Wall clock time and date at job start Tue Mar 31 2020 18:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47428 * 2 1 4 4 C 1.52999 * 109.47084 * 239.99898 * 2 1 3 5 5 C 1.50707 * 109.46945 * 120.00039 * 2 1 3 6 6 O 1.21280 * 119.99874 * 0.02562 * 5 2 1 7 7 N 1.34781 * 119.99630 * 179.97438 * 5 2 1 8 8 N 1.40102 * 119.99514 * 179.97438 * 7 5 2 9 9 C 1.34778 * 119.99858 * 179.97438 * 8 7 5 10 10 O 1.21584 * 119.99654 * 180.02562 * 9 8 7 11 11 N 1.34769 * 119.99808 * 0.02562 * 9 8 7 12 12 C 1.46508 * 120.00011 * 179.97438 * 11 9 8 13 13 C 1.50695 * 109.47103 * 179.97438 * 12 11 9 14 14 C 1.38299 * 119.93247 * 90.00118 * 13 12 11 15 15 C 1.38101 * 120.07425 * 179.97438 * 14 13 12 16 16 C 1.38886 * 119.92536 * 0.02562 * 15 14 13 17 17 O 1.35750 * 120.06440 * 180.02562 * 16 15 14 18 18 C 1.34828 * 117.00075 * 5.53777 * 17 16 15 19 19 H 1.07993 * 120.00518 * 354.94289 * 18 17 16 20 20 C 1.38663 * 119.99751 * 174.94575 * 18 17 16 21 21 N 1.31556 * 120.00220 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99821 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47448 * 89.99502 * 22 20 18 24 24 H 1.48501 * 109.47175 * 209.99712 * 22 20 18 25 25 H 1.48506 * 109.47415 * 329.99678 * 22 20 18 26 26 C 1.38874 * 119.86623 * 0.27854 * 16 15 14 27 27 C 1.38106 * 119.92542 * 359.44577 * 26 16 15 28 28 H 1.09003 * 109.46915 * 300.00117 * 1 2 3 29 29 H 1.09000 * 109.46808 * 59.99763 * 1 2 3 30 30 H 1.08997 * 109.47219 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46877 * 179.97438 * 3 2 1 32 32 H 1.08995 * 109.46917 * 300.00128 * 3 2 1 33 33 H 1.09004 * 109.46646 * 60.00054 * 3 2 1 34 34 H 1.08997 * 109.47110 * 300.00088 * 4 2 1 35 35 H 1.09000 * 109.47021 * 60.00469 * 4 2 1 36 36 H 1.09004 * 109.46977 * 180.02562 * 4 2 1 37 37 H 0.96989 * 120.00126 * 0.02562 * 7 5 2 38 38 H 0.96999 * 119.99845 * 0.02562 * 8 7 5 39 39 H 0.97001 * 120.00514 * 359.97438 * 11 9 8 40 40 H 1.08998 * 109.46632 * 59.99915 * 12 11 9 41 41 H 1.08996 * 109.47144 * 299.99646 * 12 11 9 42 42 H 1.07999 * 119.96503 * 0.02562 * 14 13 12 43 43 H 1.07992 * 120.03608 * 180.02562 * 15 14 13 44 44 H 0.96996 * 120.00178 * 179.97438 * 21 20 18 45 45 H 1.07996 * 120.03745 * 179.72497 * 26 16 15 46 46 H 1.07997 * 119.96326 * 180.27708 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7105 1.2305 6 8 1.2442 -1.1718 2.0286 7 7 3.3574 -0.8340 1.4435 8 7 3.8244 -1.4940 2.5877 9 6 5.1495 -1.6181 2.8005 10 8 5.5546 -2.1913 3.7933 11 7 6.0252 -1.1068 1.9129 12 6 7.4656 -1.2412 2.1444 13 6 8.2191 -0.5902 1.0133 14 6 8.5649 0.7465 1.0936 15 6 9.2558 1.3459 0.0589 16 6 9.6030 0.6050 -1.0633 17 8 10.2826 1.1912 -2.0817 18 6 10.6906 2.4624 -1.8936 19 1 10.4032 2.9951 -0.9993 20 6 11.4793 3.0859 -2.8487 21 7 11.8298 2.4369 -3.9380 22 14 12.0451 4.8469 -2.5878 23 1 13.3462 4.8479 -1.8719 24 1 12.2038 5.5160 -3.9040 25 1 11.0352 5.5769 -1.7800 26 6 9.2489 -0.7354 -1.1437 27 6 8.5629 -1.3305 -0.1032 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1301 1.4424 0.0005 32 1 1.6768 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6767 -1.7489 -1.2492 35 1 1.6767 -0.2074 -2.1392 36 1 3.1300 -0.7217 -1.2490 37 1 3.9877 -0.4654 0.8051 38 1 3.1940 -1.8623 3.2264 39 1 5.7020 -0.6498 1.1207 40 1 7.7284 -2.2978 2.1950 41 1 7.7294 -0.7557 3.0840 42 1 8.2950 1.3220 1.9667 43 1 9.5258 2.3896 0.1224 44 1 12.3812 2.8732 -4.6062 45 1 9.5135 -1.3131 -2.0170 46 1 8.2911 -2.3739 -0.1631 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075976474.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:16 Heat of formation + Delta-G solvation = -64.712362 kcal Electronic energy + Delta-G solvation = -28230.241520 eV Core-core repulsion = 24120.981647 eV Total energy + Delta-G solvation = -4109.259873 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.86273 -40.93535 -40.54727 -38.52966 -37.05555 -36.67746 -35.69839 -34.25272 -32.14430 -31.80343 -31.05074 -28.23899 -28.03147 -27.65994 -26.27270 -24.50701 -23.62164 -22.64485 -21.98596 -21.10977 -20.05112 -19.82741 -18.86727 -18.46161 -17.35414 -17.02038 -16.66019 -16.44454 -16.36638 -16.04126 -15.97636 -15.74244 -15.49960 -15.26384 -14.92492 -14.81440 -14.58838 -14.37571 -14.23890 -13.69361 -13.38478 -13.37848 -13.09564 -13.02411 -12.95569 -12.62104 -12.55546 -12.53554 -12.33897 -12.24309 -12.09628 -11.93308 -11.91797 -11.80556 -11.18168 -10.98306 -10.79606 -10.31497 -9.78804 -9.43856 -9.00815 -8.46896 -6.14693 0.50021 0.60469 0.77366 1.32379 1.37888 1.45485 1.54234 1.96163 2.00768 2.18293 2.84866 3.15415 3.23012 3.51411 3.74642 3.85078 3.87646 3.89386 4.05806 4.18635 4.20219 4.48047 4.59292 4.71392 4.71481 4.72544 4.83141 4.83243 4.93976 4.95932 4.97889 5.06317 5.16514 5.21675 5.26104 5.29014 5.30838 5.33291 5.35022 5.47845 5.59853 5.71752 5.77044 6.03365 6.17803 6.19304 6.54516 6.98484 7.11315 7.33371 7.77819 8.75840 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011830 B = 0.002503 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2366.302224 B =11185.000677 C =12635.762461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.068 4.068 3 C -0.147 4.147 4 C -0.147 4.147 5 C 0.523 3.477 6 O -0.571 6.571 7 N -0.517 5.517 8 N -0.534 5.534 9 C 0.714 3.286 10 O -0.612 6.612 11 N -0.724 5.724 12 C 0.200 3.800 13 C -0.184 4.184 14 C -0.042 4.042 15 C -0.243 4.243 16 C 0.125 3.875 17 O -0.228 6.228 18 C -0.411 4.411 19 H 0.105 0.895 20 C -0.021 4.021 21 N -0.919 5.919 22 Si 1.015 2.985 23 H -0.266 1.266 24 H -0.273 1.273 25 H -0.250 1.250 26 C -0.204 4.204 27 C -0.041 4.041 28 H 0.052 0.948 29 H 0.089 0.911 30 H 0.052 0.948 31 H 0.070 0.930 32 H 0.091 0.909 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.091 0.909 36 H 0.070 0.930 37 H 0.432 0.568 38 H 0.439 0.561 39 H 0.403 0.597 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.139 0.861 43 H 0.120 0.880 44 H 0.273 0.727 45 H 0.115 0.885 46 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.820 -2.230 6.365 19.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.072 4.072 3 C -0.205 4.205 4 C -0.205 4.205 5 C 0.311 3.689 6 O -0.448 6.448 7 N -0.270 5.270 8 N -0.289 5.289 9 C 0.413 3.587 10 O -0.490 6.490 11 N -0.381 5.381 12 C 0.077 3.923 13 C -0.185 4.185 14 C -0.061 4.061 15 C -0.262 4.262 16 C 0.074 3.926 17 O -0.134 6.134 18 C -0.487 4.487 19 H 0.122 0.878 20 C -0.219 4.219 21 N -0.557 5.557 22 Si 0.835 3.165 23 H -0.191 1.191 24 H -0.198 1.198 25 H -0.174 1.174 26 C -0.223 4.223 27 C -0.059 4.059 28 H 0.071 0.929 29 H 0.108 0.892 30 H 0.071 0.929 31 H 0.089 0.911 32 H 0.110 0.890 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.110 0.890 36 H 0.089 0.911 37 H 0.276 0.724 38 H 0.284 0.716 39 H 0.239 0.761 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.157 0.843 43 H 0.138 0.862 44 H 0.082 0.918 45 H 0.133 0.867 46 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -18.719 -2.982 7.171 20.266 hybrid contribution 0.477 0.843 -0.501 1.090 sum -18.243 -2.139 6.670 19.541 Atomic orbital electron populations 1.21714 0.91308 1.02568 1.03021 1.20844 0.98277 0.96920 0.91182 1.22000 1.02027 0.92328 1.04114 1.22000 1.02042 1.00560 0.95856 1.21599 0.79705 0.79177 0.88428 1.90716 1.55508 1.50191 1.48348 1.45095 1.07683 1.56887 1.17285 1.44494 1.04852 1.60311 1.19242 1.15753 0.79813 0.79838 0.83299 1.91005 1.76053 1.50741 1.31167 1.45268 1.06298 1.61025 1.25515 1.19854 0.76314 1.00585 0.95537 1.19429 1.07370 0.94351 0.97385 1.20942 0.94120 0.94204 0.96828 1.21237 1.07841 1.01075 0.96075 1.20006 0.91283 0.93292 0.88046 1.83951 1.63928 1.28966 1.36572 1.21821 1.32260 0.86671 1.07991 0.87806 1.26539 0.95909 1.04983 0.94425 1.70171 1.36107 1.39677 1.09719 0.84625 0.79143 0.74364 0.78388 1.19146 1.19799 1.17385 1.20438 1.07676 0.92089 1.02103 1.20883 0.94239 0.99820 0.90960 0.92896 0.89234 0.92867 0.91088 0.89002 0.92312 0.92276 0.89005 0.91063 0.72397 0.71601 0.76067 0.90520 0.90759 0.84274 0.86222 0.91837 0.86731 0.83463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.53 7.76 71.98 0.56 -0.97 16 2 C -0.07 -0.76 0.87 -52.93 -0.05 -0.81 16 3 C -0.15 -1.26 8.37 71.98 0.60 -0.65 16 4 C -0.15 -1.24 8.37 71.98 0.60 -0.64 16 5 C 0.52 9.11 6.60 87.66 0.58 9.69 16 6 O -0.57 -14.37 15.82 -3.03 -0.05 -14.42 16 7 N -0.52 -7.81 6.04 -173.52 -1.05 -8.86 16 8 N -0.53 -10.64 6.26 -184.75 -1.16 -11.79 16 9 C 0.71 16.59 8.68 179.06 1.55 18.14 16 10 O -0.61 -19.10 17.18 -3.98 -0.07 -19.17 16 11 N -0.72 -13.71 5.51 -482.31 -2.66 -16.37 16 12 C 0.20 4.26 5.80 85.63 0.50 4.76 16 13 C -0.18 -4.64 5.25 -19.84 -0.10 -4.74 16 14 C -0.04 -1.21 9.69 22.25 0.22 -0.99 16 15 C -0.24 -9.20 9.17 22.39 0.21 -8.99 16 16 C 0.12 5.55 6.65 22.58 0.15 5.70 16 17 O -0.23 -12.73 9.76 -22.72 -0.22 -12.95 16 18 C -0.41 -22.39 9.49 67.92 0.64 -21.74 16 19 H 0.10 5.12 5.20 -2.91 -0.02 5.11 16 20 C -0.02 -1.11 5.49 84.84 0.47 -0.64 16 21 N -0.92 -53.99 13.67 21.62 0.30 -53.70 16 22 Si 1.02 40.50 29.55 68.60 2.03 42.53 16 23 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 24 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 25 H -0.25 -9.15 7.11 99.48 0.71 -8.44 16 26 C -0.20 -7.51 9.99 22.39 0.22 -7.29 16 27 C -0.04 -1.11 9.69 22.25 0.22 -0.90 16 28 H 0.05 0.75 8.10 -2.39 -0.02 0.73 16 29 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.05 0.75 8.10 -2.39 -0.02 0.73 16 31 H 0.07 0.50 7.56 -2.39 -0.02 0.48 16 32 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 34 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.07 0.49 7.56 -2.38 -0.02 0.47 16 37 H 0.43 4.45 5.54 -213.33 -1.18 3.27 16 38 H 0.44 9.46 8.10 -213.32 -1.73 7.73 16 39 H 0.40 5.95 6.38 -92.71 -0.59 5.36 16 40 H 0.08 1.64 8.08 -2.39 -0.02 1.62 16 41 H 0.07 1.61 8.08 -2.39 -0.02 1.60 16 42 H 0.14 3.18 8.06 -2.91 -0.02 3.16 16 43 H 0.12 4.69 5.64 -2.91 -0.02 4.67 16 44 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 45 H 0.11 4.25 8.06 -2.91 -0.02 4.22 16 46 H 0.15 3.12 8.06 -2.91 -0.02 3.10 16 Total: -1.00 -74.68 388.54 1.02 -73.66 By element: Atomic # 1 Polarization: 33.62 SS G_CDS: -2.46 Total: 31.15 kcal Atomic # 6 Polarization: -16.44 SS G_CDS: 6.36 Total: -10.08 kcal Atomic # 7 Polarization: -86.15 SS G_CDS: -4.57 Total: -90.72 kcal Atomic # 8 Polarization: -46.21 SS G_CDS: -0.34 Total: -46.54 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.53 kcal Total: -74.68 1.02 -73.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075976474.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.948 kcal (2) G-P(sol) polarization free energy of solvation -74.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds