Wall clock time and date at job start Tue Mar 31 2020 18:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46744 * 2 1 4 4 C 1.53003 * 109.46744 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.46811 * 304.99870 * 4 3 2 6 6 N 1.46505 * 109.47268 * 64.99627 * 4 3 2 7 7 C 1.34782 * 119.99924 * 60.00176 * 6 4 3 8 8 N 1.34767 * 119.99969 * 179.97438 * 7 6 4 9 9 O 1.21587 * 120.00023 * 359.97438 * 7 6 4 10 10 C 1.50699 * 109.46987 * 184.99983 * 4 3 2 11 11 O 1.21283 * 119.99500 * 259.99733 * 10 4 3 12 12 N 1.34768 * 120.00358 * 79.99711 * 10 4 3 13 13 C 1.46503 * 120.00207 * 179.97438 * 12 10 4 14 14 C 1.50701 * 109.46930 * 180.02562 * 13 12 10 15 15 C 1.38307 * 119.92751 * 269.72328 * 14 13 12 16 16 C 1.38105 * 120.06147 * 179.73104 * 15 14 13 17 17 C 1.38872 * 119.93430 * 0.56469 * 16 15 14 18 18 O 1.35750 * 120.06955 * 179.68276 * 17 16 15 19 19 C 1.34838 * 116.99807 * 174.49013 * 18 17 16 20 20 H 1.07994 * 119.99916 * 5.06161 * 19 18 17 21 21 C 1.38659 * 119.99657 * 185.05899 * 19 18 17 22 22 N 1.31558 * 119.99707 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 119.99828 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.47037 * 90.00289 * 23 21 19 25 25 H 1.48508 * 109.46833 * 209.99679 * 23 21 19 26 26 H 1.48498 * 109.47512 * 329.99801 * 23 21 19 27 27 C 1.38887 * 119.86270 * 359.71205 * 17 16 15 28 28 C 1.38093 * 119.92815 * 359.97438 * 27 17 16 29 29 H 1.08995 * 109.47040 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47511 * 300.00427 * 1 2 3 31 31 H 1.09003 * 109.46985 * 60.00536 * 1 2 3 32 32 H 1.08996 * 109.46911 * 239.99990 * 2 1 3 33 33 H 1.09003 * 109.46985 * 119.99464 * 2 1 3 34 34 H 1.08995 * 109.47763 * 59.99888 * 3 2 1 35 35 H 1.09003 * 109.46942 * 299.99491 * 3 2 1 36 36 H 0.97002 * 119.99955 * 239.99912 * 6 4 3 37 37 H 0.97002 * 119.99911 * 359.97438 * 8 7 6 38 38 H 0.97001 * 119.99906 * 179.97438 * 8 7 6 39 39 H 0.97000 * 119.99831 * 359.97438 * 12 10 4 40 40 H 1.09004 * 109.47330 * 300.00092 * 13 12 10 41 41 H 1.08996 * 109.47063 * 60.00462 * 13 12 10 42 42 H 1.07994 * 119.96598 * 359.97438 * 15 14 13 43 43 H 1.07999 * 120.02925 * 180.28229 * 16 15 14 44 44 H 0.96992 * 119.99657 * 179.97438 * 22 21 19 45 45 H 1.08003 * 120.03351 * 179.97438 * 27 17 16 46 46 H 1.07999 * 119.96394 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9336 0.8530 0.8410 6 7 4.0578 0.8589 -1.2527 7 6 3.7318 1.4245 -2.4319 8 7 4.1810 0.8879 -3.5837 9 8 3.0324 2.4187 -2.4565 10 6 4.0723 2.8580 0.1232 11 8 4.4460 3.4572 -0.8629 12 7 4.1063 3.4579 1.3295 13 6 4.5952 4.8337 1.4499 14 6 4.5311 5.2651 2.8924 15 6 3.3909 5.8783 3.3792 16 6 3.3270 6.2698 4.7020 17 6 4.4134 6.0577 5.5407 18 8 4.3560 6.4472 6.8399 19 6 5.3978 6.1100 7.6267 20 1 6.2636 5.6270 7.1985 21 6 5.3574 6.3834 8.9854 22 7 6.3740 6.0548 9.7530 23 14 3.8594 7.2183 9.7259 24 1 2.8808 6.1879 10.1568 25 1 4.2739 8.0286 10.8994 26 1 3.2327 8.1023 8.7105 27 6 5.5590 5.4468 5.0474 28 6 5.6143 5.0518 3.7254 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 1.6766 1.9565 0.8899 35 1 1.6766 1.9563 -0.8901 36 1 4.6155 0.0655 -1.2331 37 1 4.7392 0.0949 -3.5640 38 1 3.9460 1.2947 -4.4323 39 1 3.8071 2.9787 2.1180 40 1 5.6268 4.8846 1.1014 41 1 3.9742 5.4942 0.8448 42 1 2.5484 6.0477 2.7251 43 1 2.4348 6.7445 5.0827 44 1 6.3459 6.2464 10.7034 45 1 6.4057 5.2809 5.6971 46 1 6.5047 4.5763 3.3413 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067925856.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:55 Heat of formation + Delta-G solvation = -102.991433 kcal Electronic energy + Delta-G solvation = -28235.604526 eV Core-core repulsion = 24124.684748 eV Total energy + Delta-G solvation = -4110.919778 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.58219 -40.94196 -39.83636 -38.55679 -36.80431 -35.59999 -34.80997 -34.43185 -33.76302 -31.91567 -31.69181 -29.82014 -27.77142 -26.43027 -25.04642 -23.71366 -22.87967 -22.12423 -21.85602 -20.86805 -19.83636 -19.50981 -19.14608 -18.47562 -17.72235 -16.98840 -16.75786 -16.47455 -16.14856 -15.96317 -15.74368 -15.69467 -15.46270 -15.26593 -15.01954 -14.91428 -14.55299 -14.43022 -14.27912 -14.13215 -14.04765 -13.45239 -13.21536 -13.09998 -12.80234 -12.58131 -12.47190 -12.32697 -12.22087 -11.98205 -11.93873 -11.60847 -11.29769 -11.24112 -10.91409 -10.78536 -10.42815 -10.00745 -9.85245 -9.82834 -9.07390 -8.50254 -6.23002 0.49336 0.54676 1.33074 1.36043 1.52772 1.69116 1.97736 2.28061 2.31693 2.54885 2.81442 3.05986 3.14926 3.71479 3.78605 3.88171 3.99028 4.02473 4.07626 4.14292 4.28590 4.36376 4.43202 4.54643 4.66783 4.74109 4.80111 4.81201 4.95768 5.01371 5.06097 5.22441 5.26793 5.33772 5.35546 5.48461 5.50482 5.54726 5.56395 5.71238 5.79231 5.88373 6.00605 6.15178 6.19135 6.67166 6.84029 7.23933 7.37899 7.57155 7.89296 8.60928 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.019552 B = 0.002119 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.717556 B =13209.262503 C =13806.347032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.109 4.109 3 C -0.129 4.129 4 C 0.157 3.843 5 H 0.150 0.850 6 N -0.720 5.720 7 C 0.700 3.300 8 N -0.856 5.856 9 O -0.618 6.618 10 C 0.491 3.509 11 O -0.558 6.558 12 N -0.716 5.716 13 C 0.186 3.814 14 C -0.171 4.171 15 C -0.047 4.047 16 C -0.191 4.191 17 C 0.129 3.871 18 O -0.242 6.242 19 C -0.399 4.399 20 H 0.084 0.916 21 C 0.011 3.989 22 N -0.921 5.921 23 Si 0.969 3.031 24 H -0.264 1.264 25 H -0.270 1.270 26 H -0.263 1.263 27 C -0.236 4.236 28 C -0.048 4.048 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.039 0.961 32 H 0.061 0.939 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.058 0.942 36 H 0.418 0.582 37 H 0.411 0.589 38 H 0.415 0.585 39 H 0.412 0.588 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.149 0.851 43 H 0.130 0.870 44 H 0.285 0.715 45 H 0.111 0.889 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.286 -16.719 -22.016 28.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.147 4.147 3 C -0.168 4.168 4 C 0.047 3.953 5 H 0.168 0.832 6 N -0.378 5.378 7 C 0.398 3.602 8 N -0.425 5.425 9 O -0.496 6.496 10 C 0.276 3.724 11 O -0.435 6.435 12 N -0.369 5.369 13 C 0.063 3.937 14 C -0.172 4.172 15 C -0.065 4.065 16 C -0.210 4.210 17 C 0.080 3.920 18 O -0.149 6.149 19 C -0.475 4.475 20 H 0.102 0.898 21 C -0.188 4.188 22 N -0.561 5.561 23 Si 0.792 3.208 24 H -0.189 1.189 25 H -0.194 1.194 26 H -0.188 1.188 27 C -0.255 4.255 28 C -0.067 4.067 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.058 0.942 32 H 0.080 0.920 33 H 0.102 0.898 34 H 0.098 0.902 35 H 0.077 0.923 36 H 0.255 0.745 37 H 0.241 0.759 38 H 0.247 0.753 39 H 0.248 0.752 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.166 0.834 43 H 0.148 0.852 44 H 0.094 0.906 45 H 0.129 0.871 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -7.664 -15.343 -22.264 28.104 hybrid contribution 0.444 -0.101 0.725 0.856 sum -7.220 -15.444 -21.538 27.469 Atomic orbital electron populations 1.21766 0.96000 1.01991 1.01377 1.21419 0.95750 0.94678 1.02852 1.21950 0.92176 0.99337 1.03372 1.20849 0.95797 0.90562 0.88103 0.83214 1.44538 1.57126 1.32892 1.03231 1.16190 0.80096 0.82029 0.81847 1.42798 1.58117 1.34789 1.06788 1.90939 1.44097 1.27881 1.86728 1.21612 0.77912 0.90227 0.82602 1.90742 1.48139 1.66709 1.37896 1.46107 1.66130 1.15026 1.09676 1.19793 0.99507 0.82903 0.91533 1.19518 0.95452 1.06957 0.95320 1.20915 0.97606 0.94766 0.93230 1.20491 0.97711 1.08750 0.94050 1.19718 0.94888 0.93195 0.84222 1.83529 1.43756 1.69907 1.17745 1.20715 0.95818 1.40704 0.90262 0.89836 1.25275 1.01008 0.97396 0.95131 1.69724 1.32121 1.47463 1.06825 0.85233 0.78483 0.79124 0.77998 1.18923 1.19441 1.18762 1.21267 0.98971 1.07622 0.97651 1.20895 0.98282 0.96146 0.91358 0.91711 0.92514 0.94220 0.92029 0.89807 0.90173 0.92310 0.74517 0.75866 0.75253 0.75211 0.91746 0.91785 0.83355 0.85190 0.90559 0.87100 0.84706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.91 71.98 0.71 -1.21 16 2 C -0.11 -1.22 5.82 30.60 0.18 -1.04 16 3 C -0.13 -2.09 4.54 30.60 0.14 -1.95 16 4 C 0.16 2.36 3.01 44.25 0.13 2.49 16 5 H 0.15 1.02 8.14 -2.39 -0.02 1.00 16 6 N -0.72 -9.84 4.66 -461.40 -2.15 -11.99 16 7 C 0.70 14.55 7.59 179.06 1.36 15.91 16 8 N -0.86 -10.00 8.88 -184.76 -1.64 -11.64 16 9 O -0.62 -19.85 13.03 18.47 0.24 -19.60 16 10 C 0.49 11.71 6.82 87.66 0.60 12.30 16 11 O -0.56 -18.92 13.68 19.42 0.27 -18.66 16 12 N -0.72 -15.00 5.55 -466.79 -2.59 -17.59 16 13 C 0.19 4.62 5.80 85.63 0.50 5.12 16 14 C -0.17 -4.76 5.25 -19.83 -0.10 -4.87 16 15 C -0.05 -1.33 9.69 22.25 0.22 -1.12 16 16 C -0.19 -6.80 9.99 22.39 0.22 -6.58 16 17 C 0.13 5.71 6.65 22.58 0.15 5.86 16 18 O -0.24 -12.66 8.59 -22.82 -0.20 -12.86 16 19 C -0.40 -22.74 9.95 67.92 0.68 -22.07 16 20 H 0.08 4.97 5.44 -2.91 -0.02 4.95 16 21 C 0.01 0.60 5.49 84.83 0.47 1.07 16 22 N -0.92 -53.81 13.96 21.61 0.30 -53.50 16 23 Si 0.97 44.32 28.62 68.60 1.96 46.28 16 24 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 25 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 26 H -0.26 -12.04 7.11 99.48 0.71 -11.34 16 27 C -0.24 -9.67 9.17 22.39 0.21 -9.47 16 28 C -0.05 -1.53 9.69 22.25 0.22 -1.31 16 29 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.06 0.69 7.75 -2.39 -0.02 0.67 16 33 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.06 1.44 6.04 -2.39 -0.01 1.43 16 36 H 0.42 2.33 8.84 -92.71 -0.82 1.51 16 37 H 0.41 1.59 8.84 -92.71 -0.82 0.77 16 38 H 0.42 4.66 8.93 -92.71 -0.83 3.84 16 39 H 0.41 6.78 8.46 -92.71 -0.78 6.00 16 40 H 0.06 1.67 8.08 -2.38 -0.02 1.65 16 41 H 0.06 1.69 8.08 -2.39 -0.02 1.67 16 42 H 0.15 3.35 8.06 -2.91 -0.02 3.32 16 43 H 0.13 4.30 8.06 -2.91 -0.02 4.27 16 44 H 0.28 15.27 8.31 -92.71 -0.77 14.50 16 45 H 0.11 5.05 5.64 -2.91 -0.02 5.03 16 46 H 0.14 3.62 8.06 -2.91 -0.02 3.60 16 Total: -1.00 -81.30 385.10 -0.33 -81.63 By element: Atomic # 1 Polarization: 26.98 SS G_CDS: -2.19 Total: 24.79 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: 5.67 Total: -6.86 kcal Atomic # 7 Polarization: -88.65 SS G_CDS: -6.08 Total: -94.72 kcal Atomic # 8 Polarization: -51.43 SS G_CDS: 0.31 Total: -51.12 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 1.96 Total: 46.28 kcal Total: -81.30 -0.33 -81.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067925856.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.359 kcal (2) G-P(sol) polarization free energy of solvation -81.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds