Wall clock time and date at job start Tue Mar 31 2020 18:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46744 * 2 1 4 4 C 1.53003 * 109.46744 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.46811 * 304.99870 * 4 3 2 6 6 N 1.46505 * 109.47268 * 64.99627 * 4 3 2 7 7 C 1.34782 * 119.99924 * 60.00176 * 6 4 3 8 8 N 1.34767 * 119.99969 * 179.97438 * 7 6 4 9 9 O 1.21587 * 120.00023 * 359.97438 * 7 6 4 10 10 C 1.50699 * 109.46987 * 184.99983 * 4 3 2 11 11 O 1.21283 * 119.99500 * 259.99733 * 10 4 3 12 12 N 1.34768 * 120.00358 * 79.99711 * 10 4 3 13 13 C 1.46503 * 120.00207 * 179.97438 * 12 10 4 14 14 C 1.50701 * 109.46930 * 180.02562 * 13 12 10 15 15 C 1.38307 * 119.92751 * 269.72328 * 14 13 12 16 16 C 1.38105 * 120.06147 * 179.73104 * 15 14 13 17 17 C 1.38872 * 119.93430 * 0.56469 * 16 15 14 18 18 O 1.35750 * 120.06955 * 179.68276 * 17 16 15 19 19 C 1.34838 * 116.99807 * 174.49013 * 18 17 16 20 20 H 1.07994 * 119.99916 * 5.06161 * 19 18 17 21 21 C 1.38659 * 119.99657 * 185.05899 * 19 18 17 22 22 N 1.31558 * 119.99707 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 119.99828 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.47037 * 90.00289 * 23 21 19 25 25 H 1.48508 * 109.46833 * 209.99679 * 23 21 19 26 26 H 1.48498 * 109.47512 * 329.99801 * 23 21 19 27 27 C 1.38887 * 119.86270 * 359.71205 * 17 16 15 28 28 C 1.38093 * 119.92815 * 359.97438 * 27 17 16 29 29 H 1.08995 * 109.47040 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47511 * 300.00427 * 1 2 3 31 31 H 1.09003 * 109.46985 * 60.00536 * 1 2 3 32 32 H 1.08996 * 109.46911 * 239.99990 * 2 1 3 33 33 H 1.09003 * 109.46985 * 119.99464 * 2 1 3 34 34 H 1.08995 * 109.47763 * 59.99888 * 3 2 1 35 35 H 1.09003 * 109.46942 * 299.99491 * 3 2 1 36 36 H 0.97002 * 119.99955 * 239.99912 * 6 4 3 37 37 H 0.97002 * 119.99911 * 359.97438 * 8 7 6 38 38 H 0.97001 * 119.99906 * 179.97438 * 8 7 6 39 39 H 0.97000 * 119.99831 * 359.97438 * 12 10 4 40 40 H 1.09004 * 109.47330 * 300.00092 * 13 12 10 41 41 H 1.08996 * 109.47063 * 60.00462 * 13 12 10 42 42 H 1.07994 * 119.96598 * 359.97438 * 15 14 13 43 43 H 1.07999 * 120.02925 * 180.28229 * 16 15 14 44 44 H 0.96992 * 119.99657 * 179.97438 * 22 21 19 45 45 H 1.08003 * 120.03351 * 179.97438 * 27 17 16 46 46 H 1.07999 * 119.96394 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9336 0.8530 0.8410 6 7 4.0578 0.8589 -1.2527 7 6 3.7318 1.4245 -2.4319 8 7 4.1810 0.8879 -3.5837 9 8 3.0324 2.4187 -2.4565 10 6 4.0723 2.8580 0.1232 11 8 4.4460 3.4572 -0.8629 12 7 4.1063 3.4579 1.3295 13 6 4.5952 4.8337 1.4499 14 6 4.5311 5.2651 2.8924 15 6 3.3909 5.8783 3.3792 16 6 3.3270 6.2698 4.7020 17 6 4.4134 6.0577 5.5407 18 8 4.3560 6.4472 6.8399 19 6 5.3978 6.1100 7.6267 20 1 6.2636 5.6270 7.1985 21 6 5.3574 6.3834 8.9854 22 7 6.3740 6.0548 9.7530 23 14 3.8594 7.2183 9.7259 24 1 2.8808 6.1879 10.1568 25 1 4.2739 8.0286 10.8994 26 1 3.2327 8.1023 8.7105 27 6 5.5590 5.4468 5.0474 28 6 5.6143 5.0518 3.7254 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 1.6766 1.9565 0.8899 35 1 1.6766 1.9563 -0.8901 36 1 4.6155 0.0655 -1.2331 37 1 4.7392 0.0949 -3.5640 38 1 3.9460 1.2947 -4.4323 39 1 3.8071 2.9787 2.1180 40 1 5.6268 4.8846 1.1014 41 1 3.9742 5.4942 0.8448 42 1 2.5484 6.0477 2.7251 43 1 2.4348 6.7445 5.0827 44 1 6.3459 6.2464 10.7034 45 1 6.4057 5.2809 5.6971 46 1 6.5047 4.5763 3.3413 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067925856.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:56 Heat of formation + Delta-G solvation = -76.131579 kcal Electronic energy + Delta-G solvation = -28234.439795 eV Core-core repulsion = 24124.684748 eV Total energy + Delta-G solvation = -4109.755047 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.69775 -39.40579 -38.75963 -37.02111 -36.03216 -34.38218 -34.01150 -33.12747 -32.47482 -30.51858 -30.30512 -28.95589 -26.22322 -25.08440 -24.01140 -22.19832 -22.11011 -21.14896 -20.58696 -19.95124 -18.78387 -17.99430 -17.76201 -17.34449 -16.82864 -16.04258 -15.58167 -15.32895 -14.95950 -14.76791 -14.59875 -14.26260 -14.21946 -14.09657 -13.86388 -13.69720 -13.59449 -13.32961 -12.84967 -12.73760 -12.58715 -12.27044 -12.09836 -11.98258 -11.52655 -11.47372 -11.34379 -11.00703 -10.95428 -10.83752 -10.76261 -10.28098 -10.21995 -9.90315 -9.70860 -9.48169 -9.06943 -8.92798 -8.86398 -8.37113 -7.46482 -6.49990 -4.16891 1.96207 2.03424 2.54322 2.83419 3.15850 3.18675 3.20867 3.35045 3.49608 4.16782 4.26543 4.39730 4.57293 4.67215 4.73035 4.75688 4.86698 4.97815 5.02186 5.20558 5.28308 5.37700 5.42161 5.56791 5.57981 5.64411 5.75399 5.85307 5.91867 5.95154 6.03814 6.10582 6.24752 6.26051 6.46605 6.49200 6.56916 6.68835 6.77285 6.91390 7.13864 7.19683 7.50443 7.64249 7.71164 7.80130 7.94523 8.35219 8.62297 8.84728 9.45748 10.57223 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.019552 B = 0.002119 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.717556 B =13209.262503 C =13806.347032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C -0.136 4.136 4 C 0.154 3.846 5 H 0.108 0.892 6 N -0.733 5.733 7 C 0.710 3.290 8 N -0.872 5.872 9 O -0.563 6.563 10 C 0.495 3.505 11 O -0.512 6.512 12 N -0.725 5.725 13 C 0.180 3.820 14 C -0.204 4.204 15 C -0.056 4.056 16 C -0.195 4.195 17 C 0.166 3.834 18 O -0.213 6.213 19 C -0.391 4.391 20 H 0.108 0.892 21 C 0.064 3.936 22 N -0.876 5.876 23 Si 0.906 3.094 24 H -0.273 1.273 25 H -0.281 1.281 26 H -0.259 1.259 27 C -0.224 4.224 28 C -0.053 4.053 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.095 0.905 36 H 0.398 0.602 37 H 0.392 0.608 38 H 0.413 0.587 39 H 0.399 0.601 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.115 0.885 43 H 0.118 0.882 44 H 0.281 0.719 45 H 0.134 0.866 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.067 -14.978 -20.414 26.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.174 4.174 4 C 0.044 3.956 5 H 0.126 0.874 6 N -0.389 5.389 7 C 0.409 3.591 8 N -0.441 5.441 9 O -0.437 6.437 10 C 0.278 3.722 11 O -0.386 6.386 12 N -0.378 5.378 13 C 0.058 3.942 14 C -0.205 4.205 15 C -0.075 4.075 16 C -0.214 4.214 17 C 0.113 3.887 18 O -0.118 6.118 19 C -0.467 4.467 20 H 0.125 0.875 21 C -0.140 4.140 22 N -0.513 5.513 23 Si 0.731 3.269 24 H -0.198 1.198 25 H -0.207 1.207 26 H -0.183 1.183 27 C -0.243 4.243 28 C -0.072 4.072 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.113 0.887 36 H 0.231 0.769 37 H 0.219 0.781 38 H 0.244 0.756 39 H 0.233 0.767 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.133 0.867 43 H 0.136 0.864 44 H 0.091 0.909 45 H 0.152 0.848 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -6.469 -13.515 -20.624 25.492 hybrid contribution 0.069 -0.539 0.644 0.843 sum -6.401 -14.054 -19.980 25.252 Atomic orbital electron populations 1.21753 0.95660 1.01477 1.02084 1.21456 0.96096 0.96102 1.01763 1.22036 0.92201 0.98208 1.04976 1.20726 0.95897 0.92498 0.86482 0.87402 1.44680 1.57367 1.32658 1.04227 1.15836 0.80401 0.82380 0.80512 1.42974 1.58772 1.34548 1.07773 1.90969 1.41667 1.25298 1.85810 1.20870 0.79038 0.88875 0.83419 1.90752 1.46074 1.65326 1.36415 1.46277 1.66546 1.15848 1.09128 1.19944 0.99279 0.81706 0.93288 1.19305 0.96522 1.09765 0.94918 1.20552 0.96535 0.96337 0.94070 1.20217 0.98320 1.09380 0.93482 1.19181 0.93130 0.91575 0.84806 1.83579 1.44294 1.67550 1.16351 1.20783 0.95674 1.40649 0.89550 0.87515 1.24491 0.98212 0.96498 0.94776 1.69642 1.30197 1.45131 1.06345 0.86173 0.81850 0.80038 0.78813 1.19812 1.20702 1.18321 1.21276 0.99860 1.06844 0.96326 1.20690 0.96854 0.96797 0.92841 0.92843 0.92518 0.92748 0.92139 0.92026 0.90570 0.88663 0.76852 0.78080 0.75565 0.76653 0.91714 0.91590 0.86744 0.86381 0.90927 0.84824 0.87160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.91 37.16 0.37 -0.73 16 2 C -0.12 -0.82 5.82 -26.73 -0.16 -0.98 16 3 C -0.14 -1.24 4.54 -26.73 -0.12 -1.36 16 4 C 0.15 1.39 3.01 -69.08 -0.21 1.18 16 5 H 0.11 0.64 8.14 -51.93 -0.42 0.21 16 6 N -0.73 -5.97 4.66 -59.81 -0.28 -6.25 16 7 C 0.71 7.86 7.59 -86.92 -0.66 7.20 16 8 N -0.87 -5.83 8.88 27.63 0.25 -5.59 16 9 O -0.56 -9.06 13.03 -18.20 -0.24 -9.29 16 10 C 0.49 6.48 6.82 -10.99 -0.07 6.40 16 11 O -0.51 -8.98 13.68 -17.93 -0.25 -9.23 16 12 N -0.72 -8.75 5.55 -61.47 -0.34 -9.09 16 13 C 0.18 2.52 5.80 -5.19 -0.03 2.49 16 14 C -0.20 -3.14 5.25 -104.57 -0.55 -3.69 16 15 C -0.06 -0.89 9.69 -39.60 -0.38 -1.28 16 16 C -0.19 -3.64 9.99 -39.40 -0.39 -4.03 16 17 C 0.17 3.64 6.65 -39.11 -0.26 3.38 16 18 O -0.21 -5.43 8.59 0.03 0.00 -5.43 16 19 C -0.39 -10.66 9.95 30.89 0.31 -10.35 16 20 H 0.11 2.96 5.44 -52.49 -0.29 2.68 16 21 C 0.06 1.75 5.49 -17.51 -0.10 1.65 16 22 N -0.88 -24.65 13.96 55.48 0.77 -23.88 16 23 Si 0.91 21.10 28.62 -169.99 -4.86 16.23 16 24 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.26 -6.07 7.11 56.52 0.40 -5.67 16 27 C -0.22 -4.54 9.17 -39.39 -0.36 -4.90 16 28 C -0.05 -0.89 9.69 -39.61 -0.38 -1.27 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.43 7.75 -51.93 -0.40 0.02 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.09 1.19 6.04 -51.93 -0.31 0.88 16 36 H 0.40 1.82 8.84 -40.82 -0.36 1.46 16 37 H 0.39 1.25 8.84 -40.82 -0.36 0.89 16 38 H 0.41 2.56 8.93 -40.82 -0.36 2.20 16 39 H 0.40 4.08 8.46 -40.82 -0.35 3.73 16 40 H 0.06 0.93 8.08 -51.93 -0.42 0.51 16 41 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 42 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 43 H 0.12 2.07 8.06 -52.49 -0.42 1.65 16 44 H 0.28 7.29 8.31 -40.82 -0.34 6.95 16 45 H 0.13 2.87 5.64 -52.48 -0.30 2.58 16 46 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 385.10 15.07 5.80 5.80 Total: -1.00 -35.05 385.10 -8.65 -43.70 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -6.51 Total: 9.31 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: -3.00 Total: -6.30 kcal Atomic # 7 Polarization: -45.20 SS G_CDS: 0.40 Total: -44.80 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: -0.48 Total: -23.95 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.86 Total: 16.23 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.05 -8.65 -43.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067925856.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.428 kcal (2) G-P(sol) polarization free energy of solvation -35.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds