Wall clock time and date at job start Tue Mar 31 2020 20:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50695 * 109.47082 * 2 1 4 4 N 1.33696 * 126.27395 * 269.95375 * 3 2 1 5 5 C 1.30611 * 109.00013 * 180.02562 * 4 3 2 6 6 O 1.33670 * 109.15457 * 359.72762 * 5 4 3 7 7 C 1.35347 * 107.67860 * 0.43590 * 6 5 4 8 8 C 1.46721 * 126.64234 * 179.83600 * 7 6 5 9 9 O 1.21688 * 120.00288 * 187.03053 * 8 7 6 10 10 N 1.34779 * 120.00128 * 7.02984 * 8 7 6 11 11 C 1.46841 * 120.40766 * 356.43687 * 10 8 7 12 12 C 1.53791 * 109.01810 * 127.71287 * 11 10 8 13 13 C 1.52786 * 108.74562 * 54.06523 * 12 11 10 14 14 H 1.08996 * 108.96398 * 56.80426 * 13 12 11 15 15 O 1.42607 * 111.11505 * 177.34350 * 13 12 11 16 16 C 1.43145 * 113.63421 * 183.60971 * 15 13 12 17 17 C 1.53196 * 109.74019 * 298.31281 * 16 15 13 18 18 N 1.47595 * 109.31461 * 50.81463 * 17 16 15 19 19 C 1.36946 * 121.45669 * 130.15105 * 18 17 16 20 20 H 1.07997 * 119.99916 * 214.87010 * 19 18 17 21 21 C 1.38811 * 120.00030 * 34.87066 * 19 18 17 22 22 N 1.31623 * 119.99746 * 357.65458 * 21 19 18 23 23 Si 1.86796 * 120.00127 * 177.64970 * 21 19 18 24 24 H 1.48506 * 109.46930 * 90.00242 * 23 21 19 25 25 H 1.48497 * 109.47272 * 209.99900 * 23 21 19 26 26 H 1.48504 * 109.47272 * 330.00328 * 23 21 19 27 27 C 1.46871 * 117.23493 * 310.93080 * 18 17 16 28 28 H 1.08993 * 109.65347 * 290.87050 * 27 18 17 29 29 C 1.47132 * 120.41310 * 176.71285 * 10 8 7 30 30 H 1.09002 * 109.47274 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47729 * 300.00128 * 1 2 3 32 32 H 1.09003 * 109.47155 * 60.00874 * 1 2 3 33 33 H 1.08996 * 109.47590 * 239.99353 * 2 1 3 34 34 H 1.09007 * 109.46897 * 119.99833 * 2 1 3 35 35 H 1.08003 * 125.42369 * 180.02562 * 5 4 3 36 36 H 1.09002 * 109.51035 * 247.69414 * 11 10 8 37 37 H 1.08998 * 109.51366 * 7.83706 * 11 10 8 38 38 H 1.08995 * 109.72179 * 294.21794 * 12 11 10 39 39 H 1.09004 * 109.51390 * 173.77588 * 12 11 10 40 40 H 1.08997 * 109.42709 * 58.39430 * 16 15 13 41 41 H 1.09003 * 109.42538 * 178.23024 * 16 15 13 42 42 H 1.09001 * 109.57670 * 171.00419 * 17 16 15 43 43 H 1.08994 * 109.58018 * 291.40974 * 17 16 15 44 44 H 0.96999 * 119.99790 * 180.02562 * 22 21 19 45 45 H 1.08992 * 109.72756 * 352.87346 * 29 10 8 46 46 H 1.08996 * 109.72722 * 113.55174 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2968 2.1663 -1.0779 5 6 2.7127 3.3420 -0.6900 6 8 2.7210 3.3856 0.6460 7 6 2.3009 2.1815 1.0991 8 6 2.1564 1.7755 2.5016 9 8 1.8902 0.6203 2.7763 10 7 2.3184 2.6820 3.4857 11 6 2.7161 4.0596 3.1692 12 6 1.7274 5.0319 3.8342 13 6 1.6520 4.7115 5.3262 14 1 2.6532 4.7725 5.7526 15 8 0.7929 5.6250 6.0051 16 6 0.7466 5.4246 7.4217 17 6 0.1991 4.0272 7.7289 18 7 0.9452 3.0265 6.9413 19 6 1.4769 1.9083 7.5264 20 1 2.4138 1.5061 7.1701 21 6 0.8118 1.2919 8.5773 22 7 -0.3062 1.8083 9.0418 23 14 1.5033 -0.2706 9.3322 24 1 2.4202 0.0816 10.4460 25 1 0.3897 -1.1039 9.8525 26 1 2.2498 -1.0315 8.2983 27 6 1.1095 3.2878 5.5054 28 1 0.1462 3.1967 5.0036 29 6 2.1050 2.3019 4.8910 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8901 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 2.9994 4.1519 -1.3445 36 1 3.7219 4.2440 3.5466 37 1 2.6997 4.2042 2.0890 38 1 0.7407 4.9173 3.3856 39 1 2.0761 6.0557 3.6978 40 1 1.7511 5.5191 7.8342 41 1 0.0980 6.1754 7.8731 42 1 0.3130 3.8159 8.7922 43 1 -0.8550 3.9797 7.4559 44 1 -0.7708 1.3778 9.7765 45 1 1.7004 1.2911 4.9414 46 1 3.0500 2.3480 5.4322 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074336413.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:03 Heat of formation + Delta-G solvation = -13.366078 kcal Electronic energy + Delta-G solvation = -30696.361731 eV Core-core repulsion = 26589.328401 eV Total energy + Delta-G solvation = -4107.033331 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.67340 -40.07542 -38.57848 -36.55508 -35.52690 -34.71149 -33.11058 -31.93277 -31.44348 -30.15343 -29.52320 -27.17534 -25.69050 -24.22404 -24.08063 -23.49061 -22.27170 -21.65969 -21.01913 -19.89689 -19.56605 -17.48094 -17.19535 -16.88000 -16.78303 -15.93124 -15.56146 -15.23767 -15.11324 -14.92969 -14.54643 -14.27138 -14.03017 -13.73161 -13.69825 -13.57170 -13.11486 -12.87263 -12.81797 -12.61498 -12.44413 -11.95141 -11.57136 -11.39016 -11.28820 -11.15774 -11.09206 -11.05284 -10.90403 -10.73400 -10.53777 -10.30478 -10.21449 -10.10899 -9.97903 -9.65907 -9.15280 -8.99540 -8.58204 -8.44722 -6.67138 -5.88747 -3.42715 0.70395 2.23759 2.27390 2.99715 3.11810 3.32890 3.40792 3.42835 3.82466 4.22781 4.38403 4.42781 4.54156 4.83543 5.03924 5.14550 5.23007 5.28913 5.32367 5.34091 5.35684 5.38640 5.46212 5.60686 5.69670 5.80713 5.84088 5.88857 5.90374 6.07660 6.08313 6.08972 6.14082 6.21267 6.24669 6.31255 6.42112 6.55966 6.60299 6.82107 7.13899 7.26920 7.46219 7.55065 7.67513 7.87363 8.05839 8.34273 9.07911 9.67357 10.28794 11.18598 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013179 B = 0.004017 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.115004 B = 6968.847975 C = 8466.049403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.054 4.054 3 C 0.080 3.920 4 N -0.491 5.491 5 C 0.186 3.814 6 O -0.185 6.185 7 C -0.102 4.102 8 C 0.602 3.398 9 O -0.509 6.509 10 N -0.598 5.598 11 C 0.095 3.905 12 C -0.122 4.122 13 C 0.076 3.924 14 H 0.052 0.948 15 O -0.389 6.389 16 C 0.037 3.963 17 C 0.141 3.859 18 N -0.588 5.588 19 C -0.263 4.263 20 H 0.069 0.931 21 C 0.016 3.984 22 N -0.901 5.901 23 Si 0.903 3.097 24 H -0.286 1.286 25 H -0.288 1.288 26 H -0.276 1.276 27 C 0.138 3.862 28 H 0.037 0.963 29 C 0.125 3.875 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.080 0.920 34 H 0.103 0.897 35 H 0.253 0.747 36 H 0.073 0.927 37 H 0.109 0.891 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.039 0.961 41 H 0.081 0.919 42 H 0.102 0.898 43 H 0.027 0.973 44 H 0.256 0.744 45 H 0.106 0.894 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.004 5.988 -16.299 18.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.092 4.092 3 C -0.044 4.044 4 N -0.219 5.219 5 C -0.039 4.039 6 O -0.072 6.072 7 C -0.157 4.157 8 C 0.389 3.611 9 O -0.386 6.386 10 N -0.330 5.330 11 C -0.027 4.027 12 C -0.161 4.161 13 C 0.016 3.984 14 H 0.070 0.930 15 O -0.308 6.308 16 C -0.041 4.041 17 C 0.016 3.984 18 N -0.313 5.313 19 C -0.392 4.392 20 H 0.086 0.914 21 C -0.184 4.184 22 N -0.544 5.544 23 Si 0.732 3.268 24 H -0.213 1.213 25 H -0.214 1.214 26 H -0.201 1.201 27 C 0.030 3.970 28 H 0.055 0.945 29 C 0.004 3.996 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.098 0.902 34 H 0.121 0.879 35 H 0.269 0.731 36 H 0.092 0.908 37 H 0.126 0.874 38 H 0.091 0.909 39 H 0.099 0.901 40 H 0.058 0.942 41 H 0.100 0.900 42 H 0.120 0.880 43 H 0.045 0.955 44 H 0.067 0.933 45 H 0.125 0.875 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.592 5.293 -16.641 18.336 hybrid contribution 0.531 -0.354 1.187 1.347 sum 6.123 4.939 -15.454 17.341 Atomic orbital electron populations 1.21648 0.93780 1.02387 1.02017 1.20200 0.96681 0.87782 1.04547 1.22039 0.97859 0.98200 0.86284 1.70333 1.16766 1.03312 1.31499 1.28429 0.97455 0.97573 0.80428 1.84643 1.65455 1.33479 1.23603 1.23114 1.11507 0.84701 0.96370 1.16498 0.78040 0.85404 0.81191 1.90874 1.49142 1.17338 1.81265 1.48198 1.66631 1.10581 1.07632 1.22357 0.98109 0.80354 1.01913 1.21905 1.00278 0.99133 0.94744 1.22421 0.93360 0.91174 0.91428 0.93044 1.87743 1.67238 1.55470 1.20382 1.23384 1.00077 1.00346 0.80258 1.21588 0.93655 0.84140 0.99061 1.43959 1.64764 1.22592 0.99997 1.19059 1.02158 1.02648 1.15300 0.91352 1.25302 0.95398 0.97739 0.99925 1.69907 1.17285 1.39697 1.27514 0.86287 0.78010 0.83391 0.79098 1.21315 1.21399 1.20077 1.21283 0.96069 0.91711 0.87917 0.94501 1.21891 0.99960 1.01197 0.76535 0.91603 0.92283 0.92808 0.90153 0.87855 0.73119 0.90842 0.87387 0.90873 0.90135 0.94225 0.90048 0.88036 0.95505 0.93327 0.87530 0.90582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.89 37.16 0.37 -1.28 16 2 C -0.05 -0.67 6.01 -27.89 -0.17 -0.84 16 3 C 0.08 1.06 6.41 -82.47 -0.53 0.53 16 4 N -0.49 -5.80 11.26 -10.88 -0.12 -5.92 16 5 C 0.19 1.59 13.21 52.24 0.69 2.28 16 6 O -0.18 -1.99 7.26 4.40 0.03 -1.96 16 7 C -0.10 -1.41 6.87 -36.84 -0.25 -1.67 16 8 C 0.60 9.91 7.66 -12.83 -0.10 9.82 16 9 O -0.51 -9.68 14.19 5.20 0.07 -9.60 16 10 N -0.60 -9.59 2.97 -173.95 -0.52 -10.10 16 11 C 0.09 1.20 6.32 -3.44 -0.02 1.18 16 12 C -0.12 -1.70 5.84 -26.43 -0.15 -1.85 16 13 C 0.08 1.36 2.48 -26.63 -0.07 1.30 16 14 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 15 O -0.39 -7.60 10.49 -35.23 -0.37 -7.97 16 16 C 0.04 0.72 6.97 37.26 0.26 0.98 16 17 C 0.14 3.32 5.36 -3.34 -0.02 3.30 16 18 N -0.59 -14.39 3.08 -164.16 -0.50 -14.90 16 19 C -0.26 -6.88 8.72 -15.06 -0.13 -7.02 16 20 H 0.07 1.74 6.42 -52.49 -0.34 1.40 16 21 C 0.02 0.43 5.31 -17.43 -0.09 0.34 16 22 N -0.90 -25.32 10.79 55.49 0.60 -24.72 16 23 Si 0.90 21.26 29.55 -169.99 -5.02 16.24 16 24 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 27 C 0.14 2.89 3.00 -67.53 -0.20 2.69 16 28 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 29 C 0.13 2.40 4.54 -3.70 -0.02 2.38 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.10 1.42 6.35 -51.93 -0.33 1.09 16 35 H 0.25 0.71 8.06 -52.48 -0.42 0.29 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.11 1.20 3.78 -55.13 -0.21 0.99 16 38 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 42 H 0.10 2.61 6.25 -51.93 -0.32 2.29 16 43 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 45 H 0.11 2.32 6.81 -51.93 -0.35 1.97 16 46 H 0.08 1.45 7.38 -51.93 -0.38 1.06 16 LS Contribution 360.56 15.07 5.43 5.43 Total: -1.00 -31.65 360.56 -7.40 -39.05 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -6.57 Total: 2.30 kcal Atomic # 6 Polarization: 12.59 SS G_CDS: -0.43 Total: 12.15 kcal Atomic # 7 Polarization: -55.10 SS G_CDS: -0.55 Total: -55.64 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: -0.26 Total: -19.54 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.65 -7.40 -39.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074336413.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.686 kcal (2) G-P(sol) polarization free energy of solvation -31.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds