Wall clock time and date at job start Tue Mar 31 2020 22:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47610 * 2 1 4 4 C 1.50697 * 109.47284 * 180.02562 * 3 2 1 5 5 C 1.36243 * 126.50892 * 270.04289 * 4 3 2 6 6 C 1.46842 * 125.79961 * 359.97438 * 5 4 3 7 7 O 1.21674 * 120.00353 * 359.97438 * 6 5 4 8 8 N 1.34775 * 119.99865 * 180.02562 * 6 5 4 9 9 C 1.46504 * 119.99801 * 179.97438 * 8 6 5 10 10 C 1.50700 * 109.46831 * 179.97438 * 9 8 6 11 11 O 1.21294 * 120.00190 * 0.02562 * 10 9 8 12 12 N 1.34782 * 119.99889 * 179.97438 * 10 9 8 13 13 C 1.37096 * 119.99830 * 180.02562 * 12 10 9 14 14 H 1.07997 * 120.00114 * 0.02562 * 13 12 10 15 15 C 1.38955 * 119.99732 * 180.02562 * 13 12 10 16 16 N 1.31402 * 119.99956 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99824 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47262 * 89.99906 * 17 15 13 19 19 H 1.48499 * 109.47252 * 210.00033 * 17 15 13 20 20 H 1.48499 * 109.47292 * 329.99681 * 17 15 13 21 21 N 1.37839 * 108.39737 * 179.70929 * 5 4 3 22 22 H 0.96999 * 125.34855 * 180.30641 * 21 5 4 23 23 C 1.34114 * 109.30251 * 0.42646 * 21 5 4 24 24 C 1.50703 * 125.82091 * 179.83189 * 23 21 5 25 25 C 1.38611 * 108.34872 * 359.57742 * 23 21 5 26 26 C 1.46614 * 126.51789 * 180.26412 * 25 23 21 27 27 C 1.50700 * 119.99815 * 274.38285 * 26 25 23 28 28 O 1.21320 * 120.00257 * 94.38257 * 26 25 23 29 29 H 1.09004 * 109.47053 * 59.99729 * 1 2 3 30 30 H 1.09001 * 109.47781 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46835 * 300.00367 * 1 2 3 32 32 H 1.09005 * 109.46988 * 240.00157 * 2 1 3 33 33 H 1.09004 * 109.47053 * 120.00271 * 2 1 3 34 34 H 1.08997 * 109.46841 * 59.99773 * 3 2 1 35 35 H 1.08998 * 109.46703 * 300.00234 * 3 2 1 36 36 H 0.96993 * 120.00304 * 359.97438 * 8 6 5 37 37 H 1.08989 * 109.47417 * 299.99637 * 9 8 6 38 38 H 1.09000 * 109.47076 * 60.00370 * 9 8 6 39 39 H 0.97002 * 119.99880 * 0.02562 * 12 10 9 40 40 H 0.97006 * 119.99963 * 180.02562 * 16 15 13 41 41 H 1.09003 * 109.47225 * 264.37768 * 24 23 21 42 42 H 1.09005 * 109.46237 * 144.38059 * 24 23 21 43 43 H 1.08991 * 109.47436 * 24.38156 * 24 23 21 44 44 H 1.08997 * 109.47420 * 4.99400 * 27 26 25 45 45 H 1.09009 * 109.47224 * 124.99254 * 27 26 25 46 46 H 1.09004 * 109.47619 * 244.99386 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5471 1.4424 -0.0006 5 6 4.3581 1.4414 1.0941 6 6 3.9124 1.4407 2.4933 7 8 2.7238 1.4415 2.7532 8 7 4.8201 1.4402 3.4896 9 6 4.3754 1.4401 4.8855 10 6 5.5768 1.4389 5.7953 11 8 6.6945 1.4387 5.3241 12 7 5.4094 1.4391 7.1327 13 6 6.5023 1.4385 7.9603 14 1 7.4974 1.4383 7.5407 15 6 6.3296 1.4382 9.3391 16 7 5.1188 1.4379 9.8496 17 14 7.8188 1.4381 10.4668 18 1 8.2132 2.8382 10.7660 19 1 7.4815 0.7378 11.7321 20 1 8.9455 0.7384 9.7990 21 7 5.6680 1.4350 0.6651 22 1 6.4475 1.4288 1.2422 23 6 5.6953 1.4415 -0.6758 24 6 6.9350 1.4413 -1.5327 25 6 4.3889 1.4425 -1.1389 26 6 3.9602 1.4434 -2.5410 27 6 3.8361 2.7452 -3.2901 28 8 3.7054 0.3963 -3.0981 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3635 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.6767 1.9563 -0.8900 36 1 5.7676 1.4399 3.2824 37 1 3.7760 2.3301 5.0760 38 1 3.7753 0.5502 5.0756 39 1 4.5155 1.4396 7.5095 40 1 4.9983 1.4380 10.8121 41 1 7.1803 2.4646 -1.8171 42 1 6.7567 0.8478 -2.4294 43 1 7.7646 1.0115 -0.9715 44 1 4.1884 3.5619 -2.6601 45 1 4.4380 2.7008 -4.1978 46 1 2.7922 2.9144 -3.5542 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343548036.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:37 Heat of formation + Delta-G solvation = -114.080818 kcal Electronic energy + Delta-G solvation = -28480.256898 eV Core-core repulsion = 24368.856248 eV Total energy + Delta-G solvation = -4111.400650 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.79685 -40.79855 -39.95553 -39.54583 -36.52607 -36.13301 -35.27829 -33.42760 -32.97550 -32.60333 -30.62507 -29.74038 -28.22990 -27.32173 -26.19422 -23.74561 -22.92734 -22.14528 -21.45690 -20.56668 -20.07254 -19.73213 -19.32440 -17.62567 -17.17317 -16.93218 -16.75908 -16.44625 -16.33210 -16.18755 -15.86872 -15.69599 -15.57704 -15.38031 -15.05613 -14.89146 -14.69350 -14.14882 -14.02396 -13.86060 -13.66396 -13.56920 -13.31229 -13.20732 -13.02818 -12.95222 -12.92524 -12.70211 -12.48371 -12.16423 -12.14324 -12.13823 -11.65908 -11.59642 -11.13451 -10.79949 -10.60872 -10.35098 -10.12451 -9.86207 -9.15021 -8.53667 -6.04054 0.34200 0.90581 1.28082 1.34405 1.41546 1.53799 1.86365 1.86513 1.98389 2.20728 2.28577 3.06317 3.13677 3.30133 3.69332 3.73792 3.96730 4.03214 4.16762 4.21403 4.25481 4.33280 4.38713 4.40033 4.48737 4.61746 4.66563 4.70875 4.77793 4.80453 4.88764 4.97460 5.03664 5.04410 5.10032 5.18859 5.23439 5.35703 5.39496 5.44365 5.55030 5.70904 5.88522 6.27135 6.41436 6.45924 6.55470 6.99585 7.01811 7.40549 7.90019 8.63112 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018425 B = 0.002339 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.340047 B =11968.696687 C =13199.214472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.107 4.107 3 C -0.058 4.058 4 C -0.037 4.037 5 C -0.075 4.075 6 C 0.587 3.413 7 O -0.554 6.554 8 N -0.708 5.708 9 C 0.123 3.877 10 C 0.432 3.568 11 O -0.625 6.625 12 N -0.558 5.558 13 C -0.337 4.337 14 H 0.087 0.913 15 C -0.010 4.010 16 N -0.915 5.915 17 Si 0.997 3.003 18 H -0.269 1.269 19 H -0.272 1.272 20 H -0.270 1.270 21 N -0.516 5.516 22 H 0.431 0.569 23 C 0.116 3.884 24 C -0.097 4.097 25 C -0.281 4.281 26 C 0.444 3.556 27 C -0.191 4.191 28 O -0.493 6.493 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.041 0.959 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.408 0.592 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.399 0.601 40 H 0.280 0.720 41 H 0.110 0.890 42 H 0.087 0.913 43 H 0.090 0.910 44 H 0.095 0.905 45 H 0.110 0.890 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.646 3.285 -23.671 23.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.145 4.145 3 C -0.096 4.096 4 C -0.046 4.046 5 C -0.186 4.186 6 C 0.376 3.624 7 O -0.433 6.433 8 N -0.361 5.361 9 C -0.004 4.004 10 C 0.219 3.781 11 O -0.513 6.513 12 N -0.193 5.193 13 C -0.467 4.467 14 H 0.105 0.895 15 C -0.211 4.211 16 N -0.555 5.555 17 Si 0.820 3.180 18 H -0.195 1.195 19 H -0.197 1.197 20 H -0.194 1.194 21 N -0.112 5.112 22 H 0.271 0.729 23 C -0.008 4.008 24 C -0.154 4.154 25 C -0.288 4.288 26 C 0.322 3.678 27 C -0.248 4.248 28 O -0.369 6.369 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.245 0.755 37 H 0.117 0.883 38 H 0.114 0.886 39 H 0.233 0.767 40 H 0.090 0.910 41 H 0.128 0.872 42 H 0.106 0.894 43 H 0.109 0.891 44 H 0.114 0.886 45 H 0.128 0.872 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.865 2.729 -23.656 23.885 hybrid contribution 0.871 -0.137 1.601 1.828 sum -0.994 2.592 -22.054 22.228 Atomic orbital electron populations 1.21718 0.94298 1.02063 1.02149 1.21315 0.96863 0.95781 1.00572 1.20230 0.88419 0.97753 1.03151 1.19692 0.95652 0.99544 0.89677 1.19477 0.84387 1.22192 0.92548 1.17250 0.85460 0.76197 0.83472 1.90784 1.16582 1.52112 1.83839 1.45525 1.10641 1.75020 1.04929 1.20800 0.94520 1.04555 0.80567 1.20364 0.90501 0.83726 0.83469 1.90454 1.26962 1.58259 1.75648 1.41845 1.09791 1.63170 1.04465 1.19731 0.88384 1.50476 0.88060 0.89481 1.26137 1.00880 0.95727 0.98377 1.69675 1.22444 1.49092 1.14288 0.84870 0.77279 0.78751 0.77117 1.19482 1.19724 1.19415 1.41621 1.07269 1.55317 1.07012 0.72900 1.21224 0.96404 1.00305 0.82826 1.20717 0.91045 1.05518 0.98112 1.20083 0.92986 1.20604 0.95175 1.22159 0.69320 0.91044 0.85269 1.22263 1.05731 0.94703 1.02107 1.90550 1.38824 1.37384 1.70139 0.91613 0.92279 0.92825 0.92955 0.93994 0.90341 0.90196 0.75484 0.88345 0.88638 0.76668 0.91022 0.87178 0.89404 0.89134 0.88576 0.87185 0.87773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.06 9.91 71.98 0.71 -2.35 16 2 C -0.11 -2.76 5.92 30.59 0.18 -2.58 16 3 C -0.06 -1.45 4.97 29.85 0.15 -1.30 16 4 C -0.04 -0.97 5.47 -19.51 -0.11 -1.07 16 5 C -0.08 -2.01 6.98 39.99 0.28 -1.74 16 6 C 0.59 18.67 7.79 86.49 0.67 19.34 16 7 O -0.55 -20.14 14.68 -4.27 -0.06 -20.21 16 8 N -0.71 -22.62 5.52 -470.67 -2.60 -25.22 16 9 C 0.12 4.36 6.15 85.63 0.53 4.88 16 10 C 0.43 19.32 7.85 87.66 0.69 20.01 16 11 O -0.62 -30.96 15.24 -3.07 -0.05 -31.00 16 12 N -0.56 -27.36 5.29 -306.97 -1.62 -28.98 16 13 C -0.34 -18.19 9.68 84.04 0.81 -17.38 16 14 H 0.09 4.93 7.16 -2.91 -0.02 4.91 16 15 C -0.01 -0.53 5.50 84.93 0.47 -0.06 16 16 N -0.92 -47.97 13.05 21.66 0.28 -47.68 16 17 Si 1.00 40.99 29.55 68.60 2.03 43.01 16 18 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16 19 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 20 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 21 N -0.52 -10.34 5.90 -171.48 -1.01 -11.35 16 22 H 0.43 6.96 8.13 -92.71 -0.75 6.21 16 23 C 0.12 2.04 7.21 42.30 0.31 2.34 16 24 C -0.10 -0.90 10.20 71.24 0.73 -0.17 16 25 C -0.28 -6.07 5.71 -20.18 -0.12 -6.18 16 26 C 0.44 8.67 6.53 27.87 0.18 8.85 16 27 C -0.19 -2.00 10.32 71.24 0.73 -1.27 16 28 O -0.49 -13.16 17.86 -3.15 -0.06 -13.21 16 29 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 32 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 33 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.08 2.23 6.41 -2.39 -0.02 2.21 16 35 H 0.08 1.67 8.05 -2.39 -0.02 1.65 16 36 H 0.41 12.40 6.51 -92.71 -0.60 11.80 16 37 H 0.10 3.29 8.14 -2.39 -0.02 3.27 16 38 H 0.10 3.25 8.14 -2.39 -0.02 3.23 16 39 H 0.40 18.87 7.90 -92.71 -0.73 18.14 16 40 H 0.28 13.75 8.31 -92.70 -0.77 12.98 16 41 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 42 H 0.09 0.83 8.07 -2.38 -0.02 0.81 16 43 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.10 0.78 7.99 -2.39 -0.02 0.76 16 45 H 0.11 0.77 8.14 -2.38 -0.02 0.75 16 46 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -70.96 396.70 2.08 -68.88 By element: Atomic # 1 Polarization: 45.48 SS G_CDS: -1.05 Total: 44.44 kcal Atomic # 6 Polarization: 15.10 SS G_CDS: 6.22 Total: 21.32 kcal Atomic # 7 Polarization: -108.28 SS G_CDS: -4.95 Total: -113.23 kcal Atomic # 8 Polarization: -64.26 SS G_CDS: -0.17 Total: -64.42 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 2.03 Total: 43.01 kcal Total: -70.96 2.08 -68.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343548036.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.200 kcal (2) G-P(sol) polarization free energy of solvation -70.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds