Wall clock time and date at job start Tue Mar 31 2020 20:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.46709 * 2 1 4 4 N 1.33696 * 126.27786 * 270.13807 * 3 2 1 5 5 C 1.30616 * 108.99856 * 180.26098 * 4 3 2 6 6 O 1.33664 * 109.15113 * 359.76384 * 5 4 3 7 7 C 1.35339 * 107.68947 * 359.97438 * 6 5 4 8 8 C 1.46726 * 126.64570 * 179.97438 * 7 6 5 9 9 O 1.21687 * 119.99641 * 180.02562 * 8 7 6 10 10 N 1.34773 * 120.00157 * 0.03048 * 8 7 6 11 11 C 1.47088 * 125.62589 * 0.02611 * 10 8 7 12 12 C 1.54464 * 107.29091 * 178.98620 * 11 10 8 13 13 C 1.54377 * 102.86946 * 338.49644 * 12 11 10 14 14 C 1.47571 * 125.63206 * 179.97438 * 10 8 7 15 15 C 1.51928 * 110.20433 * 152.43427 * 13 12 11 16 16 N 1.47333 * 108.63900 * 73.55925 * 15 13 12 17 17 C 1.36940 * 121.07773 * 229.11196 * 16 15 13 18 18 H 1.07993 * 119.99936 * 154.18157 * 17 16 15 19 19 C 1.38812 * 119.99678 * 334.18876 * 17 16 15 20 20 N 1.31623 * 120.00132 * 343.40636 * 19 17 16 21 21 Si 1.86802 * 119.99629 * 163.41457 * 19 17 16 22 22 H 1.48504 * 109.46578 * 179.97438 * 21 19 17 23 23 H 1.48498 * 109.46964 * 299.99635 * 21 19 17 24 24 H 1.48494 * 109.47284 * 59.99752 * 21 19 17 25 25 C 1.47165 * 117.84118 * 48.84117 * 16 15 13 26 26 C 1.53263 * 108.58180 * 309.06262 * 25 16 15 27 27 O 1.41883 * 110.71044 * 276.29422 * 13 12 11 28 28 H 1.09001 * 109.47355 * 299.99937 * 1 2 3 29 29 H 1.09000 * 109.47517 * 59.99822 * 1 2 3 30 30 H 1.09003 * 109.46943 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.46882 * 240.00394 * 2 1 3 32 32 H 1.08994 * 109.46986 * 119.99741 * 2 1 3 33 33 H 1.07994 * 125.42286 * 179.74505 * 5 4 3 34 34 H 1.08998 * 109.88172 * 59.55716 * 11 10 8 35 35 H 1.09005 * 110.00083 * 298.47377 * 11 10 8 36 36 H 1.09003 * 110.72941 * 220.14518 * 12 11 10 37 37 H 1.09005 * 110.72918 * 96.84308 * 12 11 10 38 38 H 1.09007 * 110.37338 * 84.50933 * 14 10 8 39 39 H 1.09003 * 110.37697 * 322.17239 * 14 10 8 40 40 H 1.09004 * 109.61611 * 313.71826 * 15 13 12 41 41 H 1.09003 * 109.49718 * 193.32870 * 15 13 12 42 42 H 0.96994 * 119.99751 * 180.02562 * 20 19 17 43 43 H 1.09003 * 109.61703 * 68.79721 * 25 16 15 44 44 H 1.09009 * 109.61684 * 189.33242 * 25 16 15 45 45 H 1.09003 * 109.51409 * 172.89690 * 26 25 16 46 46 H 1.08998 * 109.51638 * 293.04788 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.2934 2.1676 -1.0778 5 6 2.7152 3.3413 -0.6898 6 8 2.7315 3.3819 0.6461 7 6 2.3005 2.1816 1.0992 8 6 2.1567 1.7753 2.5017 9 8 1.7562 0.6589 2.7737 10 7 2.4682 2.6385 3.4888 11 6 2.9605 4.0119 3.3022 12 6 3.1552 4.6247 4.7066 13 6 2.2430 3.7497 5.5929 14 6 2.3706 2.3622 4.9351 15 6 2.7699 3.7177 7.0176 16 7 2.4914 5.0180 7.6520 17 6 3.4706 5.7018 8.3219 18 1 3.4111 6.7760 8.4161 19 6 4.5396 5.0142 8.8798 20 7 4.4637 3.7123 9.0584 21 14 6.0859 5.9366 9.3774 22 1 7.0713 4.9811 9.9442 23 1 6.6703 6.6023 8.1855 24 1 5.7452 6.9596 10.3984 25 6 1.1284 5.5609 7.5371 26 6 0.7144 5.5332 6.0617 27 8 0.9025 4.2122 5.5439 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8932 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.0051 4.1500 -1.3443 34 1 2.2297 4.5947 2.7415 35 1 3.9111 3.9980 2.7689 36 1 2.8273 5.6641 4.7229 37 1 4.1951 4.5419 5.0229 38 1 3.2703 1.8569 5.2865 39 1 1.4880 1.7588 5.1475 40 1 3.8448 3.5374 7.0062 41 1 2.2700 2.9238 7.5726 42 1 5.2105 3.2320 9.4486 43 1 0.4406 4.9499 8.1218 44 1 1.1114 6.5876 7.9029 45 1 -0.3354 5.8130 5.9727 46 1 1.3281 6.2359 5.4981 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972544202.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:29 Heat of formation + Delta-G solvation = -18.907384 kcal Electronic energy + Delta-G solvation = -30355.295102 eV Core-core repulsion = 26248.021483 eV Total energy + Delta-G solvation = -4107.273620 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.62151 -40.24898 -38.75067 -36.48024 -35.60758 -34.51899 -33.10142 -31.76869 -31.32603 -29.77713 -29.63657 -27.53050 -26.07145 -24.47609 -23.85800 -23.43117 -22.56419 -21.69771 -21.03827 -19.87779 -18.95584 -17.63540 -17.20695 -17.02956 -16.77012 -16.10128 -15.59472 -15.26444 -15.14662 -14.85076 -14.44538 -14.30095 -14.17039 -13.74717 -13.55099 -13.43996 -13.09643 -12.84050 -12.81189 -12.74871 -12.34590 -12.25196 -11.67238 -11.42192 -11.29900 -11.19440 -11.13966 -10.99776 -10.97942 -10.90598 -10.76034 -10.36302 -10.34176 -10.13776 -10.00364 -9.61963 -9.17917 -9.13292 -8.61077 -8.54718 -6.82477 -5.91168 -3.33910 0.68943 2.24514 2.29307 3.01122 3.04225 3.30017 3.36734 3.37130 3.80790 4.09841 4.36198 4.44881 4.51872 4.81367 4.93552 5.11325 5.20947 5.22250 5.28145 5.29580 5.34557 5.38131 5.49757 5.55304 5.69243 5.77254 5.79999 5.82364 5.89469 5.93503 5.96072 6.06802 6.08202 6.16160 6.19848 6.25687 6.33848 6.43843 6.56287 6.72762 6.98455 7.29236 7.35918 7.47362 7.64537 7.84969 7.97753 8.24979 9.03631 9.66671 10.23906 11.17393 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.019035 B = 0.003082 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.650167 B = 9082.073493 C = 9306.160802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.051 4.051 3 C 0.077 3.923 4 N -0.492 5.492 5 C 0.193 3.807 6 O -0.186 6.186 7 C -0.099 4.099 8 C 0.618 3.382 9 O -0.517 6.517 10 N -0.599 5.599 11 C 0.105 3.895 12 C -0.143 4.143 13 C 0.085 3.915 14 C 0.125 3.875 15 C 0.163 3.837 16 N -0.592 5.592 17 C -0.254 4.254 18 H 0.069 0.931 19 C 0.004 3.996 20 N -0.903 5.903 21 Si 0.904 3.096 22 H -0.289 1.289 23 H -0.283 1.283 24 H -0.282 1.282 25 C 0.109 3.891 26 C 0.046 3.954 27 O -0.374 6.374 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.100 0.900 33 H 0.255 0.745 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.098 0.902 41 H 0.031 0.969 42 H 0.257 0.743 43 H 0.027 0.973 44 H 0.063 0.937 45 H 0.083 0.917 46 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.964 -0.468 -17.257 17.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.089 4.089 3 C -0.047 4.047 4 N -0.221 5.221 5 C -0.032 4.032 6 O -0.071 6.071 7 C -0.154 4.154 8 C 0.405 3.595 9 O -0.395 6.395 10 N -0.331 5.331 11 C -0.017 4.017 12 C -0.181 4.181 13 C 0.043 3.957 14 C 0.003 3.997 15 C 0.037 3.963 16 N -0.316 5.316 17 C -0.383 4.383 18 H 0.086 0.914 19 C -0.195 4.195 20 N -0.547 5.547 21 Si 0.733 3.267 22 H -0.215 1.215 23 H -0.210 1.210 24 H -0.208 1.208 25 C -0.017 4.017 26 C -0.032 4.032 27 O -0.293 6.293 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.098 0.902 32 H 0.119 0.881 33 H 0.270 0.730 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.109 0.891 39 H 0.107 0.893 40 H 0.116 0.884 41 H 0.049 0.951 42 H 0.067 0.933 43 H 0.045 0.955 44 H 0.081 0.919 45 H 0.101 0.899 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.244 -1.425 -17.704 18.261 hybrid contribution 1.200 1.227 0.890 1.933 sum -3.044 -0.198 -16.814 17.088 Atomic orbital electron populations 1.21636 0.93812 1.02254 1.02023 1.20149 0.96679 0.87734 1.04315 1.22032 0.98194 0.98223 0.86281 1.70324 1.17004 1.03285 1.31488 1.28301 0.97579 0.97637 0.79726 1.84596 1.64250 1.34152 1.24121 1.22949 1.11219 0.85079 0.96190 1.15888 0.78585 0.84198 0.80807 1.90858 1.47692 1.19383 1.81607 1.48413 1.63506 1.14316 1.06825 1.22165 0.98835 0.81706 0.99019 1.23063 1.01980 1.00713 0.92389 1.22619 0.83100 0.91692 0.98245 1.22205 1.03326 0.96782 0.77343 1.21049 1.01632 0.87957 0.85702 1.44039 1.05031 1.21077 1.61449 1.19119 1.00296 0.90362 1.28567 0.91363 1.25026 1.00189 0.95884 0.98394 1.69998 1.31174 1.06875 1.46632 0.86351 0.83032 0.78880 0.78410 1.21526 1.20966 1.20845 1.21590 0.88238 0.98433 0.93447 1.23110 0.99962 0.83990 0.96130 1.87657 1.26132 1.32120 1.83398 0.92263 0.92828 0.91691 0.90176 0.88148 0.72985 0.91445 0.91426 0.89377 0.89256 0.89100 0.89261 0.88359 0.95109 0.93342 0.95473 0.91869 0.89910 0.93463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.89 37.16 0.37 -1.14 16 2 C -0.05 -0.60 5.92 -27.88 -0.17 -0.76 16 3 C 0.08 1.01 6.41 -82.46 -0.53 0.48 16 4 N -0.49 -5.88 11.26 -10.88 -0.12 -6.01 16 5 C 0.19 1.76 13.21 52.25 0.69 2.45 16 6 O -0.19 -2.18 8.50 4.44 0.04 -2.15 16 7 C -0.10 -1.39 6.98 -36.84 -0.26 -1.65 16 8 C 0.62 9.93 7.82 -12.83 -0.10 9.83 16 9 O -0.52 -9.17 15.06 5.20 0.08 -9.09 16 10 N -0.60 -9.51 3.33 -172.29 -0.57 -10.08 16 11 C 0.11 1.49 5.57 -2.95 -0.02 1.48 16 12 C -0.14 -2.32 5.86 -25.24 -0.15 -2.47 16 13 C 0.09 1.56 0.84 -89.88 -0.08 1.49 16 14 C 0.13 2.14 6.09 -2.89 -0.02 2.12 16 15 C 0.16 3.63 4.03 -4.13 -0.02 3.61 16 16 N -0.59 -13.90 2.99 -172.51 -0.52 -14.42 16 17 C -0.25 -6.52 9.66 -15.06 -0.15 -6.67 16 18 H 0.07 1.71 7.88 -52.49 -0.41 1.30 16 19 C 0.00 0.10 4.96 -17.43 -0.09 0.02 16 20 N -0.90 -24.78 11.12 55.49 0.62 -24.17 16 21 Si 0.90 20.58 29.59 -169.99 -5.03 15.55 16 22 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 C 0.11 2.17 6.71 -3.54 -0.02 2.15 16 26 C 0.05 0.78 6.78 37.29 0.25 1.03 16 27 O -0.37 -7.01 10.29 -35.22 -0.36 -7.37 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.10 1.28 6.47 -51.93 -0.34 0.94 16 33 H 0.25 0.88 8.06 -52.49 -0.42 0.46 16 34 H 0.07 0.92 7.70 -51.93 -0.40 0.52 16 35 H 0.07 0.87 7.81 -51.93 -0.41 0.46 16 36 H 0.09 1.42 6.07 -51.93 -0.32 1.11 16 37 H 0.09 1.51 7.81 -51.93 -0.41 1.11 16 38 H 0.09 1.51 7.99 -51.93 -0.42 1.09 16 39 H 0.09 1.58 8.05 -51.93 -0.42 1.16 16 40 H 0.10 2.39 5.92 -51.93 -0.31 2.08 16 41 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 43 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.06 1.18 7.96 -51.92 -0.41 0.77 16 45 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 46 H 0.05 0.77 6.22 -51.93 -0.32 0.45 16 LS Contribution 367.46 15.07 5.54 5.54 Total: -1.00 -30.98 367.46 -7.27 -38.25 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -6.67 Total: 1.97 kcal Atomic # 6 Polarization: 12.24 SS G_CDS: -0.27 Total: 11.97 kcal Atomic # 7 Polarization: -54.08 SS G_CDS: -0.59 Total: -54.67 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: -0.25 Total: -18.61 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.03 Total: 15.55 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.98 -7.27 -38.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972544202.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.345 kcal (2) G-P(sol) polarization free energy of solvation -30.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds