Wall clock time and date at job start Tue Mar 31 2020 22:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47610 * 2 1 4 4 C 1.50697 * 109.47284 * 180.02562 * 3 2 1 5 5 C 1.36243 * 126.50892 * 270.04289 * 4 3 2 6 6 C 1.46842 * 125.79961 * 359.97438 * 5 4 3 7 7 O 1.21674 * 120.00353 * 359.97438 * 6 5 4 8 8 N 1.34775 * 119.99865 * 180.02562 * 6 5 4 9 9 C 1.46504 * 119.99801 * 179.97438 * 8 6 5 10 10 C 1.50700 * 109.46831 * 179.97438 * 9 8 6 11 11 O 1.21294 * 120.00190 * 0.02562 * 10 9 8 12 12 N 1.34782 * 119.99889 * 179.97438 * 10 9 8 13 13 C 1.37096 * 119.99830 * 180.02562 * 12 10 9 14 14 H 1.07997 * 120.00114 * 0.02562 * 13 12 10 15 15 C 1.38955 * 119.99732 * 180.02562 * 13 12 10 16 16 N 1.31402 * 119.99956 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99824 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47262 * 89.99906 * 17 15 13 19 19 H 1.48499 * 109.47252 * 210.00033 * 17 15 13 20 20 H 1.48499 * 109.47292 * 329.99681 * 17 15 13 21 21 N 1.37839 * 108.39737 * 179.70929 * 5 4 3 22 22 H 0.96999 * 125.34855 * 180.30641 * 21 5 4 23 23 C 1.34114 * 109.30251 * 0.42646 * 21 5 4 24 24 C 1.50703 * 125.82091 * 179.83189 * 23 21 5 25 25 C 1.38611 * 108.34872 * 359.57742 * 23 21 5 26 26 C 1.46614 * 126.51789 * 180.26412 * 25 23 21 27 27 C 1.50700 * 119.99815 * 274.38285 * 26 25 23 28 28 O 1.21320 * 120.00257 * 94.38257 * 26 25 23 29 29 H 1.09004 * 109.47053 * 59.99729 * 1 2 3 30 30 H 1.09001 * 109.47781 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46835 * 300.00367 * 1 2 3 32 32 H 1.09005 * 109.46988 * 240.00157 * 2 1 3 33 33 H 1.09004 * 109.47053 * 120.00271 * 2 1 3 34 34 H 1.08997 * 109.46841 * 59.99773 * 3 2 1 35 35 H 1.08998 * 109.46703 * 300.00234 * 3 2 1 36 36 H 0.96993 * 120.00304 * 359.97438 * 8 6 5 37 37 H 1.08989 * 109.47417 * 299.99637 * 9 8 6 38 38 H 1.09000 * 109.47076 * 60.00370 * 9 8 6 39 39 H 0.97002 * 119.99880 * 0.02562 * 12 10 9 40 40 H 0.97006 * 119.99963 * 180.02562 * 16 15 13 41 41 H 1.09003 * 109.47225 * 264.37768 * 24 23 21 42 42 H 1.09005 * 109.46237 * 144.38059 * 24 23 21 43 43 H 1.08991 * 109.47436 * 24.38156 * 24 23 21 44 44 H 1.08997 * 109.47420 * 4.99400 * 27 26 25 45 45 H 1.09009 * 109.47224 * 124.99254 * 27 26 25 46 46 H 1.09004 * 109.47619 * 244.99386 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5471 1.4424 -0.0006 5 6 4.3581 1.4414 1.0941 6 6 3.9124 1.4407 2.4933 7 8 2.7238 1.4415 2.7532 8 7 4.8201 1.4402 3.4896 9 6 4.3754 1.4401 4.8855 10 6 5.5768 1.4389 5.7953 11 8 6.6945 1.4387 5.3241 12 7 5.4094 1.4391 7.1327 13 6 6.5023 1.4385 7.9603 14 1 7.4974 1.4383 7.5407 15 6 6.3296 1.4382 9.3391 16 7 5.1188 1.4379 9.8496 17 14 7.8188 1.4381 10.4668 18 1 8.2132 2.8382 10.7660 19 1 7.4815 0.7378 11.7321 20 1 8.9455 0.7384 9.7990 21 7 5.6680 1.4350 0.6651 22 1 6.4475 1.4288 1.2422 23 6 5.6953 1.4415 -0.6758 24 6 6.9350 1.4413 -1.5327 25 6 4.3889 1.4425 -1.1389 26 6 3.9602 1.4434 -2.5410 27 6 3.8361 2.7452 -3.2901 28 8 3.7054 0.3963 -3.0981 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3635 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.6767 1.9563 -0.8900 36 1 5.7676 1.4399 3.2824 37 1 3.7760 2.3301 5.0760 38 1 3.7753 0.5502 5.0756 39 1 4.5155 1.4396 7.5095 40 1 4.9983 1.4380 10.8121 41 1 7.1803 2.4646 -1.8171 42 1 6.7567 0.8478 -2.4294 43 1 7.7646 1.0115 -0.9715 44 1 4.1884 3.5619 -2.6601 45 1 4.4380 2.7008 -4.1978 46 1 2.7922 2.9144 -3.5542 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343548036.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:38 Heat of formation + Delta-G solvation = -91.779601 kcal Electronic energy + Delta-G solvation = -28479.289844 eV Core-core repulsion = 24368.856248 eV Total energy + Delta-G solvation = -4110.433596 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.87208 -39.43247 -38.84451 -38.06944 -35.40835 -34.47887 -33.76182 -32.19310 -31.74143 -31.45703 -29.95090 -28.40626 -27.33003 -26.09999 -24.54372 -22.82300 -21.95410 -21.06757 -19.83336 -19.34642 -18.81873 -18.46018 -17.99901 -16.18381 -15.78699 -15.76547 -15.63311 -15.25715 -15.17319 -14.85387 -14.66068 -14.61730 -14.41784 -13.99944 -13.92293 -13.81521 -13.40461 -13.25429 -13.15096 -12.71968 -12.59901 -12.50254 -12.30585 -12.26292 -12.00063 -11.79815 -11.70019 -11.24361 -11.18442 -11.18020 -10.60155 -10.51836 -10.38574 -10.06209 -9.80815 -9.71248 -9.01971 -8.93342 -8.73765 -8.23397 -8.17875 -6.58533 -4.00934 1.35066 1.71021 2.16080 2.79820 3.06069 3.15657 3.19049 3.25427 3.36435 3.65529 4.03363 4.07621 4.41182 4.70071 4.77287 4.82230 4.89184 4.98975 5.06826 5.10001 5.12722 5.14180 5.19687 5.29851 5.42787 5.48317 5.49062 5.66628 5.72237 5.80497 5.86602 5.89438 5.90605 5.96448 5.98589 6.11354 6.33971 6.38852 6.44289 6.54947 6.67397 7.10220 7.33010 7.39017 7.64956 7.83844 8.26325 8.36945 8.96852 9.30866 9.78090 10.58128 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018425 B = 0.002339 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.340047 B =11968.696687 C =13199.214472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.113 4.113 3 C -0.059 4.059 4 C -0.032 4.032 5 C -0.047 4.047 6 C 0.585 3.415 7 O -0.528 6.528 8 N -0.708 5.708 9 C 0.111 3.889 10 C 0.426 3.574 11 O -0.601 6.601 12 N -0.546 5.546 13 C -0.307 4.307 14 H 0.105 0.895 15 C 0.027 3.973 16 N -0.892 5.892 17 Si 0.934 3.066 18 H -0.276 1.276 19 H -0.282 1.282 20 H -0.269 1.269 21 N -0.522 5.522 22 H 0.422 0.578 23 C 0.094 3.906 24 C -0.096 4.096 25 C -0.259 4.259 26 C 0.440 3.560 27 C -0.197 4.197 28 O -0.454 6.454 29 H 0.049 0.951 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.094 0.906 35 H 0.062 0.938 36 H 0.404 0.596 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.397 0.603 40 H 0.275 0.725 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.075 0.925 44 H 0.083 0.917 45 H 0.090 0.910 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.514 2.519 -22.225 22.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.150 4.150 3 C -0.097 4.097 4 C -0.039 4.039 5 C -0.159 4.159 6 C 0.372 3.628 7 O -0.405 6.405 8 N -0.361 5.361 9 C -0.017 4.017 10 C 0.212 3.788 11 O -0.489 6.489 12 N -0.180 5.180 13 C -0.436 4.436 14 H 0.123 0.877 15 C -0.177 4.177 16 N -0.532 5.532 17 Si 0.760 3.240 18 H -0.202 1.202 19 H -0.207 1.207 20 H -0.193 1.193 21 N -0.118 5.118 22 H 0.261 0.739 23 C -0.027 4.027 24 C -0.154 4.154 25 C -0.267 4.267 26 C 0.315 3.685 27 C -0.255 4.255 28 O -0.327 6.327 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.112 0.888 35 H 0.081 0.919 36 H 0.241 0.759 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.230 0.770 40 H 0.085 0.915 41 H 0.103 0.897 42 H 0.102 0.898 43 H 0.094 0.906 44 H 0.102 0.898 45 H 0.109 0.891 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.733 1.949 -22.210 22.462 hybrid contribution 1.125 0.102 1.268 1.698 sum -1.608 2.051 -20.942 21.103 Atomic orbital electron populations 1.21742 0.95802 1.01416 1.01637 1.21389 0.95534 0.95966 1.02143 1.20254 0.88288 0.97988 1.03174 1.19488 0.95327 1.00093 0.89023 1.19813 0.82923 1.19341 0.93804 1.16994 0.85948 0.77090 0.82761 1.90804 1.15597 1.50849 1.83275 1.45579 1.10348 1.74587 1.05634 1.20978 0.96633 1.03558 0.80511 1.19706 0.89604 0.85877 0.83641 1.90477 1.25395 1.57805 1.75197 1.41796 1.10159 1.62209 1.03853 1.19723 0.88390 1.48492 0.87019 0.87671 1.25342 0.98123 0.96634 0.97556 1.69609 1.20977 1.48923 1.13717 0.85804 0.80668 0.78534 0.78981 1.20206 1.20721 1.19314 1.41630 1.07948 1.55722 1.06460 0.73894 1.20589 0.95479 1.03581 0.83086 1.20520 0.92529 1.03681 0.98629 1.19815 0.92499 1.19553 0.94829 1.21677 0.70954 0.90164 0.85739 1.22245 1.04616 0.96920 1.01676 1.90556 1.36893 1.35718 1.69539 0.93139 0.92949 0.92387 0.92295 0.91683 0.88751 0.91913 0.75924 0.89514 0.89540 0.76960 0.91480 0.89734 0.89780 0.90601 0.89843 0.89139 0.88812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.91 37.15 0.37 -1.23 16 2 C -0.11 -1.42 5.92 -26.73 -0.16 -1.58 16 3 C -0.06 -0.74 4.97 -27.88 -0.14 -0.88 16 4 C -0.03 -0.41 5.47 -104.07 -0.57 -0.98 16 5 C -0.05 -0.64 6.98 -82.40 -0.58 -1.21 16 6 C 0.59 9.21 7.79 -12.78 -0.10 9.11 16 7 O -0.53 -9.41 14.68 5.21 0.08 -9.33 16 8 N -0.71 -11.31 5.52 -62.75 -0.35 -11.66 16 9 C 0.11 1.96 6.15 -5.19 -0.03 1.92 16 10 C 0.43 9.43 7.85 -10.98 -0.09 9.34 16 11 O -0.60 -14.76 15.24 5.55 0.08 -14.68 16 12 N -0.55 -13.18 5.29 -10.96 -0.06 -13.24 16 13 C -0.31 -8.15 9.68 -14.93 -0.14 -8.29 16 14 H 0.11 2.91 7.16 -52.49 -0.38 2.53 16 15 C 0.03 0.69 5.50 -17.47 -0.10 0.59 16 16 N -0.89 -23.40 13.05 55.50 0.72 -22.68 16 17 Si 0.93 20.13 29.55 -169.99 -5.02 15.10 16 18 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 19 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 20 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 21 N -0.52 -5.52 5.90 -5.55 -0.03 -5.56 16 22 H 0.42 3.67 8.13 -40.82 -0.33 3.34 16 23 C 0.09 0.92 7.21 -81.46 -0.59 0.34 16 24 C -0.10 -0.60 10.20 36.01 0.37 -0.23 16 25 C -0.26 -2.96 5.71 -105.11 -0.60 -3.56 16 26 C 0.44 4.65 6.53 -30.93 -0.20 4.44 16 27 C -0.20 -1.31 10.32 36.01 0.37 -0.94 16 28 O -0.45 -6.25 17.86 5.52 0.10 -6.15 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.64 8.14 -51.92 -0.42 0.21 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.09 1.31 6.41 -51.93 -0.33 0.98 16 35 H 0.06 0.68 8.05 -51.93 -0.42 0.26 16 36 H 0.40 6.16 6.51 -40.82 -0.27 5.90 16 37 H 0.09 1.46 8.14 -51.94 -0.42 1.04 16 38 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 39 H 0.40 9.21 7.90 -40.82 -0.32 8.89 16 40 H 0.28 6.81 8.31 -40.82 -0.34 6.48 16 41 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.08 0.52 8.07 -51.93 -0.42 0.10 16 43 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 44 H 0.08 0.47 7.99 -51.93 -0.41 0.06 16 45 H 0.09 0.47 8.14 -51.92 -0.42 0.05 16 46 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 396.70 15.07 5.98 5.98 Total: -1.00 -32.52 396.70 -7.35 -39.87 By element: Atomic # 1 Polarization: 22.16 SS G_CDS: -6.67 Total: 15.50 kcal Atomic # 6 Polarization: 9.02 SS G_CDS: -2.18 Total: 6.84 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: 0.29 Total: -53.13 kcal Atomic # 8 Polarization: -30.42 SS G_CDS: 0.26 Total: -30.16 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.52 -7.35 -39.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343548036.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.914 kcal (2) G-P(sol) polarization free energy of solvation -32.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds