 -31.34735 -30.13699 -29.63966 -27.57286 -26.07910 -25.10982 -24.88964 -22.99394 -22.25822 -21.42335 -21.32978 -19.98343 -19.07762 -18.83177 -18.31722 -17.58689 -17.07532 -16.75975 -16.66300 -16.45877 -15.81651 -15.65030 -15.50225 -15.39515 -14.94216 -14.79678 -14.67493 -14.52512 -14.17692 -13.88496 -13.73509 -13.64839 -13.30022 -13.11172 -12.93134 -12.81438 -12.77411 -12.38844 -12.34461 -12.09966 -12.01958 -11.83814 -11.78488 -11.62604 -11.24803 -11.02743 -10.95563 -10.74601 -10.47383 -10.28234 -9.80873 -8.91361 -7.78069 -5.23190 -0.52468 0.00279 1.47297 1.48950 1.57626 1.71791 1.89806 2.46669 2.48649 2.71625 3.14107 3.31082 3.35632 3.43735 3.63601 3.67607 3.68676 3.80838 3.90913 3.93866 4.12564 4.27114 4.46394 4.49976 4.54139 4.59572 4.65148 4.68182 4.77440 4.82883 4.92596 4.93427 4.98132 5.05917 5.19714 5.21123 5.33805 5.37825 5.45995 5.50448 5.60774 5.79141 6.28235 6.30139 6.52003 6.77779 6.78150 7.03681 7.08816 7.76014 8.39469 9.23957 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012914 B = 0.002907 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.678077 B = 9630.778080 C =10689.699764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.078 4.078 3 C -0.141 4.141 4 C 0.151 3.849 5 N -0.527 5.527 6 C 0.345 3.655 7 O -0.480 6.480 8 C -0.213 4.213 9 C 0.563 3.437 10 O -0.556 6.556 11 N -0.711 5.711 12 C 0.120 3.880 13 C 0.126 3.874 14 O -0.552 6.552 15 C -0.121 4.121 16 C 0.160 3.840 17 N -0.622 5.622 18 C -0.240 4.240 19 H 0.084 0.916 20 C -0.067 4.067 21 N -0.949 5.949 22 Si 0.980 3.020 23 H -0.286 1.286 24 H -0.295 1.295 25 H -0.268 1.268 26 C 0.112 3.888 27 C -0.024 4.024 28 H 0.052 0.948 29 H 0.071 0.929 30 H 0.058 0.942 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.196 0.804 34 H 0.416 0.584 35 H 0.409 0.591 36 H 0.084 0.916 37 H 0.071 0.929 38 H 0.385 0.615 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.074 0.926 42 H -0.014 1.014 43 H 0.247 0.753 44 H 0.035 0.965 45 H 0.039 0.961 46 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.581 -0.636 22.570 24.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.116 4.116 3 C -0.143 4.143 4 C -0.007 4.007 5 N -0.245 5.245 6 C 0.166 3.834 7 O -0.290 6.290 8 C -0.220 4.220 9 C 0.351 3.649 10 O -0.435 6.435 11 N -0.364 5.364 12 C -0.005 4.005 13 C 0.084 3.916 14 O -0.360 6.360 15 C -0.160 4.160 16 C 0.035 3.965 17 N -0.349 5.349 18 C -0.369 4.369 19 H 0.102 0.898 20 C -0.259 4.259 21 N -0.599 5.599 22 Si 0.808 3.192 23 H -0.213 1.213 24 H -0.221 1.221 25 H -0.193 1.193 26 C -0.013 4.013 27 C -0.050 4.050 28 H 0.071 0.929 29 H 0.090 0.910 30 H 0.077 0.923 31 H 0.103 0.897 32 H 0.115 0.885 33 H 0.212 0.788 34 H 0.278 0.722 35 H 0.246 0.754 36 H 0.102 0.898 37 H 0.089 0.911 38 H 0.234 0.766 39 H 0.105 0.895 40 H 0.104 0.896 41 H 0.092 0.908 42 H 0.004 0.996 43 H 0.057 0.943 44 H 0.053 0.947 45 H 0.057 0.943 46 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -9.432 0.628 22.600 24.497 hybrid contribution -0.078 -1.269 -1.009 1.623 sum -9.510 -0.640 21.591 23.601 Atomic orbital electron populations 1.21787 0.93855 1.02818 1.02210 1.20575 0.96607 0.89303 1.05076 1.21155 1.00925 0.99471 0.92769 1.23280 0.89935 0.87825 0.99656 1.67382 1.14756 1.11239 1.31162 1.19350 0.89927 0.87185 0.86951 1.84680 1.36390 1.12495 1.95429 1.20986 1.09721 0.97845 0.93447 1.18078 0.77363 0.85992 0.83506 1.90804 1.46291 1.18850 1.87519 1.45725 1.67927 1.17959 1.04815 1.21833 1.02094 0.94985 0.81554 1.22185 0.81411 0.93488 0.94492 1.86608 1.21535 1.81465 1.46343 1.22910 1.00984 0.98069 0.94022 1.21651 0.95955 0.85868 0.93033 1.44692 1.59823 1.27393 1.02960 1.19457 1.23470 1.01090 0.92865 0.89820 1.25647 1.02552 1.01834 0.95901 1.70045 1.51012 1.37871 1.00923 0.85051 0.78124 0.78493 0.77483 1.21317 1.22147 1.19289 1.22131 0.96450 0.95156 0.87612 1.21940 0.91424 0.90983 1.00670 0.92907 0.91049 0.92284 0.89668 0.88539 0.78767 0.72245 0.75354 0.89786 0.91077 0.76567 0.89481 0.89620 0.90783 0.99604 0.94306 0.94697 0.94306 0.81831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.89 71.98 0.71 -0.21 16 2 C -0.08 -0.50 6.08 29.85 0.18 -0.32 16 3 C -0.14 -1.66 5.14 -19.81 -0.10 -1.76 16 4 C 0.15 2.06 10.84 84.71 0.92 2.98 16 5 N -0.53 -11.11 10.37 -308.00 -3.19 -14.30 16 6 C 0.35 8.19 7.77 85.13 0.66 8.86 16 7 O -0.48 -12.18 11.66 -66.42 -0.77 -12.95 16 8 C -0.21 -4.58 5.90 -19.91 -0.12 -4.70 16 9 C 0.56 14.53 7.77 86.69 0.67 15.21 16 10 O -0.56 -18.36 15.19 16.82 0.26 -18.11 16 11 N -0.71 -15.71 5.09 -466.27 -2.37 -18.08 16 12 C 0.12 3.18 4.80 86.38 0.41 3.59 16 13 C 0.13 3.93 0.93 -9.61 -0.01 3.92 16 14 O -0.55 -16.15 13.10 -148.98 -1.95 -18.10 16 15 C -0.12 -4.46 6.26 31.98 0.20 -4.26 16 16 C 0.16 7.90 5.88 86.85 0.51 8.41 16 17 N -0.62 -31.15 3.39 -691.98 -2.35 -33.50 16 18 C -0.24 -13.13 10.27 84.03 0.86 -12.27 16 19 H 0.08 4.33 7.83 -2.91 -0.02 4.30 16 20 C -0.07 -3.74 5.49 84.86 0.47 -3.27 16 21 N -0.95 -56.29 10.09 21.65 0.22 -56.08 16 22 Si 0.98 44.92 29.55 68.60 2.03 46.95 16 23 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 24 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 25 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 26 C 0.11 4.17 5.76 86.73 0.50 4.67 16 27 C -0.02 -0.36 9.31 22.72 0.21 -0.14 16 28 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.08 0.53 8.09 -2.39 -0.02 0.51 16 32 H 0.10 0.35 8.09 -2.39 -0.02 0.33 16 33 H 0.20 1.28 8.06 -2.91 -0.02 1.26 16 34 H 0.42 7.12 9.06 -74.06 -0.67 6.44 16 35 H 0.41 6.87 5.57 -92.70 -0.52 6.35 16 36 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.07 2.10 8.03 -2.39 -0.02 2.08 16 38 H 0.39 7.49 8.44 -74.05 -0.62 6.86 16 39 H 0.09 2.94 8.14 -2.39 -0.02 2.92 16 40 H 0.09 3.00 7.96 -2.39 -0.02 2.98 16 41 H 0.07 4.17 5.87 -2.39 -0.01 4.15 16 42 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 43 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 44 H 0.04 1.29 7.82 -2.39 -0.02 1.27 16 45 H 0.04 1.33 8.07 -2.38 -0.02 1.31 16 46 H 0.16 1.55 6.52 -2.91 -0.02 1.53 16 Total: -1.00 -78.45 378.45 -2.83 -81.27 By element: Atomic # 1 Polarization: 22.97 SS G_CDS: -0.77 Total: 22.20 kcal Atomic # 6 Polarization: 14.61 SS G_CDS: 6.08 Total: 20.70 kcal Atomic # 7 Polarization: -114.26 SS G_CDS: -7.70 Total: -121.96 kcal Atomic # 8 Polarization: -46.69 SS G_CDS: -2.47 Total: -49.16 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -78.45 -2.83 -81.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754760345.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.015 kcal (2) G-P(sol) polarization free energy of solvation -78.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds