Wall clock time and date at job start Tue Mar 31 2020 18:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50698 * 109.47482 * 2 1 4 4 O 1.33495 * 126.83123 * 270.17683 * 3 2 1 5 5 N 1.20666 * 113.15566 * 180.30619 * 4 3 2 6 6 C 1.30016 * 112.29967 * 359.71476 * 5 4 3 7 7 C 1.37360 * 126.82777 * 89.99509 * 3 2 1 8 8 C 1.47400 * 128.56584 * 0.02562 * 7 3 2 9 9 O 1.21611 * 119.99930 * 31.98333 * 8 7 3 10 10 N 1.34778 * 119.99822 * 211.99386 * 8 7 3 11 11 C 1.46838 * 120.41039 * 4.60779 * 10 8 7 12 12 C 1.53371 * 109.24592 * 127.78067 * 11 10 8 13 13 C 1.52784 * 108.80822 * 53.83587 * 12 11 10 14 14 H 1.09004 * 108.95250 * 56.90997 * 13 12 11 15 15 O 1.42607 * 111.11670 * 177.43990 * 13 12 11 16 16 C 1.43142 * 113.63164 * 183.62652 * 15 13 12 17 17 C 1.53196 * 109.73304 * 298.30696 * 16 15 13 18 18 N 1.47351 * 108.80289 * 51.21881 * 17 16 15 19 19 C 1.36939 * 121.30201 * 129.73906 * 18 17 16 20 20 H 1.07998 * 120.00069 * 210.17042 * 19 18 17 21 21 C 1.38809 * 119.99968 * 30.16926 * 19 18 17 22 22 N 1.31630 * 120.00308 * 10.41975 * 21 19 18 23 23 Si 1.86798 * 120.00057 * 190.41774 * 21 19 18 24 24 H 1.48498 * 109.47068 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47200 * 120.00007 * 23 21 19 26 26 H 1.48497 * 109.47321 * 240.00089 * 23 21 19 27 27 C 1.46874 * 117.39203 * 309.76036 * 18 17 16 28 28 H 1.09003 * 109.65621 * 291.63644 * 27 18 17 29 29 C 1.47134 * 120.40438 * 184.63779 * 10 8 7 30 30 H 1.09001 * 109.47532 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46909 * 300.00007 * 1 2 3 32 32 H 1.09002 * 109.47151 * 60.00130 * 1 2 3 33 33 H 1.09003 * 109.47377 * 240.00212 * 2 1 3 34 34 H 1.09003 * 109.47484 * 120.00297 * 2 1 3 35 35 H 1.07996 * 127.33312 * 179.97438 * 6 5 4 36 36 H 1.09006 * 109.50611 * 7.85168 * 11 10 8 37 37 H 1.08997 * 109.54635 * 247.73866 * 11 10 8 38 38 H 1.09002 * 109.57829 * 294.03801 * 12 11 10 39 39 H 1.08998 * 109.57553 * 173.63348 * 12 11 10 40 40 H 1.09001 * 109.42910 * 178.23104 * 16 15 13 41 41 H 1.09000 * 109.38524 * 58.35837 * 16 15 13 42 42 H 1.09010 * 109.58322 * 291.42402 * 17 16 15 43 43 H 1.09000 * 109.58711 * 171.01741 * 17 16 15 44 44 H 0.96991 * 119.99977 * 180.02562 * 22 21 19 45 45 H 1.08996 * 109.72568 * 113.53296 * 29 10 8 46 46 H 1.08999 * 109.72615 * 352.86064 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2961 2.1763 -1.0685 5 7 2.6934 3.2794 -0.7832 6 6 2.7611 3.4623 0.5022 7 6 2.3068 2.1970 1.0995 8 6 2.1832 1.8465 2.5258 9 8 2.3703 0.7010 2.8889 10 7 1.8627 2.7954 3.4277 11 6 1.5361 4.1580 2.9886 12 6 0.1915 4.5763 3.5964 13 6 0.2552 4.3863 5.1110 14 1 1.0909 4.9643 5.5056 15 8 -0.9530 4.8172 5.7341 16 6 -0.9210 4.7397 7.1631 17 6 -0.7212 3.2843 7.5978 18 7 0.4386 2.7288 6.8785 19 6 1.4436 2.0787 7.5437 20 1 2.4522 2.1064 7.1586 21 6 1.1660 1.3841 8.7130 22 7 -0.0825 1.1751 9.0739 23 14 2.5643 0.7459 9.7746 24 1 3.8631 1.1089 9.1531 25 1 2.4755 1.3523 11.1272 26 1 2.4658 -0.7316 9.8871 27 6 0.4747 2.9000 5.4202 28 1 -0.3104 2.2994 4.9609 29 6 1.8364 2.4788 4.8643 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 3.0829 4.3532 1.0210 36 1 1.4676 4.1834 1.9010 37 1 2.3149 4.8446 3.3204 38 1 -0.6045 3.9566 3.1836 39 1 -0.0025 5.6242 3.3675 40 1 -1.8619 5.1129 7.5676 41 1 -0.0980 5.3468 7.5400 42 1 -1.6126 2.7052 7.3562 43 1 -0.5380 3.2456 8.6716 44 1 -0.2764 0.6901 9.8911 45 1 2.6280 3.0260 5.3761 46 1 1.9770 1.4075 5.0076 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074351413.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:41 Heat of formation + Delta-G solvation = 17.534577 kcal Electronic energy + Delta-G solvation = -30630.492142 eV Core-core repulsion = 26524.798765 eV Total energy + Delta-G solvation = -4105.693378 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 4.18 seconds Orbital eigenvalues (eV) -45.09256 -40.16671 -38.58723 -36.21362 -34.89772 -34.73851 -33.89176 -31.82246 -31.44437 -30.49767 -29.85217 -27.26401 -25.93154 -24.37152 -24.22916 -23.86029 -22.34776 -21.69448 -21.13489 -19.75676 -19.04521 -17.93881 -17.70882 -16.89605 -16.72885 -15.97341 -15.47416 -15.29799 -15.12263 -14.83928 -14.54528 -14.38954 -13.93576 -13.83107 -13.70753 -13.54881 -13.12247 -12.92792 -12.82047 -12.67714 -12.53196 -12.04697 -11.91565 -11.75553 -11.38696 -11.14670 -11.03882 -11.02223 -10.93661 -10.67922 -10.44258 -10.30942 -10.21985 -10.07736 -9.90281 -9.64605 -9.56208 -9.02094 -8.59042 -8.46085 -6.73394 -5.87388 -3.37207 0.99137 1.61756 2.60680 2.88458 3.17398 3.32327 3.40631 3.41892 3.99643 4.13586 4.21843 4.38950 4.48687 4.66823 4.80288 4.91860 4.95435 5.07809 5.15275 5.25500 5.31801 5.35865 5.44286 5.46661 5.59087 5.63364 5.63997 5.69043 5.80804 5.85540 5.88163 5.98339 6.06438 6.09340 6.20310 6.29194 6.41503 6.56762 6.63268 6.81863 7.09735 7.45243 7.49430 7.67561 7.85640 7.96613 8.19402 8.30782 9.06775 9.68640 10.27535 11.20395 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013987 B = 0.003766 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.364170 B = 7433.393975 C = 8397.443463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.053 4.053 3 C 0.045 3.955 4 O 0.091 5.909 5 N -0.356 5.356 6 C 0.019 3.981 7 C -0.253 4.253 8 C 0.596 3.404 9 O -0.527 6.527 10 N -0.600 5.600 11 C 0.102 3.898 12 C -0.124 4.124 13 C 0.078 3.922 14 H 0.052 0.948 15 O -0.389 6.389 16 C 0.038 3.962 17 C 0.143 3.857 18 N -0.588 5.588 19 C -0.259 4.259 20 H 0.071 0.929 21 C 0.009 3.991 22 N -0.902 5.902 23 Si 0.905 3.095 24 H -0.276 1.276 25 H -0.288 1.288 26 H -0.288 1.288 27 C 0.137 3.863 28 H 0.038 0.962 29 C 0.125 3.875 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.092 0.908 34 H 0.116 0.884 35 H 0.203 0.797 36 H 0.090 0.910 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.040 0.960 42 H 0.028 0.972 43 H 0.096 0.904 44 H 0.255 0.745 45 H 0.075 0.925 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.761 5.008 -16.255 17.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.091 4.091 3 C -0.019 4.019 4 O 0.031 5.969 5 N -0.061 5.061 6 C -0.163 4.163 7 C -0.261 4.261 8 C 0.383 3.617 9 O -0.404 6.404 10 N -0.333 5.333 11 C -0.021 4.021 12 C -0.163 4.163 13 C 0.018 3.982 14 H 0.070 0.930 15 O -0.308 6.308 16 C -0.039 4.039 17 C 0.018 3.982 18 N -0.313 5.313 19 C -0.388 4.388 20 H 0.089 0.911 21 C -0.190 4.190 22 N -0.545 5.545 23 Si 0.734 3.266 24 H -0.201 1.201 25 H -0.215 1.215 26 H -0.215 1.215 27 C 0.029 3.971 28 H 0.056 0.944 29 C 0.004 3.996 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.110 0.890 34 H 0.134 0.866 35 H 0.220 0.780 36 H 0.108 0.892 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.059 0.941 42 H 0.046 0.954 43 H 0.114 0.886 44 H 0.065 0.935 45 H 0.093 0.907 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 1.926 5.099 -17.059 17.909 hybrid contribution 0.735 -0.434 1.695 1.898 sum 2.661 4.665 -15.364 16.276 Atomic orbital electron populations 1.21759 0.92874 1.03261 1.02698 1.20429 0.97118 0.85596 1.05971 1.24847 0.96015 0.95996 0.85012 1.84556 1.61280 1.17697 1.33377 1.73663 1.16220 0.98804 1.17453 1.26483 1.01349 0.99106 0.89392 1.22134 1.13313 0.95031 0.95576 1.16826 0.77140 0.84803 0.82939 1.90814 1.50773 1.19092 1.79753 1.48067 1.67292 1.10178 1.07751 1.22019 0.96864 0.83153 1.00077 1.21847 0.97173 1.02291 0.94956 1.22404 0.87637 0.96507 0.91676 0.92957 1.87742 1.36457 1.86353 1.20267 1.23356 1.00356 1.00163 0.80057 1.21445 0.89545 0.88227 0.98979 1.43997 1.23594 1.65038 0.98638 1.19153 0.88079 1.25569 1.06047 0.91129 1.25164 0.96123 0.97394 1.00310 1.69983 1.16788 1.43134 1.24615 0.86188 0.81642 0.78547 0.80217 1.20115 1.21502 1.21461 1.21295 0.95018 0.93195 0.87544 0.94447 1.21842 0.97930 1.03919 0.75928 0.90764 0.91898 0.92173 0.88955 0.86591 0.78047 0.89177 0.90912 0.90834 0.90138 0.90066 0.94136 0.95379 0.88614 0.93474 0.90678 0.87673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.89 37.16 0.37 -0.94 16 2 C -0.05 -0.50 6.34 -27.89 -0.18 -0.68 16 3 C 0.05 0.52 6.80 -34.63 -0.24 0.28 16 4 O 0.09 1.04 11.06 18.64 0.21 1.25 16 5 N -0.36 -4.22 12.01 31.81 0.38 -3.83 16 6 C 0.02 0.20 10.01 -14.72 -0.15 0.06 16 7 C -0.25 -3.23 5.69 -102.89 -0.59 -3.81 16 8 C 0.60 9.38 7.60 -12.53 -0.10 9.28 16 9 O -0.53 -10.01 15.10 5.27 0.08 -9.93 16 10 N -0.60 -9.14 2.98 -173.96 -0.52 -9.66 16 11 C 0.10 1.19 5.46 -3.67 -0.02 1.17 16 12 C -0.12 -1.66 5.82 -26.65 -0.16 -1.82 16 13 C 0.08 1.36 2.47 -26.64 -0.07 1.29 16 14 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 15 O -0.39 -7.49 10.49 -35.23 -0.37 -7.86 16 16 C 0.04 0.74 6.96 37.26 0.26 1.00 16 17 C 0.14 3.35 5.38 -3.48 -0.02 3.34 16 18 N -0.59 -14.24 3.03 -164.35 -0.50 -14.74 16 19 C -0.26 -6.76 8.83 -15.06 -0.13 -6.90 16 20 H 0.07 1.79 6.32 -52.49 -0.33 1.46 16 21 C 0.01 0.25 5.08 -17.43 -0.09 0.17 16 22 N -0.90 -25.39 11.06 55.49 0.61 -24.78 16 23 Si 0.90 21.20 29.57 -169.99 -5.03 16.17 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 26 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 27 C 0.14 2.83 3.03 -67.53 -0.20 2.63 16 28 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 29 C 0.12 2.34 4.52 -3.70 -0.02 2.33 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.12 1.31 6.82 -51.93 -0.35 0.95 16 35 H 0.20 1.57 7.01 -52.49 -0.37 1.21 16 36 H 0.09 0.88 4.29 -51.93 -0.22 0.66 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 39 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 41 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.03 0.71 8.14 -51.92 -0.42 0.29 16 43 H 0.10 2.44 6.27 -51.93 -0.33 2.11 16 44 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 45 H 0.08 1.40 7.36 -51.93 -0.38 1.02 16 46 H 0.11 2.28 6.81 -51.93 -0.35 1.93 16 LS Contribution 361.39 15.07 5.45 5.45 Total: -1.00 -31.21 361.39 -7.55 -38.76 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -6.55 Total: 1.78 kcal Atomic # 6 Polarization: 8.70 SS G_CDS: -1.32 Total: 7.39 kcal Atomic # 7 Polarization: -52.99 SS G_CDS: -0.02 Total: -53.01 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: -0.08 Total: -16.53 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.17 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.21 -7.55 -38.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074351413.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.294 kcal (2) G-P(sol) polarization free energy of solvation -31.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.18 seconds