Wall clock time and date at job start Tue Mar 31 2020 19:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46795 * 2 1 4 4 N 1.46505 * 109.46884 * 180.02562 * 3 2 1 5 5 C 1.36932 * 119.99999 * 265.31873 * 4 3 2 6 6 H 1.08001 * 120.00199 * 181.57303 * 5 4 3 7 7 C 1.38816 * 120.00278 * 1.58171 * 5 4 3 8 8 N 1.31617 * 119.99852 * 33.40920 * 7 5 4 9 9 Si 1.86796 * 119.99987 * 213.41481 * 7 5 4 10 10 H 1.48502 * 109.47123 * 94.99816 * 9 7 5 11 11 H 1.48496 * 109.46870 * 214.99424 * 9 7 5 12 12 H 1.48499 * 109.47379 * 334.99569 * 9 7 5 13 13 C 1.46502 * 119.99645 * 85.32551 * 4 3 2 14 14 C 1.53008 * 109.46541 * 269.99449 * 13 4 3 15 15 C 1.50701 * 109.46349 * 180.02562 * 14 13 4 16 16 O 1.21281 * 120.00781 * 0.02562 * 15 14 13 17 17 N 1.34778 * 119.99559 * 179.97438 * 15 14 13 18 18 C 1.39930 * 120.00066 * 184.67810 * 17 15 14 19 19 C 1.38887 * 120.06902 * 326.66435 * 18 17 15 20 20 C 1.38092 * 119.93018 * 180.02562 * 19 18 17 21 21 C 1.38302 * 120.07072 * 359.97438 * 20 19 18 22 22 C 1.38268 * 120.14052 * 0.02562 * 21 20 19 23 23 N 1.48004 * 119.96644 * 179.97438 * 22 21 20 24 24 O 1.21810 * 120.00170 * 6.07351 * 23 22 21 25 25 O 1.21799 * 120.00474 * 186.07476 * 23 22 21 26 26 C 1.38142 * 120.06836 * 359.71906 * 22 21 20 27 27 C 1.50698 * 120.03582 * 180.29969 * 26 22 21 28 28 H 1.09001 * 109.46630 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46683 * 299.99330 * 1 2 3 30 30 H 1.08999 * 109.47406 * 59.99970 * 1 2 3 31 31 H 1.09000 * 109.46932 * 240.00996 * 2 1 3 32 32 H 1.08999 * 109.47406 * 120.00030 * 2 1 3 33 33 H 1.09000 * 109.47341 * 60.00265 * 3 2 1 34 34 H 1.08999 * 109.47168 * 300.00175 * 3 2 1 35 35 H 0.96998 * 120.00281 * 180.02562 * 8 7 5 36 36 H 1.09006 * 109.46791 * 150.00158 * 13 4 3 37 37 H 1.08991 * 109.47307 * 29.99657 * 13 4 3 38 38 H 1.08996 * 109.46816 * 60.00355 * 14 13 4 39 39 H 1.08991 * 109.47489 * 300.00095 * 14 13 4 40 40 H 0.97002 * 120.00012 * 4.40724 * 17 15 14 41 41 H 1.07999 * 120.03934 * 0.02785 * 19 18 17 42 42 H 1.08003 * 119.96589 * 180.02562 * 20 19 18 43 43 H 1.07996 * 119.93340 * 180.02562 * 21 20 19 44 44 H 1.08998 * 109.47150 * 277.64439 * 27 26 22 45 45 H 1.08998 * 109.46886 * 37.64143 * 27 26 22 46 46 H 1.08992 * 109.47174 * 157.63847 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1902 1.5392 1.1810 6 1 5.2699 1.5648 1.1787 7 6 3.4971 1.6040 2.3820 8 7 2.3594 0.9569 2.5210 9 14 4.1789 2.6098 3.8007 10 1 3.5704 3.9644 3.7846 11 1 3.8556 1.9372 5.0846 12 1 5.6526 2.7275 3.6609 13 6 4.2369 1.3394 -1.2655 14 6 4.4918 -0.1344 -1.5883 15 6 5.2453 -0.2405 -2.8892 16 8 5.5489 0.7636 -3.4979 17 7 5.5826 -1.4513 -3.3756 18 6 6.3660 -1.5476 -4.5310 19 6 6.2432 -0.5972 -5.5363 20 6 7.0174 -0.6953 -6.6756 21 6 7.9147 -1.7383 -6.8160 22 6 8.0394 -2.6861 -5.8170 23 7 9.0005 -3.8009 -5.9714 24 8 9.7590 -3.8237 -6.9243 25 8 9.0332 -4.6958 -5.1458 26 6 7.2716 -2.5906 -4.6726 27 6 7.4130 -3.6202 -3.5813 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3632 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 1.8749 1.0025 3.3600 36 1 5.1894 1.8621 -1.1778 37 1 3.6475 1.7896 -2.0641 38 1 3.5394 -0.6571 -1.6759 39 1 5.0813 -0.5846 -0.7897 40 1 5.2856 -2.2559 -2.9226 41 1 5.5430 0.2178 -5.4272 42 1 6.9226 0.0436 -7.4575 43 1 8.5194 -1.8127 -7.7077 44 1 6.8174 -4.4983 -3.8309 45 1 8.4603 -3.9067 -3.4856 46 1 7.0636 -3.2003 -2.6381 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058909239.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:47 Heat of formation + Delta-G solvation = 14.504206 kcal Electronic energy + Delta-G solvation = -28725.618939 eV Core-core repulsion = 24619.794155 eV Total energy + Delta-G solvation = -4105.824784 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 2.23 seconds Orbital eigenvalues (eV) -42.46347 -40.92530 -38.97360 -36.86142 -36.46440 -35.22740 -33.27405 -32.50865 -32.01809 -31.00998 -29.34791 -27.88942 -26.22345 -25.59960 -24.68264 -22.98957 -22.25392 -21.30857 -20.30523 -20.05941 -19.26009 -18.79599 -17.80482 -17.49622 -16.89208 -16.50725 -16.34876 -15.99546 -15.16925 -14.84493 -14.31307 -14.21270 -13.98339 -13.85127 -13.52095 -13.19961 -12.94036 -12.81673 -12.70261 -12.62792 -12.40634 -12.11997 -11.77385 -11.61032 -11.50922 -11.32717 -11.10573 -10.96186 -10.87880 -10.81891 -10.66268 -10.44614 -10.12596 -9.99801 -9.90971 -9.73965 -9.60923 -9.30482 -8.65709 -8.33767 -7.07789 -5.94494 -3.11745 -0.35350 0.57418 1.14577 1.18032 2.46525 2.75770 3.07046 3.35795 3.45483 3.47141 4.04805 4.19958 4.35995 4.41643 4.59085 4.66661 4.89177 4.99847 5.13246 5.17564 5.24991 5.46266 5.48785 5.57602 5.61619 5.69627 5.73191 5.77979 5.83476 6.05037 6.11934 6.18824 6.19274 6.39998 6.41493 6.52009 6.58011 6.73593 6.82956 7.03124 7.07767 7.13846 7.47244 7.59607 7.66642 7.92659 7.96574 8.22646 9.11917 9.77505 10.22043 11.11973 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017309 B = 0.002377 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.266106 B =11775.877141 C =12137.069438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.128 4.128 3 C 0.164 3.836 4 N -0.595 5.595 5 C -0.263 4.263 6 H 0.076 0.924 7 C 0.008 3.992 8 N -0.880 5.880 9 Si 0.881 3.119 10 H -0.289 1.289 11 H -0.295 1.295 12 H -0.280 1.280 13 C 0.170 3.830 14 C -0.164 4.164 15 C 0.520 3.480 16 O -0.521 6.521 17 N -0.677 5.677 18 C 0.155 3.845 19 C -0.071 4.071 20 C -0.105 4.105 21 C -0.074 4.074 22 C -0.032 4.032 23 N 0.035 4.965 24 O -0.170 6.170 25 O -0.159 6.159 26 C -0.051 4.051 27 C -0.132 4.132 28 H 0.033 0.967 29 H 0.052 0.948 30 H 0.032 0.968 31 H 0.020 0.980 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.007 0.993 35 H 0.253 0.747 36 H 0.054 0.946 37 H 0.047 0.953 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.416 0.584 41 H 0.162 0.838 42 H 0.150 0.850 43 H 0.152 0.848 44 H 0.089 0.911 45 H 0.101 0.899 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.539 -7.380 -15.913 18.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.167 4.167 3 C 0.039 3.961 4 N -0.314 5.314 5 C -0.391 4.391 6 H 0.094 0.906 7 C -0.190 4.190 8 N -0.524 5.524 9 Si 0.711 3.289 10 H -0.216 1.216 11 H -0.222 1.222 12 H -0.206 1.206 13 C 0.041 3.959 14 C -0.207 4.207 15 C 0.310 3.690 16 O -0.396 6.396 17 N -0.324 5.324 18 C 0.058 3.942 19 C -0.091 4.091 20 C -0.124 4.124 21 C -0.094 4.094 22 C -0.116 4.116 23 N 0.551 4.449 24 O -0.383 6.383 25 O -0.374 6.374 26 C -0.055 4.055 27 C -0.189 4.189 28 H 0.053 0.947 29 H 0.071 0.929 30 H 0.051 0.949 31 H 0.038 0.962 32 H 0.112 0.888 33 H 0.107 0.893 34 H 0.025 0.975 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.065 0.935 38 H 0.113 0.887 39 H 0.116 0.884 40 H 0.253 0.747 41 H 0.180 0.820 42 H 0.167 0.833 43 H 0.169 0.831 44 H 0.107 0.893 45 H 0.119 0.881 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.150 -6.067 -16.010 17.617 hybrid contribution 0.442 -0.429 0.953 1.134 sum 4.592 -6.496 -15.057 17.030 Atomic orbital electron populations 1.21644 0.98404 0.99399 1.00283 1.22137 0.93058 1.00675 1.00848 1.21005 0.81946 0.94377 0.98797 1.44369 1.01792 1.83938 1.01342 1.19222 0.91173 1.44909 0.83780 0.90606 1.24631 0.97206 1.00184 0.97013 1.70239 1.18117 1.38892 1.25191 0.86579 0.78714 0.81629 0.81996 1.21589 1.22172 1.20581 1.20538 0.96812 0.90119 0.88448 1.22927 1.00254 1.06019 0.91495 1.21866 0.78001 0.81519 0.87609 1.90639 1.53078 1.35770 1.60092 1.44007 1.51760 1.10877 1.25749 1.17448 0.92980 0.95435 0.88300 1.21921 0.98443 0.98437 0.90305 1.21110 0.95376 0.97566 0.98381 1.21005 0.98160 0.92106 0.98146 1.20608 0.98714 0.92696 0.99570 1.43541 1.00376 1.01423 0.99556 1.94535 1.37152 1.83741 1.22869 1.94479 1.75909 1.29962 1.37015 1.19552 0.92813 0.98204 0.94921 1.21231 1.05978 0.96446 0.95208 0.94748 0.92858 0.94905 0.96174 0.88796 0.89263 0.97517 0.93658 0.92741 0.93478 0.88656 0.88358 0.74671 0.82043 0.83254 0.83072 0.89258 0.88093 0.90816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 9.91 37.16 0.37 -2.06 16 2 C -0.13 -2.56 5.71 -26.73 -0.15 -2.71 16 3 C 0.16 3.61 4.94 -4.04 -0.02 3.59 16 4 N -0.59 -13.45 2.53 -173.23 -0.44 -13.89 16 5 C -0.26 -6.62 9.65 -15.06 -0.15 -6.77 16 6 H 0.08 1.91 8.01 -52.49 -0.42 1.49 16 7 C 0.01 0.21 4.78 -17.43 -0.08 0.13 16 8 N -0.88 -22.86 9.06 55.49 0.50 -22.35 16 9 Si 0.88 20.54 29.66 -169.99 -5.04 15.50 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 C 0.17 3.21 5.00 -4.04 -0.02 3.19 16 14 C -0.16 -2.50 5.93 -27.88 -0.17 -2.66 16 15 C 0.52 7.11 7.68 -10.98 -0.08 7.03 16 16 O -0.52 -8.41 13.31 5.56 0.07 -8.33 16 17 N -0.68 -7.19 4.77 -9.86 -0.05 -7.23 16 18 C 0.16 1.68 6.31 -83.69 -0.53 1.15 16 19 C -0.07 -0.74 8.71 -39.39 -0.34 -1.08 16 20 C -0.11 -0.87 10.04 -39.61 -0.40 -1.27 16 21 C -0.07 -0.67 9.55 -39.55 -0.38 -1.05 16 22 C -0.03 -0.35 6.83 -79.98 -0.55 -0.89 16 23 N 0.03 0.43 4.45 33.95 0.15 0.58 16 24 O -0.17 -2.20 18.46 -29.46 -0.54 -2.75 16 25 O -0.16 -2.01 15.37 -29.46 -0.45 -2.46 16 26 C -0.05 -0.53 5.90 -104.43 -0.62 -1.15 16 27 C -0.13 -1.19 8.26 36.00 0.30 -0.89 16 28 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.02 0.37 6.02 -51.93 -0.31 0.05 16 32 H 0.09 2.20 6.57 -51.93 -0.34 1.86 16 33 H 0.09 2.23 5.75 -51.93 -0.30 1.93 16 34 H 0.01 0.14 7.96 -51.93 -0.41 -0.28 16 35 H 0.25 6.48 8.31 -40.82 -0.34 6.14 16 36 H 0.05 1.08 8.00 -51.93 -0.42 0.67 16 37 H 0.05 0.87 7.89 -51.93 -0.41 0.46 16 38 H 0.10 1.40 5.98 -51.93 -0.31 1.09 16 39 H 0.10 1.55 8.14 -51.93 -0.42 1.12 16 40 H 0.42 3.38 7.63 -40.82 -0.31 3.06 16 41 H 0.16 1.84 6.09 -52.49 -0.32 1.52 16 42 H 0.15 0.82 8.06 -52.48 -0.42 0.39 16 43 H 0.15 1.11 7.62 -52.49 -0.40 0.71 16 44 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.10 0.99 5.92 -51.93 -0.31 0.69 16 46 H 0.07 0.59 6.78 -51.93 -0.35 0.24 16 LS Contribution 375.44 15.07 5.66 5.66 Total: -1.00 -28.47 375.44 -9.24 -37.70 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -6.28 Total: 3.03 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: -2.81 Total: -5.45 kcal Atomic # 7 Polarization: -43.07 SS G_CDS: 0.17 Total: -42.90 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: -0.92 Total: -13.54 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.04 Total: 15.50 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -28.47 -9.24 -37.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058909239.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.209 kcal (2) G-P(sol) polarization free energy of solvation -28.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.23 seconds