Wall clock time and date at job start Tue Mar 31 2020 20:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.46709 * 2 1 4 4 N 1.33696 * 126.27786 * 270.13807 * 3 2 1 5 5 C 1.30616 * 108.99856 * 180.26098 * 4 3 2 6 6 O 1.33664 * 109.15113 * 359.76384 * 5 4 3 7 7 C 1.35339 * 107.68947 * 359.97438 * 6 5 4 8 8 C 1.46726 * 126.64570 * 179.97438 * 7 6 5 9 9 O 1.21687 * 119.99641 * 180.02562 * 8 7 6 10 10 N 1.34773 * 120.00157 * 0.03048 * 8 7 6 11 11 C 1.47088 * 125.62589 * 0.02611 * 10 8 7 12 12 C 1.54464 * 107.29091 * 178.98620 * 11 10 8 13 13 C 1.54377 * 102.86946 * 338.49644 * 12 11 10 14 14 C 1.47571 * 125.63206 * 179.97438 * 10 8 7 15 15 C 1.51928 * 110.20433 * 152.43427 * 13 12 11 16 16 N 1.47333 * 108.63900 * 73.55925 * 15 13 12 17 17 C 1.36940 * 121.07773 * 229.11196 * 16 15 13 18 18 H 1.07993 * 119.99936 * 154.18157 * 17 16 15 19 19 C 1.38812 * 119.99678 * 334.18876 * 17 16 15 20 20 N 1.31623 * 120.00132 * 343.40636 * 19 17 16 21 21 Si 1.86802 * 119.99629 * 163.41457 * 19 17 16 22 22 H 1.48504 * 109.46578 * 179.97438 * 21 19 17 23 23 H 1.48498 * 109.46964 * 299.99635 * 21 19 17 24 24 H 1.48494 * 109.47284 * 59.99752 * 21 19 17 25 25 C 1.47165 * 117.84118 * 48.84117 * 16 15 13 26 26 C 1.53263 * 108.58180 * 309.06262 * 25 16 15 27 27 O 1.41883 * 110.71044 * 276.29422 * 13 12 11 28 28 H 1.09001 * 109.47355 * 299.99937 * 1 2 3 29 29 H 1.09000 * 109.47517 * 59.99822 * 1 2 3 30 30 H 1.09003 * 109.46943 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.46882 * 240.00394 * 2 1 3 32 32 H 1.08994 * 109.46986 * 119.99741 * 2 1 3 33 33 H 1.07994 * 125.42286 * 179.74505 * 5 4 3 34 34 H 1.08998 * 109.88172 * 59.55716 * 11 10 8 35 35 H 1.09005 * 110.00083 * 298.47377 * 11 10 8 36 36 H 1.09003 * 110.72941 * 220.14518 * 12 11 10 37 37 H 1.09005 * 110.72918 * 96.84308 * 12 11 10 38 38 H 1.09007 * 110.37338 * 84.50933 * 14 10 8 39 39 H 1.09003 * 110.37697 * 322.17239 * 14 10 8 40 40 H 1.09004 * 109.61611 * 313.71826 * 15 13 12 41 41 H 1.09003 * 109.49718 * 193.32870 * 15 13 12 42 42 H 0.96994 * 119.99751 * 180.02562 * 20 19 17 43 43 H 1.09003 * 109.61703 * 68.79721 * 25 16 15 44 44 H 1.09009 * 109.61684 * 189.33242 * 25 16 15 45 45 H 1.09003 * 109.51409 * 172.89690 * 26 25 16 46 46 H 1.08998 * 109.51638 * 293.04788 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.2934 2.1676 -1.0778 5 6 2.7152 3.3413 -0.6898 6 8 2.7315 3.3819 0.6461 7 6 2.3005 2.1816 1.0992 8 6 2.1567 1.7753 2.5017 9 8 1.7562 0.6589 2.7737 10 7 2.4682 2.6385 3.4888 11 6 2.9605 4.0119 3.3022 12 6 3.1552 4.6247 4.7066 13 6 2.2430 3.7497 5.5929 14 6 2.3706 2.3622 4.9351 15 6 2.7699 3.7177 7.0176 16 7 2.4914 5.0180 7.6520 17 6 3.4706 5.7018 8.3219 18 1 3.4111 6.7760 8.4161 19 6 4.5396 5.0142 8.8798 20 7 4.4637 3.7123 9.0584 21 14 6.0859 5.9366 9.3774 22 1 7.0713 4.9811 9.9442 23 1 6.6703 6.6023 8.1855 24 1 5.7452 6.9596 10.3984 25 6 1.1284 5.5609 7.5371 26 6 0.7144 5.5332 6.0617 27 8 0.9025 4.2122 5.5439 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8932 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.0051 4.1500 -1.3443 34 1 2.2297 4.5947 2.7415 35 1 3.9111 3.9980 2.7689 36 1 2.8273 5.6641 4.7229 37 1 4.1951 4.5419 5.0229 38 1 3.2703 1.8569 5.2865 39 1 1.4880 1.7588 5.1475 40 1 3.8448 3.5374 7.0062 41 1 2.2700 2.9238 7.5726 42 1 5.2105 3.2320 9.4486 43 1 0.4406 4.9499 8.1218 44 1 1.1114 6.5876 7.9029 45 1 -0.3354 5.8130 5.9727 46 1 1.3281 6.2359 5.4981 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972544202.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:27 Heat of formation + Delta-G solvation = -41.216628 kcal Electronic energy + Delta-G solvation = -30356.262504 eV Core-core repulsion = 26248.021483 eV Total energy + Delta-G solvation = -4108.241021 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -44.50193 -41.61862 -40.10453 -37.77229 -36.62113 -36.25263 -34.00435 -33.27828 -33.06784 -30.98663 -30.79160 -29.11521 -27.62735 -25.70706 -25.11135 -24.64827 -23.75749 -23.14055 -22.15648 -21.00679 -20.43370 -18.93840 -18.82374 -18.04895 -17.69847 -17.53386 -16.96915 -16.60293 -16.43936 -16.14479 -15.87018 -15.78516 -15.22361 -15.20025 -15.03163 -14.58971 -14.47426 -14.39848 -14.10830 -13.74272 -13.73467 -13.63215 -13.09780 -12.82304 -12.64607 -12.53453 -12.48825 -12.29269 -12.19511 -12.17931 -12.08685 -12.00716 -11.84829 -11.83123 -11.28652 -11.17529 -10.77676 -10.47559 -10.19517 -9.75061 -8.72927 -7.88778 -5.34620 -0.26483 1.31516 1.38526 1.49308 1.50520 1.57528 1.89919 1.91353 2.49163 2.69221 3.09399 3.22441 3.32869 3.48427 3.55664 3.61608 3.86148 3.95829 4.16220 4.23094 4.26850 4.31072 4.35578 4.38450 4.45272 4.46535 4.54102 4.60686 4.65886 4.72968 4.78115 4.88812 4.93146 4.97868 5.02929 5.07748 5.09599 5.14606 5.21413 5.24751 5.31924 5.50676 5.63000 6.18870 6.29716 6.38174 6.49538 6.77627 7.07531 7.76057 8.30824 9.17646 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.019035 B = 0.003082 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.650167 B = 9082.073493 C = 9306.160802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.054 4.054 3 C 0.081 3.919 4 N -0.519 5.519 5 C 0.226 3.774 6 O -0.189 6.189 7 C -0.129 4.129 8 C 0.616 3.384 9 O -0.545 6.545 10 N -0.602 5.602 11 C 0.116 3.884 12 C -0.135 4.135 13 C 0.093 3.907 14 C 0.130 3.870 15 C 0.175 3.825 16 N -0.608 5.608 17 C -0.259 4.259 18 H 0.075 0.925 19 C -0.047 4.047 20 N -0.936 5.936 21 Si 0.966 3.034 22 H -0.298 1.298 23 H -0.273 1.273 24 H -0.278 1.278 25 C 0.104 3.896 26 C 0.052 3.948 27 O -0.383 6.383 28 H 0.037 0.963 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.310 0.690 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.076 0.924 40 H 0.074 0.926 41 H -0.006 1.006 42 H 0.251 0.749 43 H 0.014 0.986 44 H 0.075 0.925 45 H 0.116 0.884 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.882 1.653 -20.066 20.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.091 4.091 3 C -0.042 4.042 4 N -0.248 5.248 5 C 0.002 3.998 6 O -0.075 6.075 7 C -0.184 4.184 8 C 0.405 3.595 9 O -0.426 6.426 10 N -0.334 5.334 11 C -0.006 4.006 12 C -0.173 4.173 13 C 0.051 3.949 14 C 0.007 3.993 15 C 0.049 3.951 16 N -0.333 5.333 17 C -0.389 4.389 18 H 0.092 0.908 19 C -0.243 4.243 20 N -0.582 5.582 21 Si 0.794 3.206 22 H -0.224 1.224 23 H -0.199 1.199 24 H -0.204 1.204 25 C -0.022 4.022 26 C -0.025 4.025 27 O -0.302 6.302 28 H 0.056 0.944 29 H 0.078 0.922 30 H 0.099 0.901 31 H 0.114 0.886 32 H 0.103 0.897 33 H 0.324 0.676 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.113 0.887 37 H 0.097 0.903 38 H 0.106 0.894 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.012 0.988 42 H 0.060 0.940 43 H 0.032 0.968 44 H 0.093 0.907 45 H 0.134 0.866 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.185 0.723 -20.538 20.973 hybrid contribution 1.117 0.611 1.719 2.139 sum -3.068 1.334 -18.819 19.114 Atomic orbital electron populations 1.21581 0.93148 1.03131 1.01197 1.20190 0.97212 0.87466 1.04282 1.22260 0.96863 0.98573 0.86543 1.70384 1.18832 1.04472 1.31069 1.29628 0.93399 0.97701 0.79050 1.84581 1.64495 1.33106 1.25349 1.22431 1.14393 0.86519 0.95087 1.16144 0.77880 0.83796 0.81685 1.90831 1.48874 1.20490 1.82368 1.48411 1.63859 1.15113 1.05993 1.22160 1.00122 0.80625 0.97699 1.22946 1.00631 1.00658 0.93057 1.22306 0.83476 0.93064 0.96025 1.21995 1.02654 0.95968 0.78678 1.20764 0.99793 0.86723 0.87856 1.44300 1.06309 1.21127 1.61544 1.19463 1.00735 0.90839 1.27843 0.90768 1.25752 1.02894 0.96547 0.99076 1.70166 1.31586 1.08334 1.48080 0.85362 0.79481 0.77486 0.78241 1.22441 1.19889 1.20389 1.21778 0.86147 0.98511 0.95738 1.23184 1.02190 0.83451 0.93666 1.87661 1.26072 1.33229 1.83270 0.94378 0.92153 0.90063 0.88576 0.89716 0.67561 0.90088 0.89546 0.88744 0.90323 0.89435 0.90525 0.90814 0.98758 0.94022 0.96840 0.90664 0.86572 0.92087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.77 9.89 71.98 0.71 -2.06 16 2 C -0.05 -1.22 5.92 29.85 0.18 -1.05 16 3 C 0.08 2.03 6.41 41.83 0.27 2.29 16 4 N -0.52 -10.91 11.26 -303.13 -3.41 -14.32 16 5 C 0.23 3.20 13.21 130.42 1.72 4.92 16 6 O -0.19 -3.86 8.50 -7.03 -0.06 -3.92 16 7 C -0.13 -3.46 6.98 24.05 0.17 -3.29 16 8 C 0.62 19.79 7.82 86.46 0.68 20.46 16 9 O -0.55 -19.94 15.06 -4.31 -0.06 -20.00 16 10 N -0.60 -18.93 3.33 -817.24 -2.72 -21.66 16 11 C 0.12 3.06 5.57 86.76 0.48 3.54 16 12 C -0.13 -4.23 5.86 31.56 0.18 -4.04 16 13 C 0.09 3.44 0.84 -10.31 -0.01 3.43 16 14 C 0.13 4.58 6.09 86.54 0.53 5.10 16 15 C 0.18 8.12 4.03 85.87 0.35 8.47 16 16 N -0.61 -28.94 2.99 -699.69 -2.09 -31.03 16 17 C -0.26 -13.34 9.66 84.03 0.81 -12.53 16 18 H 0.07 3.66 7.88 -2.91 -0.02 3.64 16 19 C -0.05 -2.50 4.96 84.86 0.42 -2.08 16 20 N -0.94 -53.22 11.12 21.65 0.24 -52.97 16 21 Si 0.97 42.60 29.59 68.60 2.03 44.63 16 22 H -0.30 -13.45 7.11 99.48 0.71 -12.74 16 23 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 24 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 25 C 0.10 4.06 6.71 86.34 0.58 4.64 16 26 C 0.05 1.66 6.78 72.07 0.49 2.15 16 27 O -0.38 -14.05 10.29 -148.95 -1.53 -15.58 16 28 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.08 2.20 6.47 -2.39 -0.02 2.19 16 33 H 0.31 0.24 8.06 -2.91 -0.02 0.22 16 34 H 0.08 1.96 7.70 -2.39 -0.02 1.94 16 35 H 0.09 1.99 7.81 -2.38 -0.02 1.97 16 36 H 0.09 2.84 6.07 -2.39 -0.01 2.82 16 37 H 0.08 2.64 7.81 -2.38 -0.02 2.62 16 38 H 0.09 3.09 7.99 -2.38 -0.02 3.07 16 39 H 0.08 2.86 8.05 -2.39 -0.02 2.85 16 40 H 0.07 3.77 5.92 -2.39 -0.01 3.76 16 41 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 42 H 0.25 13.95 8.31 -92.71 -0.77 13.17 16 43 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 44 H 0.07 2.72 7.96 -2.38 -0.02 2.71 16 45 H 0.12 2.96 8.14 -2.39 -0.02 2.94 16 46 H 0.06 1.81 6.22 -2.39 -0.01 1.79 16 Total: -1.00 -69.44 367.46 0.94 -68.49 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: 1.00 Total: 16.38 kcal Atomic # 6 Polarization: 22.42 SS G_CDS: 7.56 Total: 29.98 kcal Atomic # 7 Polarization: -112.00 SS G_CDS: -7.98 Total: -119.98 kcal Atomic # 8 Polarization: -37.85 SS G_CDS: -1.66 Total: -39.50 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -69.44 0.94 -68.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972544202.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.277 kcal (2) G-P(sol) polarization free energy of solvation -69.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds