Wall clock time and date at job start Tue Mar 31 2020 22:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47260 * 2 1 4 4 C 1.50693 * 109.47318 * 120.00704 * 2 1 3 5 5 O 1.33654 * 125.80166 * 300.32284 * 4 2 1 6 6 C 1.34212 * 110.91258 * 180.13725 * 5 4 2 7 7 C 1.34178 * 109.12070 * 359.58196 * 6 5 4 8 8 C 1.36414 * 125.80470 * 119.99936 * 4 2 1 9 9 C 1.47377 * 127.19348 * 0.02562 * 8 4 2 10 10 O 1.21621 * 119.99590 * 0.02562 * 9 8 4 11 11 N 1.34779 * 120.00415 * 180.02562 * 9 8 4 12 12 C 1.46504 * 119.99955 * 179.97438 * 11 9 8 13 13 C 1.53931 * 113.73748 * 251.72718 * 12 11 9 14 14 N 1.47951 * 86.18115 * 221.92480 * 13 12 11 15 15 C 1.46905 * 110.99960 * 137.58440 * 14 13 12 16 16 C 1.50692 * 109.47034 * 70.63912 * 15 14 13 17 17 O 1.21287 * 120.00494 * 359.97438 * 16 15 14 18 18 N 1.34778 * 119.99608 * 180.02562 * 16 15 14 19 19 C 1.37103 * 119.99990 * 180.02562 * 18 16 15 20 20 H 1.08004 * 119.99494 * 359.97438 * 19 18 16 21 21 C 1.38953 * 120.00384 * 179.97438 * 19 18 16 22 22 N 1.31409 * 120.00155 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 119.99758 * 359.97438 * 21 19 18 24 24 H 1.48507 * 109.47128 * 89.99909 * 23 21 19 25 25 H 1.48498 * 109.47167 * 210.00004 * 23 21 19 26 26 H 1.48508 * 109.47086 * 330.00185 * 23 21 19 27 27 C 1.47963 * 90.76535 * 24.68911 * 14 13 12 28 28 H 1.08999 * 109.46688 * 299.99522 * 1 2 3 29 29 H 1.08996 * 109.47203 * 59.99181 * 1 2 3 30 30 H 1.09003 * 109.47006 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46688 * 240.00478 * 2 1 3 32 32 H 1.08999 * 109.46422 * 60.00321 * 3 2 1 33 33 H 1.08990 * 109.47283 * 180.02562 * 3 2 1 34 34 H 1.08995 * 109.47224 * 300.00803 * 3 2 1 35 35 H 1.08002 * 125.44314 * 179.85523 * 6 5 4 36 36 H 1.08003 * 127.02366 * 180.24497 * 7 6 5 37 37 H 0.96993 * 119.99586 * 359.97438 * 11 9 8 38 38 H 1.09002 * 112.93861 * 23.43726 * 12 11 9 39 39 H 1.09002 * 113.75610 * 336.24324 * 13 12 11 40 40 H 1.08997 * 113.75863 * 107.59985 * 13 12 11 41 41 H 1.09007 * 109.46971 * 190.63908 * 15 14 13 42 42 H 1.09000 * 109.47051 * 310.63668 * 15 14 13 43 43 H 0.96996 * 120.00596 * 359.97438 * 18 16 15 44 44 H 0.97000 * 119.99689 * 179.97438 * 22 21 19 45 45 H 1.09001 * 113.75954 * 220.99261 * 27 14 13 46 46 H 1.09000 * 113.85745 * 89.64110 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 1.2303 5 8 1.7771 -0.3601 2.4946 6 6 2.3760 -1.1987 3.3544 7 6 3.0401 -2.1371 2.6626 8 6 2.8199 -1.8243 1.2430 9 6 3.3411 -2.5603 0.0773 10 8 3.0757 -2.1832 -1.0481 11 7 4.1117 -3.6511 0.2585 12 6 4.6292 -4.3830 -0.9004 13 6 3.9569 -5.7500 -1.1206 14 7 5.3146 -6.2597 -1.4133 15 6 5.5338 -7.5674 -0.7809 16 6 4.7069 -8.6113 -1.4862 17 8 4.0038 -8.2969 -2.4231 18 7 4.7479 -9.8942 -1.0751 19 6 3.9960 -10.8441 -1.7170 20 1 3.3706 -10.5642 -2.5519 21 6 4.0386 -12.1669 -1.2936 22 7 3.3175 -13.0772 -1.9086 23 14 5.1209 -12.6510 0.1499 24 1 4.3461 -12.5322 1.4112 25 1 5.5758 -14.0542 -0.0213 26 1 6.3011 -11.7514 0.2073 27 6 5.9172 -5.1739 -0.6087 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.6767 1.9562 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8899 35 1 2.3274 -1.1317 4.4312 36 1 3.6184 -2.9553 3.0661 37 1 4.3236 -3.9515 1.1560 38 1 4.6851 -3.7697 -1.7998 39 1 3.5144 -6.1722 -0.2183 40 1 3.2839 -5.7755 -1.9776 41 1 6.5890 -7.8321 -0.8498 42 1 5.2394 -7.5179 0.2674 43 1 5.3098 -10.1457 -0.3256 44 1 3.3476 -14.0006 -1.6132 45 1 6.8106 -4.7391 -1.0569 46 1 6.0490 -5.4260 0.4435 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692270021.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:33 Heat of formation + Delta-G solvation = -19.360101 kcal Electronic energy + Delta-G solvation = -28218.401914 eV Core-core repulsion = 24111.108663 eV Total energy + Delta-G solvation = -4107.293251 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.94755 -40.49031 -39.01443 -37.80632 -35.84716 -34.24742 -33.88729 -33.02048 -31.69864 -29.98324 -29.36851 -27.51048 -26.09510 -25.84820 -24.29717 -22.87423 -22.80290 -20.88410 -20.51215 -19.60201 -19.38551 -18.36006 -18.03951 -16.61383 -16.53841 -16.22595 -16.12647 -15.42833 -15.22517 -15.04050 -14.95290 -14.80851 -14.22744 -14.13987 -13.62559 -13.45913 -13.42245 -13.26603 -13.04838 -12.84065 -12.62088 -12.53916 -12.32067 -12.17914 -11.80867 -11.62399 -11.57650 -11.33332 -11.29544 -11.21004 -10.67224 -10.61447 -10.15728 -10.05650 -9.98583 -9.58395 -9.22106 -8.91346 -8.81446 -8.39298 -8.19069 -6.32002 -3.83507 1.07805 1.70238 2.44528 2.98336 3.00624 3.04295 3.13142 3.13721 3.71066 3.93648 4.06059 4.08606 4.37423 4.43582 4.50223 4.62860 4.72482 4.75399 4.80930 4.99266 5.09543 5.13977 5.20883 5.26564 5.28279 5.36434 5.46240 5.48692 5.49478 5.57536 5.60425 5.63396 5.75205 5.84629 5.87582 5.89372 5.92693 6.00706 6.17457 6.34169 6.48870 6.69920 7.01706 7.32442 7.56474 8.05082 8.12932 8.58546 8.94027 9.40937 9.81385 10.81143 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.019456 B = 0.002077 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.814924 B =13474.686609 C =13685.613597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.037 4.037 3 C -0.145 4.145 4 C 0.092 3.908 5 O -0.173 6.173 6 C -0.039 4.039 7 C -0.189 4.189 8 C -0.247 4.247 9 C 0.593 3.407 10 O -0.537 6.537 11 N -0.713 5.713 12 C 0.116 3.884 13 C 0.009 3.991 14 N -0.448 5.448 15 C 0.010 3.990 16 C 0.452 3.548 17 O -0.558 6.558 18 N -0.591 5.591 19 C -0.304 4.304 20 H 0.120 0.880 21 C 0.041 3.959 22 N -0.881 5.881 23 Si 0.880 3.120 24 H -0.271 1.271 25 H -0.276 1.276 26 H -0.270 1.270 27 C -0.009 4.009 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.133 0.867 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.208 0.792 36 H 0.156 0.844 37 H 0.399 0.601 38 H 0.127 0.873 39 H 0.069 0.931 40 H 0.102 0.898 41 H 0.093 0.907 42 H 0.055 0.945 43 H 0.370 0.630 44 H 0.273 0.727 45 H 0.097 0.903 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.765 26.721 14.115 30.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.055 4.055 3 C -0.203 4.203 4 C 0.038 3.962 5 O -0.069 6.069 6 C -0.105 4.105 7 C -0.208 4.208 8 C -0.251 4.251 9 C 0.381 3.619 10 O -0.416 6.416 11 N -0.363 5.363 12 C 0.011 3.989 13 C -0.121 4.121 14 N -0.171 5.171 15 C -0.122 4.122 16 C 0.237 3.763 17 O -0.439 6.439 18 N -0.231 5.231 19 C -0.433 4.433 20 H 0.137 0.863 21 C -0.162 4.162 22 N -0.521 5.521 23 Si 0.706 3.294 24 H -0.197 1.197 25 H -0.201 1.201 26 H -0.195 1.195 27 C -0.139 4.139 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.151 0.849 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.224 0.776 36 H 0.174 0.826 37 H 0.234 0.766 38 H 0.145 0.855 39 H 0.087 0.913 40 H 0.120 0.880 41 H 0.112 0.888 42 H 0.073 0.927 43 H 0.202 0.798 44 H 0.084 0.916 45 H 0.116 0.884 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.068 27.073 12.048 29.652 hybrid contribution 0.967 -1.265 2.819 3.237 sum 2.035 25.809 14.867 29.854 Atomic orbital electron populations 1.21848 0.93272 1.02700 1.02567 1.20368 0.96755 0.96397 0.91994 1.21839 1.01543 0.94310 1.02581 1.22882 0.95238 0.94034 0.84025 1.83756 1.59315 1.48587 1.15196 1.23865 0.99100 0.91953 0.95581 1.22856 1.04578 1.01997 0.91408 1.21157 1.09097 1.01051 0.93807 1.17220 0.77640 0.79590 0.87411 1.90729 1.58781 1.67688 1.24424 1.45834 1.52041 1.28655 1.09813 1.23148 0.93401 0.92216 0.90131 1.24339 0.93528 0.92136 1.02091 1.68393 1.06431 0.99418 1.42847 1.22493 1.01570 0.91676 0.96486 1.19563 0.86601 0.82958 0.87173 1.90577 1.43274 1.80274 1.29809 1.42210 1.42133 1.07482 1.31289 1.19432 1.22009 0.86875 1.14980 0.86272 1.25044 0.97566 0.95530 0.98085 1.69621 1.39682 1.02275 1.40511 0.86671 0.80633 0.79155 0.82910 1.19699 1.20135 1.19507 1.24446 0.98392 0.93238 0.97793 0.92305 0.91233 0.92073 0.84939 0.92307 0.92231 0.91259 0.77593 0.82606 0.76611 0.85540 0.91254 0.87992 0.88838 0.92733 0.79766 0.91609 0.88435 0.91087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.18 37.16 0.34 -0.82 16 2 C -0.04 -0.35 3.25 -91.77 -0.30 -0.64 16 3 C -0.15 -1.08 9.18 37.16 0.34 -0.74 16 4 C 0.09 0.93 5.88 -34.97 -0.21 0.73 16 5 O -0.17 -1.57 10.52 7.66 0.08 -1.49 16 6 C -0.04 -0.27 12.03 29.30 0.35 0.08 16 7 C -0.19 -1.47 10.60 -37.45 -0.40 -1.87 16 8 C -0.25 -2.63 6.31 -103.28 -0.65 -3.28 16 9 C 0.59 7.38 7.81 -12.54 -0.10 7.28 16 10 O -0.54 -8.23 14.10 5.26 0.07 -8.15 16 11 N -0.71 -7.49 5.36 -56.04 -0.30 -7.79 16 12 C 0.12 1.42 4.43 -69.64 -0.31 1.11 16 13 C 0.01 0.14 6.56 -2.77 -0.02 0.12 16 14 N -0.45 -7.07 5.95 -239.93 -1.43 -8.49 16 15 C 0.01 0.17 5.31 -4.98 -0.03 0.14 16 16 C 0.45 10.30 7.59 -10.99 -0.08 10.22 16 17 O -0.56 -15.14 15.12 5.55 0.08 -15.06 16 18 N -0.59 -14.10 5.09 -10.96 -0.06 -14.16 16 19 C -0.30 -8.64 10.16 -14.93 -0.15 -8.79 16 20 H 0.12 3.88 7.39 -52.48 -0.39 3.50 16 21 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 22 N -0.88 -25.81 13.96 55.50 0.77 -25.04 16 23 Si 0.88 19.28 27.74 -169.99 -4.71 14.57 16 24 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 25 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 26 H -0.27 -5.37 6.52 56.52 0.37 -5.00 16 27 C -0.01 -0.10 7.73 -2.77 -0.02 -0.12 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.13 1.50 5.52 -51.93 -0.29 1.21 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.21 0.59 8.06 -52.49 -0.42 0.16 16 36 H 0.16 0.81 7.74 -52.48 -0.41 0.40 16 37 H 0.40 3.13 7.90 -40.82 -0.32 2.80 16 38 H 0.13 1.73 7.46 -51.93 -0.39 1.34 16 39 H 0.07 1.04 7.78 -51.93 -0.40 0.63 16 40 H 0.10 1.85 8.09 -51.93 -0.42 1.43 16 41 H 0.09 1.36 8.14 -51.92 -0.42 0.93 16 42 H 0.05 0.75 7.69 -51.93 -0.40 0.35 16 43 H 0.37 7.68 5.76 -40.82 -0.24 7.45 16 44 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 45 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.07 0.62 7.77 -51.93 -0.40 0.22 16 LS Contribution 384.69 15.07 5.80 5.80 Total: -1.00 -35.61 384.69 -7.64 -43.25 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: -6.63 Total: 12.11 kcal Atomic # 6 Polarization: 5.77 SS G_CDS: -1.32 Total: 4.45 kcal Atomic # 7 Polarization: -54.47 SS G_CDS: -1.01 Total: -55.47 kcal Atomic # 8 Polarization: -24.93 SS G_CDS: 0.24 Total: -24.70 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -4.71 Total: 14.57 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.61 -7.64 -43.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692270021.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.890 kcal (2) G-P(sol) polarization free energy of solvation -35.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds