Wall clock time and date at job start Tue Mar 31 2020 19:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46795 * 2 1 4 4 N 1.46505 * 109.46884 * 180.02562 * 3 2 1 5 5 C 1.36932 * 119.99999 * 265.31873 * 4 3 2 6 6 H 1.08001 * 120.00199 * 181.57303 * 5 4 3 7 7 C 1.38816 * 120.00278 * 1.58171 * 5 4 3 8 8 N 1.31617 * 119.99852 * 33.40920 * 7 5 4 9 9 Si 1.86796 * 119.99987 * 213.41481 * 7 5 4 10 10 H 1.48502 * 109.47123 * 94.99816 * 9 7 5 11 11 H 1.48496 * 109.46870 * 214.99424 * 9 7 5 12 12 H 1.48499 * 109.47379 * 334.99569 * 9 7 5 13 13 C 1.46502 * 119.99645 * 85.32551 * 4 3 2 14 14 C 1.53008 * 109.46541 * 269.99449 * 13 4 3 15 15 C 1.50701 * 109.46349 * 180.02562 * 14 13 4 16 16 O 1.21281 * 120.00781 * 0.02562 * 15 14 13 17 17 N 1.34778 * 119.99559 * 179.97438 * 15 14 13 18 18 C 1.39930 * 120.00066 * 184.67810 * 17 15 14 19 19 C 1.38887 * 120.06902 * 326.66435 * 18 17 15 20 20 C 1.38092 * 119.93018 * 180.02562 * 19 18 17 21 21 C 1.38302 * 120.07072 * 359.97438 * 20 19 18 22 22 C 1.38268 * 120.14052 * 0.02562 * 21 20 19 23 23 N 1.48004 * 119.96644 * 179.97438 * 22 21 20 24 24 O 1.21810 * 120.00170 * 6.07351 * 23 22 21 25 25 O 1.21799 * 120.00474 * 186.07476 * 23 22 21 26 26 C 1.38142 * 120.06836 * 359.71906 * 22 21 20 27 27 C 1.50698 * 120.03582 * 180.29969 * 26 22 21 28 28 H 1.09001 * 109.46630 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46683 * 299.99330 * 1 2 3 30 30 H 1.08999 * 109.47406 * 59.99970 * 1 2 3 31 31 H 1.09000 * 109.46932 * 240.00996 * 2 1 3 32 32 H 1.08999 * 109.47406 * 120.00030 * 2 1 3 33 33 H 1.09000 * 109.47341 * 60.00265 * 3 2 1 34 34 H 1.08999 * 109.47168 * 300.00175 * 3 2 1 35 35 H 0.96998 * 120.00281 * 180.02562 * 8 7 5 36 36 H 1.09006 * 109.46791 * 150.00158 * 13 4 3 37 37 H 1.08991 * 109.47307 * 29.99657 * 13 4 3 38 38 H 1.08996 * 109.46816 * 60.00355 * 14 13 4 39 39 H 1.08991 * 109.47489 * 300.00095 * 14 13 4 40 40 H 0.97002 * 120.00012 * 4.40724 * 17 15 14 41 41 H 1.07999 * 120.03934 * 0.02785 * 19 18 17 42 42 H 1.08003 * 119.96589 * 180.02562 * 20 19 18 43 43 H 1.07996 * 119.93340 * 180.02562 * 21 20 19 44 44 H 1.08998 * 109.47150 * 277.64439 * 27 26 22 45 45 H 1.08998 * 109.46886 * 37.64143 * 27 26 22 46 46 H 1.08992 * 109.47174 * 157.63847 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1902 1.5392 1.1810 6 1 5.2699 1.5648 1.1787 7 6 3.4971 1.6040 2.3820 8 7 2.3594 0.9569 2.5210 9 14 4.1789 2.6098 3.8007 10 1 3.5704 3.9644 3.7846 11 1 3.8556 1.9372 5.0846 12 1 5.6526 2.7275 3.6609 13 6 4.2369 1.3394 -1.2655 14 6 4.4918 -0.1344 -1.5883 15 6 5.2453 -0.2405 -2.8892 16 8 5.5489 0.7636 -3.4979 17 7 5.5826 -1.4513 -3.3756 18 6 6.3660 -1.5476 -4.5310 19 6 6.2432 -0.5972 -5.5363 20 6 7.0174 -0.6953 -6.6756 21 6 7.9147 -1.7383 -6.8160 22 6 8.0394 -2.6861 -5.8170 23 7 9.0005 -3.8009 -5.9714 24 8 9.7590 -3.8237 -6.9243 25 8 9.0332 -4.6958 -5.1458 26 6 7.2716 -2.5906 -4.6726 27 6 7.4130 -3.6202 -3.5813 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3632 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 1.8749 1.0025 3.3600 36 1 5.1894 1.8621 -1.1778 37 1 3.6475 1.7896 -2.0641 38 1 3.5394 -0.6571 -1.6759 39 1 5.0813 -0.5846 -0.7897 40 1 5.2856 -2.2559 -2.9226 41 1 5.5430 0.2178 -5.4272 42 1 6.9226 0.0436 -7.4575 43 1 8.5194 -1.8127 -7.7077 44 1 6.8174 -4.4983 -3.8309 45 1 8.4603 -3.9067 -3.4856 46 1 7.0636 -3.2003 -2.6381 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058909239.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:46 Heat of formation + Delta-G solvation = 1.205949 kcal Electronic energy + Delta-G solvation = -28726.195595 eV Core-core repulsion = 24619.794155 eV Total energy + Delta-G solvation = -4106.401440 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.36584 -41.87863 -39.95163 -38.13081 -37.79329 -36.17660 -34.09862 -33.96936 -33.75177 -32.09361 -30.71646 -28.72652 -27.33529 -27.07230 -26.10319 -24.09246 -23.17150 -22.51957 -21.75353 -21.47391 -20.14544 -19.72188 -18.85430 -18.69964 -18.33725 -17.54465 -17.15130 -16.93239 -16.81453 -16.11948 -15.62592 -15.49729 -15.13024 -14.96305 -14.72972 -14.48389 -14.24188 -13.95060 -13.85883 -13.54269 -13.47646 -13.40770 -13.07327 -12.87944 -12.77138 -12.62044 -12.54023 -12.33354 -12.28710 -12.15919 -11.85322 -11.77069 -11.72164 -11.66195 -11.46697 -11.10924 -10.93182 -10.42465 -10.21146 -9.49496 -8.89283 -7.87613 -5.04107 -1.23584 -0.19220 0.26788 0.31661 1.41340 1.47319 1.54738 1.58718 1.81921 2.27397 2.55957 3.22865 3.32266 3.44712 3.50542 3.58605 3.85176 3.94482 4.06187 4.19561 4.23403 4.35783 4.42805 4.55904 4.57212 4.70230 4.74949 4.77402 4.87060 4.89162 4.96863 4.99620 4.99713 5.05692 5.07515 5.21714 5.29731 5.35871 5.49987 5.53210 5.57338 5.68898 5.88245 6.18131 6.19799 6.34164 6.51082 6.93639 7.22042 7.94704 8.34969 9.16565 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017309 B = 0.002377 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.266106 B =11775.877141 C =12137.069438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.117 4.117 3 C 0.166 3.834 4 N -0.609 5.609 5 C -0.266 4.266 6 H 0.070 0.930 7 C -0.032 4.032 8 N -0.893 5.893 9 Si 0.930 3.070 10 H -0.296 1.296 11 H -0.300 1.300 12 H -0.278 1.278 13 C 0.170 3.830 14 C -0.148 4.148 15 C 0.529 3.471 16 O -0.547 6.547 17 N -0.662 5.662 18 C 0.140 3.860 19 C -0.077 4.077 20 C -0.094 4.094 21 C -0.067 4.067 22 C -0.048 4.048 23 N 0.035 4.965 24 O -0.187 6.187 25 O -0.168 6.168 26 C -0.050 4.050 27 C -0.132 4.132 28 H 0.052 0.948 29 H 0.036 0.964 30 H 0.051 0.949 31 H 0.039 0.961 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.020 0.980 35 H 0.248 0.752 36 H 0.040 0.960 37 H 0.052 0.948 38 H 0.105 0.895 39 H 0.094 0.906 40 H 0.428 0.572 41 H 0.154 0.846 42 H 0.183 0.817 43 H 0.170 0.830 44 H 0.102 0.898 45 H 0.091 0.909 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.503 -7.848 -17.650 19.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.156 4.156 3 C 0.041 3.959 4 N -0.330 5.330 5 C -0.395 4.395 6 H 0.088 0.912 7 C -0.229 4.229 8 N -0.538 5.538 9 Si 0.760 3.240 10 H -0.223 1.223 11 H -0.227 1.227 12 H -0.203 1.203 13 C 0.043 3.957 14 C -0.191 4.191 15 C 0.319 3.681 16 O -0.424 6.424 17 N -0.309 5.309 18 C 0.044 3.956 19 C -0.097 4.097 20 C -0.112 4.112 21 C -0.086 4.086 22 C -0.132 4.132 23 N 0.548 4.452 24 O -0.397 6.397 25 O -0.382 6.382 26 C -0.054 4.054 27 C -0.189 4.189 28 H 0.071 0.929 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.039 0.961 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.071 0.929 38 H 0.123 0.877 39 H 0.112 0.888 40 H 0.268 0.732 41 H 0.172 0.828 42 H 0.200 0.800 43 H 0.188 0.812 44 H 0.120 0.880 45 H 0.110 0.890 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.147 -6.581 -17.786 19.412 hybrid contribution 0.485 -0.255 1.388 1.492 sum 4.632 -6.837 -16.398 18.360 Atomic orbital electron populations 1.21563 0.96414 1.00665 1.00402 1.21913 0.94765 0.98929 1.00000 1.20902 0.81777 0.95499 0.97751 1.44443 1.02190 1.84691 1.01695 1.19343 0.91094 1.44234 0.84861 0.91237 1.25099 0.97964 1.01217 0.98653 1.70350 1.18816 1.39548 1.25114 0.85817 0.78154 0.80039 0.79988 1.22347 1.22711 1.20318 1.20512 0.95774 0.92366 0.87063 1.22490 1.01086 1.03082 0.92438 1.21322 0.77822 0.82045 0.86904 1.90641 1.54266 1.36858 1.60634 1.43633 1.51157 1.10344 1.25727 1.17482 0.93636 0.96077 0.88449 1.22025 0.98661 0.98006 0.91026 1.21430 0.93920 0.97609 0.98282 1.21323 0.97863 0.91314 0.98145 1.20815 0.98986 0.92842 1.00569 1.43752 1.00454 1.01683 0.99281 1.94522 1.37855 1.84091 1.23188 1.94471 1.76148 1.30540 1.37029 1.19630 0.92422 0.98222 0.95144 1.21266 1.05643 0.96681 0.95269 0.92907 0.94501 0.92996 0.94259 0.92236 0.92564 0.96137 0.94284 0.94154 0.92950 0.87676 0.88772 0.73177 0.82825 0.80008 0.81230 0.88013 0.89012 0.89884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.40 9.91 71.98 0.71 -3.69 16 2 C -0.12 -4.55 5.71 30.60 0.17 -4.38 16 3 C 0.17 7.25 4.94 86.38 0.43 7.67 16 4 N -0.61 -27.49 2.53 -701.97 -1.78 -29.26 16 5 C -0.27 -13.52 9.65 84.04 0.81 -12.71 16 6 H 0.07 3.54 8.01 -2.91 -0.02 3.52 16 7 C -0.03 -1.68 4.78 84.86 0.41 -1.27 16 8 N -0.89 -47.12 9.06 21.65 0.20 -46.93 16 9 Si 0.93 42.82 29.66 68.60 2.03 44.86 16 10 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 11 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 12 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 13 C 0.17 6.33 5.00 86.38 0.43 6.76 16 14 C -0.15 -4.32 5.93 29.85 0.18 -4.14 16 15 C 0.53 13.65 7.68 87.66 0.67 14.32 16 16 O -0.55 -16.97 13.31 -3.03 -0.04 -17.01 16 17 N -0.66 -12.76 4.77 -303.51 -1.45 -14.20 16 18 C 0.14 2.76 6.31 38.15 0.24 3.00 16 19 C -0.08 -1.44 8.71 22.39 0.20 -1.25 16 20 C -0.09 -1.28 10.04 22.25 0.22 -1.06 16 21 C -0.07 -1.04 9.55 22.29 0.21 -0.82 16 22 C -0.05 -0.97 6.83 36.36 0.25 -0.72 16 23 N 0.04 0.83 4.45 -46.51 -0.21 0.63 16 24 O -0.19 -4.66 18.46 18.87 0.35 -4.31 16 25 O -0.17 -4.11 15.37 18.89 0.29 -3.82 16 26 C -0.05 -0.96 5.90 -19.74 -0.12 -1.08 16 27 C -0.13 -2.17 8.26 71.24 0.59 -1.58 16 28 H 0.05 1.54 8.14 -2.39 -0.02 1.53 16 29 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.05 1.51 8.14 -2.39 -0.02 1.50 16 31 H 0.04 1.36 6.02 -2.39 -0.01 1.34 16 32 H 0.06 2.77 6.57 -2.39 -0.02 2.76 16 33 H 0.06 2.85 5.75 -2.39 -0.01 2.83 16 34 H 0.02 0.82 7.96 -2.39 -0.02 0.80 16 35 H 0.25 12.93 8.31 -92.71 -0.77 12.15 16 36 H 0.04 1.60 8.00 -2.38 -0.02 1.58 16 37 H 0.05 1.88 7.89 -2.39 -0.02 1.86 16 38 H 0.11 2.86 5.98 -2.39 -0.01 2.85 16 39 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 40 H 0.43 5.99 7.63 -92.71 -0.71 5.28 16 41 H 0.15 3.22 6.09 -2.91 -0.02 3.20 16 42 H 0.18 1.27 8.06 -2.91 -0.02 1.24 16 43 H 0.17 1.99 7.62 -2.91 -0.02 1.97 16 44 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 45 H 0.09 1.72 5.92 -2.39 -0.01 1.70 16 46 H 0.08 1.17 6.78 -2.39 -0.02 1.16 16 Total: -1.00 -61.52 375.44 5.12 -56.40 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: 0.31 Total: 14.58 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: 5.41 Total: -0.93 kcal Atomic # 7 Polarization: -86.53 SS G_CDS: -3.24 Total: -89.77 kcal Atomic # 8 Polarization: -25.74 SS G_CDS: 0.60 Total: -25.14 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.86 kcal Total: -61.52 5.12 -56.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058909239.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.610 kcal (2) G-P(sol) polarization free energy of solvation -61.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds