Wall clock time and date at job start Tue Mar 31 2020 19:28:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.52994 * 109.47043 * 2 1
4 4 N 1.46495 * 109.47164 * 120.00281 * 2 1 3
5 5 C 1.46496 * 120.00214 * 304.50595 * 4 2 1
6 6 C 1.50694 * 109.47153 * 270.00545 * 5 4 2
7 7 H 1.07995 * 120.00387 * 359.97438 * 6 5 4
8 8 C 1.37882 * 120.00252 * 179.97438 * 6 5 4
9 9 N 1.31516 * 119.99671 * 359.97438 * 8 6 5
10 10 Si 1.86797 * 120.00355 * 179.97438 * 8 6 5
11 11 H 1.48494 * 109.47185 * 0.02562 * 10 8 6
12 12 H 1.48502 * 109.46704 * 120.00060 * 10 8 6
13 13 H 1.48497 * 109.47317 * 239.99819 * 10 8 6
14 14 C 1.34777 * 119.99980 * 124.50746 * 4 2 1
15 15 O 1.21283 * 120.00237 * 185.25254 * 14 4 2
16 16 C 1.50697 * 120.00153 * 5.25756 * 14 4 2
17 17 N 1.46900 * 109.47236 * 173.86347 * 16 14 4
18 18 C 1.46893 * 111.00309 * 293.95225 * 17 16 14
19 19 C 1.39682 * 110.99897 * 169.99728 * 17 16 14
20 20 C 1.38934 * 120.07057 * 59.98263 * 19 17 16
21 21 C 1.38085 * 119.92221 * 180.02562 * 20 19 17
22 22 C 1.38311 * 120.07456 * 359.71732 * 21 20 19
23 23 C 1.38266 * 120.14595 * 0.56204 * 22 21 20
24 24 C 1.38126 * 120.07603 * 359.43604 * 23 22 21
25 25 N 1.48004 * 120.03492 * 180.29970 * 24 23 22
26 26 O 1.21796 * 120.00242 * 0.02562 * 25 24 23
27 27 O 1.21800 * 119.99610 * 180.02562 * 25 24 23
28 28 H 1.08997 * 109.46941 * 295.41156 * 1 2 3
29 29 H 1.09003 * 109.47268 * 55.41649 * 1 2 3
30 30 H 1.09005 * 109.46961 * 175.41637 * 1 2 3
31 31 H 1.09006 * 109.46887 * 239.99841 * 2 1 3
32 32 H 1.09004 * 109.46998 * 184.73381 * 3 2 1
33 33 H 1.08997 * 109.47374 * 304.73144 * 3 2 1
34 34 H 1.08997 * 109.47104 * 64.73379 * 3 2 1
35 35 H 1.09008 * 109.47068 * 30.00311 * 5 4 2
36 36 H 1.09000 * 109.47159 * 150.00122 * 5 4 2
37 37 H 0.96997 * 120.00187 * 180.02562 * 9 8 6
38 38 H 1.08999 * 109.47418 * 53.86313 * 16 14 4
39 39 H 1.09003 * 109.46887 * 293.86576 * 16 14 4
40 40 H 1.09000 * 109.47270 * 296.05210 * 18 17 16
41 41 H 1.09007 * 109.46842 * 56.04770 * 18 17 16
42 42 H 1.08997 * 109.47827 * 176.04713 * 18 17 16
43 43 H 1.07994 * 120.03854 * 359.97438 * 20 19 17
44 44 H 1.08001 * 119.96284 * 179.97438 * 21 20 19
45 45 H 1.07997 * 119.92589 * 180.27404 * 22 21 20
46 46 H 1.08000 * 119.95972 * 179.72204 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 7 2.0184 -0.6906 1.1961
5 6 1.5850 -0.2504 2.5244
6 6 2.5401 0.7928 3.0443
7 1 3.3857 1.0972 2.4454
8 6 2.3345 1.3588 4.2847
9 7 1.3045 0.9886 5.0138
10 14 3.5189 2.6514 4.9295
11 1 4.5860 2.8902 3.9248
12 1 2.7827 3.9167 5.1791
13 1 4.1291 2.1755 6.1969
14 6 2.8664 -1.7311 1.0745
15 8 3.1959 -2.3628 2.0559
16 6 3.4053 -2.1094 -0.2810
17 7 4.4115 -3.1690 -0.1297
18 6 5.5926 -2.6746 0.5903
19 6 4.7684 -3.7014 -1.3708
20 6 5.3224 -2.8820 -2.3464
21 6 5.6736 -3.4114 -3.5724
22 6 5.4798 -4.7569 -3.8276
23 6 4.9233 -5.5739 -2.8609
24 6 4.5698 -5.0508 -1.6323
25 7 3.9803 -5.9276 -0.5958
26 8 3.8072 -7.1110 -0.8257
27 8 3.6684 -5.4655 0.4871
28 1 -0.3633 0.4410 0.9282
29 1 -0.3634 0.5833 -0.8461
30 1 -0.3633 -1.0244 -0.0821
31 1 1.8933 -0.5139 -0.8900
32 1 3.1267 1.4436 -0.0848
33 1 1.6091 1.9802 -0.8445
34 1 1.7476 1.9312 0.9293
35 1 0.5836 0.1750 2.4574
36 1 1.5729 -1.1028 3.2037
37 1 1.1596 1.3870 5.8863
38 1 3.8638 -1.2368 -0.7463
39 1 2.5900 -2.4695 -0.9086
40 1 6.0768 -1.8952 0.0020
41 1 5.2862 -2.2655 1.5532
42 1 6.2910 -3.4960 0.7502
43 1 5.4775 -1.8321 -2.1465
44 1 6.1040 -2.7750 -4.3315
45 1 5.7594 -5.1693 -4.7858
46 1 4.7692 -6.6232 -3.0649
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000079867041.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:28:24
Heat of formation + Delta-G solvation = 19.036704 kcal
Electronic energy + Delta-G solvation = -30160.030438 eV
Core-core repulsion = 26054.402197 eV
Total energy + Delta-G solvation = -4105.628241 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.168 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-41.96976 -40.31205 -39.10418 -36.94953 -36.09329 -35.62665 -32.83874 -32.20576
-30.83835 -30.63664 -28.88333 -26.89623 -26.75061 -26.41825 -25.08253 -23.02838
-22.47100 -21.64568 -21.10890 -19.18182 -18.27872 -18.06534 -17.37730 -17.20024
-16.46340 -16.43897 -15.90500 -15.50005 -15.34012 -14.78646 -14.70871 -14.48470
-13.92191 -13.65036 -13.45690 -13.15073 -13.03924 -12.70931 -12.65324 -12.36321
-12.14224 -11.79324 -11.73027 -11.56053 -11.40031 -11.21407 -11.19340 -10.92522
-10.87219 -10.84968 -10.72837 -10.60694 -10.37230 -9.99566 -9.89515 -9.53738
-9.47752 -8.97812 -8.43514 -8.41492 -7.60610 -6.02840 -4.06565 -0.17774
0.53425 1.41059 1.59000 2.94518 3.23925 3.28575 3.36732 3.38741
3.44879 3.98391 4.14764 4.30596 4.44499 4.49345 4.56427 4.66701
4.94415 5.08801 5.13739 5.20888 5.28642 5.31922 5.35658 5.44927
5.50733 5.54054 5.60573 5.64299 5.67993 5.95108 5.99490 6.11596
6.20671 6.21267 6.30282 6.56020 6.57888 6.61946 6.91892 6.98234
7.16919 7.52774 7.59951 7.94451 7.95471 8.26387 8.46255 8.92988
9.14522 9.57643 11.05131
Molecular weight = 335.17amu
Principal moments of inertia in cm(-1)
A = 0.015387 B = 0.003330 C = 0.003220
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1819.239254 B = 8407.554699 C = 8694.890464
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.163 4.163
2 C 0.135 3.865
3 C -0.161 4.161
4 N -0.595 5.595
5 C 0.246 3.754
6 C -0.520 4.520
7 H 0.058 0.942
8 C 0.061 3.939
9 N -0.892 5.892
10 Si 0.894 3.106
11 H -0.275 1.275
12 H -0.285 1.285
13 H -0.283 1.283
14 C 0.509 3.491
15 O -0.509 6.509
16 C 0.043 3.957
17 N -0.481 5.481
18 C 0.029 3.971
19 C 0.164 3.836
20 C -0.154 4.154
21 C -0.062 4.062
22 C -0.126 4.126
23 C -0.055 4.055
24 C -0.026 4.026
25 N 0.020 4.980
26 O -0.210 6.210
27 O -0.073 6.073
28 H 0.073 0.927
29 H 0.058 0.942
30 H 0.052 0.948
31 H 0.067 0.933
32 H 0.048 0.952
33 H 0.048 0.952
34 H 0.086 0.914
35 H 0.035 0.965
36 H 0.045 0.955
37 H 0.262 0.738
38 H 0.063 0.937
39 H 0.094 0.906
40 H 0.027 0.973
41 H 0.106 0.894
42 H 0.067 0.933
43 H 0.144 0.856
44 H 0.141 0.859
45 H 0.145 0.855
46 H 0.153 0.847
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.064 -5.721 -21.813 23.632
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.221 4.221
2 C 0.030 3.970
3 C -0.219 4.219
4 N -0.329 5.329
5 C 0.127 3.873
6 C -0.559 4.559
7 H 0.076 0.924
8 C -0.141 4.141
9 N -0.531 5.531
10 Si 0.722 3.278
11 H -0.199 1.199
12 H -0.211 1.211
13 H -0.209 1.209
14 C 0.294 3.706
15 O -0.384 6.384
16 C -0.087 4.087
17 N -0.203 5.203
18 C -0.116 4.116
19 C 0.068 3.932
20 C -0.175 4.175
21 C -0.081 4.081
22 C -0.145 4.145
23 C -0.074 4.074
24 C -0.111 4.111
25 N 0.542 4.458
26 O -0.409 6.409
27 O -0.308 6.308
28 H 0.091 0.909
29 H 0.077 0.923
30 H 0.071 0.929
31 H 0.085 0.915
32 H 0.067 0.933
33 H 0.067 0.933
34 H 0.105 0.895
35 H 0.053 0.947
36 H 0.063 0.937
37 H 0.072 0.928
38 H 0.081 0.919
39 H 0.112 0.888
40 H 0.045 0.955
41 H 0.125 0.875
42 H 0.086 0.914
43 H 0.161 0.839
44 H 0.158 0.842
45 H 0.163 0.837
46 H 0.171 0.829
Dipole moment (debyes) X Y Z Total
from point charges 7.222 -6.095 -21.369 23.365
hybrid contribution 0.813 1.261 0.058 1.501
sum 8.035 -4.834 -21.311 23.283
Atomic orbital electron populations
1.22160 0.95355 1.01695 1.02869 1.20944 0.94420 0.93898 0.87727
1.22202 1.00527 0.95972 1.03193 1.48296 1.45480 1.30404 1.08691
1.19263 0.95208 0.95745 0.77098 1.21463 1.10946 1.21531 1.02001
0.92420 1.24927 0.95501 0.97122 0.96555 1.69940 1.28410 1.42984
1.11813 0.86516 0.81044 0.81256 0.79012 1.19947 1.21088 1.20933
1.19804 0.80410 0.80888 0.89533 1.90703 1.57672 1.51006 1.38974
1.22167 0.95382 0.92698 0.98436 1.59359 1.12693 1.35098 1.13103
1.22599 0.89794 0.98794 1.00405 1.18765 0.92586 0.90740 0.91158
1.21901 1.00522 1.01259 0.93827 1.21482 0.94835 0.95386 0.96348
1.21203 1.00158 0.93480 0.99639 1.21058 0.94244 1.02071 0.90056
1.21262 1.08525 0.90431 0.90837 1.43457 0.99341 1.00881 1.02104
1.94491 1.60502 0.99562 1.86375 1.94771 1.49111 1.78168 1.08763
0.90853 0.92337 0.92913 0.91468 0.93285 0.93271 0.89473 0.94705
0.93734 0.92820 0.91934 0.88773 0.95462 0.87525 0.91425 0.83856
0.84159 0.83730 0.82901
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.37 9.19 37.16 0.34 -2.03 16
2 C 0.13 2.10 3.11 -67.93 -0.21 1.89 16
3 C -0.16 -2.48 8.75 37.15 0.33 -2.15 16
4 N -0.59 -12.05 2.39 -167.48 -0.40 -12.45 16
5 C 0.25 6.18 4.74 -5.20 -0.02 6.16 16
6 C -0.52 -13.99 7.71 -34.44 -0.27 -14.25 16
7 H 0.06 1.54 7.59 -52.49 -0.40 1.14 16
8 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16
9 N -0.89 -26.04 13.29 55.43 0.74 -25.30 16
10 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16
11 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16
12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16
13 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16
14 C 0.51 10.30 7.22 -10.99 -0.08 10.22 16
15 O -0.51 -12.55 14.21 5.56 0.08 -12.47 16
16 C 0.04 0.63 3.36 -4.98 -0.02 0.62 16
17 N -0.48 -7.27 2.31 -180.33 -0.42 -7.68 16
18 C 0.03 0.43 9.03 60.06 0.54 0.97 16
19 C 0.16 2.00 4.67 -83.78 -0.39 1.61 16
20 C -0.15 -1.33 8.66 -39.38 -0.34 -1.67 16
21 C -0.06 -0.37 10.04 -39.61 -0.40 -0.77 16
22 C -0.13 -0.77 10.04 -39.54 -0.40 -1.17 16
23 C -0.05 -0.50 9.55 -39.61 -0.38 -0.87 16
24 C -0.03 -0.34 6.87 -79.76 -0.55 -0.88 16
25 N 0.02 0.32 4.45 34.06 0.15 0.47 16
26 O -0.21 -3.44 18.45 -29.46 -0.54 -3.98 16
27 O -0.07 -1.40 17.10 -29.46 -0.50 -1.91 16
28 H 0.07 1.24 6.33 -51.93 -0.33 0.91 16
29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16
30 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16
31 H 0.07 0.86 5.86 -51.93 -0.30 0.55 16
32 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16
33 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16
34 H 0.09 1.64 6.59 -51.93 -0.34 1.30 16
35 H 0.04 0.89 6.11 -51.92 -0.32 0.57 16
36 H 0.04 1.30 7.36 -51.93 -0.38 0.92 16
37 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16
38 H 0.06 0.78 7.13 -51.93 -0.37 0.41 16
39 H 0.09 1.29 7.69 -51.93 -0.40 0.89 16
40 H 0.03 0.32 7.34 -51.93 -0.38 -0.06 16
41 H 0.11 1.93 6.04 -51.93 -0.31 1.61 16
42 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16
43 H 0.14 1.06 7.14 -52.49 -0.37 0.68 16
44 H 0.14 0.43 8.06 -52.49 -0.42 0.01 16
45 H 0.14 0.44 8.06 -52.49 -0.42 0.01 16
46 H 0.15 1.19 7.61 -52.49 -0.40 0.79 16
LS Contribution 379.37 15.07 5.72 5.72
Total: -1.00 -33.95 379.37 -8.55 -42.49
By element:
Atomic # 1 Polarization: 5.94 SS G_CDS: -6.41 Total: -0.46 kcal
Atomic # 6 Polarization: 1.20 SS G_CDS: -1.94 Total: -0.74 kcal
Atomic # 7 Polarization: -45.04 SS G_CDS: 0.07 Total: -44.96 kcal
Atomic # 8 Polarization: -17.39 SS G_CDS: -0.97 Total: -18.36 kcal
Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal
Total LS contribution 5.72 Total: 5.72 kcal
Total: -33.95 -8.55 -42.49 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000079867041.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 61.531 kcal
(2) G-P(sol) polarization free energy of solvation -33.950 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.582 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.545 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.495 kcal
(6) G-S(sol) free energy of system = (1) + (5) 19.037 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds