Wall clock time and date at job start Tue Mar 31 2020 18:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47428 * 2 1 4 4 C 1.52999 * 109.47084 * 239.99898 * 2 1 3 5 5 C 1.50707 * 109.46945 * 120.00039 * 2 1 3 6 6 O 1.21280 * 119.99874 * 0.02562 * 5 2 1 7 7 N 1.34781 * 119.99630 * 179.97438 * 5 2 1 8 8 N 1.40102 * 119.99514 * 179.97438 * 7 5 2 9 9 C 1.34778 * 119.99858 * 179.97438 * 8 7 5 10 10 O 1.21584 * 119.99654 * 180.02562 * 9 8 7 11 11 N 1.34769 * 119.99808 * 0.02562 * 9 8 7 12 12 C 1.46508 * 120.00011 * 179.97438 * 11 9 8 13 13 C 1.50695 * 109.47103 * 179.97438 * 12 11 9 14 14 C 1.38299 * 119.93247 * 90.00118 * 13 12 11 15 15 C 1.38101 * 120.07425 * 179.97438 * 14 13 12 16 16 C 1.38886 * 119.92536 * 0.02562 * 15 14 13 17 17 O 1.35750 * 120.06440 * 180.02562 * 16 15 14 18 18 C 1.34828 * 117.00075 * 5.53777 * 17 16 15 19 19 H 1.07993 * 120.00518 * 354.94289 * 18 17 16 20 20 C 1.38663 * 119.99751 * 174.94575 * 18 17 16 21 21 N 1.31556 * 120.00220 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99821 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47448 * 89.99502 * 22 20 18 24 24 H 1.48501 * 109.47175 * 209.99712 * 22 20 18 25 25 H 1.48506 * 109.47415 * 329.99678 * 22 20 18 26 26 C 1.38874 * 119.86623 * 0.27854 * 16 15 14 27 27 C 1.38106 * 119.92542 * 359.44577 * 26 16 15 28 28 H 1.09003 * 109.46915 * 300.00117 * 1 2 3 29 29 H 1.09000 * 109.46808 * 59.99763 * 1 2 3 30 30 H 1.08997 * 109.47219 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46877 * 179.97438 * 3 2 1 32 32 H 1.08995 * 109.46917 * 300.00128 * 3 2 1 33 33 H 1.09004 * 109.46646 * 60.00054 * 3 2 1 34 34 H 1.08997 * 109.47110 * 300.00088 * 4 2 1 35 35 H 1.09000 * 109.47021 * 60.00469 * 4 2 1 36 36 H 1.09004 * 109.46977 * 180.02562 * 4 2 1 37 37 H 0.96989 * 120.00126 * 0.02562 * 7 5 2 38 38 H 0.96999 * 119.99845 * 0.02562 * 8 7 5 39 39 H 0.97001 * 120.00514 * 359.97438 * 11 9 8 40 40 H 1.08998 * 109.46632 * 59.99915 * 12 11 9 41 41 H 1.08996 * 109.47144 * 299.99646 * 12 11 9 42 42 H 1.07999 * 119.96503 * 0.02562 * 14 13 12 43 43 H 1.07992 * 120.03608 * 180.02562 * 15 14 13 44 44 H 0.96996 * 120.00178 * 179.97438 * 21 20 18 45 45 H 1.07996 * 120.03745 * 179.72497 * 26 16 15 46 46 H 1.07997 * 119.96326 * 180.27708 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7105 1.2305 6 8 1.2442 -1.1718 2.0286 7 7 3.3574 -0.8340 1.4435 8 7 3.8244 -1.4940 2.5877 9 6 5.1495 -1.6181 2.8005 10 8 5.5546 -2.1913 3.7933 11 7 6.0252 -1.1068 1.9129 12 6 7.4656 -1.2412 2.1444 13 6 8.2191 -0.5902 1.0133 14 6 8.5649 0.7465 1.0936 15 6 9.2558 1.3459 0.0589 16 6 9.6030 0.6050 -1.0633 17 8 10.2826 1.1912 -2.0817 18 6 10.6906 2.4624 -1.8936 19 1 10.4032 2.9951 -0.9993 20 6 11.4793 3.0859 -2.8487 21 7 11.8298 2.4369 -3.9380 22 14 12.0451 4.8469 -2.5878 23 1 13.3462 4.8479 -1.8719 24 1 12.2038 5.5160 -3.9040 25 1 11.0352 5.5769 -1.7800 26 6 9.2489 -0.7354 -1.1437 27 6 8.5629 -1.3305 -0.1032 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1301 1.4424 0.0005 32 1 1.6768 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6767 -1.7489 -1.2492 35 1 1.6767 -0.2074 -2.1392 36 1 3.1300 -0.7217 -1.2490 37 1 3.9877 -0.4654 0.8051 38 1 3.1940 -1.8623 3.2264 39 1 5.7020 -0.6498 1.1207 40 1 7.7284 -2.2978 2.1950 41 1 7.7294 -0.7557 3.0840 42 1 8.2950 1.3220 1.9667 43 1 9.5258 2.3896 0.1224 44 1 12.3812 2.8732 -4.6062 45 1 9.5135 -1.3131 -2.0170 46 1 8.2911 -2.3739 -0.1631 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075976474.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:17 Heat of formation + Delta-G solvation = -42.161635 kcal Electronic energy + Delta-G solvation = -28229.263647 eV Core-core repulsion = 24120.981647 eV Total energy + Delta-G solvation = -4108.282000 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.99092 -39.83319 -39.14093 -37.01017 -36.28203 -35.86622 -34.50825 -32.43856 -31.18873 -30.36621 -29.75375 -27.81396 -27.51942 -26.00569 -24.83986 -23.78205 -22.13983 -21.51901 -20.76631 -20.22593 -19.15798 -18.15283 -17.70700 -17.11926 -16.54592 -16.05291 -15.66032 -15.38158 -14.94173 -14.87595 -14.74538 -14.55175 -14.33263 -14.04041 -13.96381 -13.72761 -13.55329 -12.95792 -12.86543 -12.85021 -12.68203 -12.42629 -12.25768 -12.14670 -11.78801 -11.57061 -11.49135 -11.41120 -11.40903 -11.06410 -10.87706 -10.78329 -10.67709 -10.54293 -10.17072 -9.51185 -9.25795 -8.98226 -8.55677 -8.37516 -7.42355 -6.59833 -4.18834 1.54882 1.96044 2.04427 2.10149 2.97690 2.98643 3.04747 3.08335 3.09748 3.84464 3.86400 4.25298 4.37481 4.39111 4.59816 4.77629 4.94182 5.05364 5.11260 5.14089 5.16453 5.28023 5.34451 5.37017 5.44659 5.46217 5.57519 5.66240 5.72375 5.75900 5.78596 5.86458 6.03751 6.13635 6.26270 6.27300 6.44183 6.51612 6.71929 6.88338 7.00497 7.06422 7.18598 7.27428 7.41617 7.62800 7.84614 7.96872 8.31843 8.85461 9.52628 10.57486 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011830 B = 0.002503 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2366.302224 B =11185.000677 C =12635.762461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.074 4.074 3 C -0.147 4.147 4 C -0.147 4.147 5 C 0.525 3.475 6 O -0.534 6.534 7 N -0.527 5.527 8 N -0.537 5.537 9 C 0.710 3.290 10 O -0.576 6.576 11 N -0.735 5.735 12 C 0.195 3.805 13 C -0.219 4.219 14 C -0.049 4.049 15 C -0.238 4.238 16 C 0.161 3.839 17 O -0.172 6.172 18 C -0.394 4.394 19 H 0.094 0.906 20 C 0.041 3.959 21 N -0.858 5.858 22 Si 0.942 3.058 23 H -0.272 1.272 24 H -0.276 1.276 25 H -0.267 1.267 26 C -0.196 4.196 27 C -0.053 4.053 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.063 0.937 37 H 0.421 0.579 38 H 0.440 0.560 39 H 0.391 0.609 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.108 0.892 43 H 0.128 0.872 44 H 0.272 0.728 45 H 0.119 0.881 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.411 -2.546 5.025 18.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.079 4.079 3 C -0.204 4.204 4 C -0.204 4.204 5 C 0.311 3.689 6 O -0.408 6.408 7 N -0.279 5.279 8 N -0.294 5.294 9 C 0.409 3.591 10 O -0.450 6.450 11 N -0.391 5.391 12 C 0.073 3.927 13 C -0.221 4.221 14 C -0.068 4.068 15 C -0.257 4.257 16 C 0.106 3.894 17 O -0.074 6.074 18 C -0.470 4.470 19 H 0.111 0.889 20 C -0.164 4.164 21 N -0.492 5.492 22 Si 0.766 3.234 23 H -0.197 1.197 24 H -0.202 1.202 25 H -0.191 1.191 26 C -0.215 4.215 27 C -0.072 4.072 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.082 0.918 37 H 0.263 0.737 38 H 0.286 0.714 39 H 0.226 0.774 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.127 0.873 43 H 0.146 0.854 44 H 0.082 0.918 45 H 0.137 0.863 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -17.269 -3.293 5.819 18.518 hybrid contribution 0.300 1.204 -0.334 1.285 sum -16.968 -2.089 5.485 17.955 Atomic orbital electron populations 1.21693 0.91195 1.03158 1.02526 1.20803 0.98419 0.96431 0.92252 1.21962 1.01543 0.93311 1.03622 1.21960 1.01537 1.00876 0.96050 1.20946 0.80040 0.79852 0.88086 1.90727 1.54590 1.48596 1.46919 1.45051 1.07498 1.57369 1.17973 1.44637 1.05428 1.60715 1.18627 1.15819 0.79405 0.80143 0.83728 1.91022 1.75208 1.49145 1.29620 1.45586 1.07034 1.61193 1.25335 1.19924 0.76006 1.00283 0.96484 1.19185 1.09999 0.95094 0.97784 1.20655 0.95553 0.93515 0.97061 1.21163 1.07349 1.01332 0.95842 1.19449 0.90558 0.91848 0.87512 1.83978 1.60924 1.28423 1.34059 1.21362 1.32049 0.86151 1.07459 0.88869 1.25328 0.95881 1.00343 0.94860 1.70029 1.33679 1.37369 1.08114 0.85693 0.79381 0.80038 0.78247 1.19744 1.20152 1.19103 1.20217 1.07263 0.93024 1.00990 1.20545 0.96095 0.98280 0.92248 0.91719 0.91418 0.91711 0.91825 0.90544 0.91672 0.91666 0.90546 0.91827 0.73694 0.71442 0.77427 0.91280 0.91322 0.87347 0.85390 0.91795 0.86343 0.86906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.85 7.76 37.16 0.29 -0.56 16 2 C -0.07 -0.50 0.87 -155.66 -0.14 -0.63 16 3 C -0.15 -0.82 8.37 37.16 0.31 -0.51 16 4 C -0.15 -0.81 8.37 37.16 0.31 -0.50 16 5 C 0.52 4.98 6.60 -10.98 -0.07 4.91 16 6 O -0.53 -6.90 15.82 5.56 0.09 -6.81 16 7 N -0.53 -4.61 6.04 31.22 0.19 -4.42 16 8 N -0.54 -5.90 6.26 27.63 0.17 -5.73 16 9 C 0.71 9.22 8.68 -86.92 -0.75 8.47 16 10 O -0.58 -9.61 17.18 5.29 0.09 -9.52 16 11 N -0.73 -8.38 5.51 -66.42 -0.37 -8.75 16 12 C 0.20 2.51 5.80 -5.19 -0.03 2.48 16 13 C -0.22 -3.20 5.25 -104.58 -0.55 -3.75 16 14 C -0.05 -0.78 9.69 -39.61 -0.38 -1.16 16 15 C -0.24 -4.60 9.17 -39.39 -0.36 -4.96 16 16 C 0.16 3.53 6.65 -39.11 -0.26 3.27 16 17 O -0.17 -4.56 9.76 0.05 0.00 -4.56 16 18 C -0.39 -10.32 9.49 30.89 0.29 -10.03 16 19 H 0.09 2.24 5.20 -52.49 -0.27 1.97 16 20 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 21 N -0.86 -23.95 13.67 55.48 0.76 -23.19 16 22 Si 0.94 19.38 29.55 -169.99 -5.02 14.35 16 23 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 24 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 25 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 26 C -0.20 -3.68 9.99 -39.39 -0.39 -4.07 16 27 C -0.05 -0.81 9.69 -39.61 -0.38 -1.20 16 28 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 31 H 0.06 0.32 7.56 -51.93 -0.39 -0.07 16 32 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.06 0.32 7.56 -51.93 -0.39 -0.07 16 37 H 0.42 2.85 5.54 -182.61 -1.01 1.84 16 38 H 0.44 5.02 8.10 -182.60 -1.48 3.54 16 39 H 0.39 3.72 6.38 -40.82 -0.26 3.46 16 40 H 0.07 0.90 8.08 -51.93 -0.42 0.48 16 41 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 42 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 43 H 0.13 2.51 5.64 -52.49 -0.30 2.22 16 44 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 45 H 0.12 2.17 8.06 -52.49 -0.42 1.75 16 46 H 0.11 1.47 8.06 -52.49 -0.42 1.04 16 LS Contribution 388.54 15.07 5.86 5.86 Total: -1.00 -32.26 388.54 -8.75 -41.01 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -8.30 Total: 9.01 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: -2.22 Total: -7.26 kcal Atomic # 7 Polarization: -42.84 SS G_CDS: 0.75 Total: -42.09 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: 0.18 Total: -20.89 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.02 Total: 14.35 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.26 -8.75 -41.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075976474.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.148 kcal (2) G-P(sol) polarization free energy of solvation -32.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds