Wall clock time and date at job start Tue Mar 31 2020 19:28:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.52994 * 109.47043 * 2 1
4 4 N 1.46495 * 109.47164 * 120.00281 * 2 1 3
5 5 C 1.46496 * 120.00214 * 304.50595 * 4 2 1
6 6 C 1.50694 * 109.47153 * 270.00545 * 5 4 2
7 7 H 1.07995 * 120.00387 * 359.97438 * 6 5 4
8 8 C 1.37882 * 120.00252 * 179.97438 * 6 5 4
9 9 N 1.31516 * 119.99671 * 359.97438 * 8 6 5
10 10 Si 1.86797 * 120.00355 * 179.97438 * 8 6 5
11 11 H 1.48494 * 109.47185 * 0.02562 * 10 8 6
12 12 H 1.48502 * 109.46704 * 120.00060 * 10 8 6
13 13 H 1.48497 * 109.47317 * 239.99819 * 10 8 6
14 14 C 1.34777 * 119.99980 * 124.50746 * 4 2 1
15 15 O 1.21283 * 120.00237 * 185.25254 * 14 4 2
16 16 C 1.50697 * 120.00153 * 5.25756 * 14 4 2
17 17 N 1.46900 * 109.47236 * 173.86347 * 16 14 4
18 18 C 1.46893 * 111.00309 * 293.95225 * 17 16 14
19 19 C 1.39682 * 110.99897 * 169.99728 * 17 16 14
20 20 C 1.38934 * 120.07057 * 59.98263 * 19 17 16
21 21 C 1.38085 * 119.92221 * 180.02562 * 20 19 17
22 22 C 1.38311 * 120.07456 * 359.71732 * 21 20 19
23 23 C 1.38266 * 120.14595 * 0.56204 * 22 21 20
24 24 C 1.38126 * 120.07603 * 359.43604 * 23 22 21
25 25 N 1.48004 * 120.03492 * 180.29970 * 24 23 22
26 26 O 1.21796 * 120.00242 * 0.02562 * 25 24 23
27 27 O 1.21800 * 119.99610 * 180.02562 * 25 24 23
28 28 H 1.08997 * 109.46941 * 295.41156 * 1 2 3
29 29 H 1.09003 * 109.47268 * 55.41649 * 1 2 3
30 30 H 1.09005 * 109.46961 * 175.41637 * 1 2 3
31 31 H 1.09006 * 109.46887 * 239.99841 * 2 1 3
32 32 H 1.09004 * 109.46998 * 184.73381 * 3 2 1
33 33 H 1.08997 * 109.47374 * 304.73144 * 3 2 1
34 34 H 1.08997 * 109.47104 * 64.73379 * 3 2 1
35 35 H 1.09008 * 109.47068 * 30.00311 * 5 4 2
36 36 H 1.09000 * 109.47159 * 150.00122 * 5 4 2
37 37 H 0.96997 * 120.00187 * 180.02562 * 9 8 6
38 38 H 1.08999 * 109.47418 * 53.86313 * 16 14 4
39 39 H 1.09003 * 109.46887 * 293.86576 * 16 14 4
40 40 H 1.09000 * 109.47270 * 296.05210 * 18 17 16
41 41 H 1.09007 * 109.46842 * 56.04770 * 18 17 16
42 42 H 1.08997 * 109.47827 * 176.04713 * 18 17 16
43 43 H 1.07994 * 120.03854 * 359.97438 * 20 19 17
44 44 H 1.08001 * 119.96284 * 179.97438 * 21 20 19
45 45 H 1.07997 * 119.92589 * 180.27404 * 22 21 20
46 46 H 1.08000 * 119.95972 * 179.72204 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 7 2.0184 -0.6906 1.1961
5 6 1.5850 -0.2504 2.5244
6 6 2.5401 0.7928 3.0443
7 1 3.3857 1.0972 2.4454
8 6 2.3345 1.3588 4.2847
9 7 1.3045 0.9886 5.0138
10 14 3.5189 2.6514 4.9295
11 1 4.5860 2.8902 3.9248
12 1 2.7827 3.9167 5.1791
13 1 4.1291 2.1755 6.1969
14 6 2.8664 -1.7311 1.0745
15 8 3.1959 -2.3628 2.0559
16 6 3.4053 -2.1094 -0.2810
17 7 4.4115 -3.1690 -0.1297
18 6 5.5926 -2.6746 0.5903
19 6 4.7684 -3.7014 -1.3708
20 6 5.3224 -2.8820 -2.3464
21 6 5.6736 -3.4114 -3.5724
22 6 5.4798 -4.7569 -3.8276
23 6 4.9233 -5.5739 -2.8609
24 6 4.5698 -5.0508 -1.6323
25 7 3.9803 -5.9276 -0.5958
26 8 3.8072 -7.1110 -0.8257
27 8 3.6684 -5.4655 0.4871
28 1 -0.3633 0.4410 0.9282
29 1 -0.3634 0.5833 -0.8461
30 1 -0.3633 -1.0244 -0.0821
31 1 1.8933 -0.5139 -0.8900
32 1 3.1267 1.4436 -0.0848
33 1 1.6091 1.9802 -0.8445
34 1 1.7476 1.9312 0.9293
35 1 0.5836 0.1750 2.4574
36 1 1.5729 -1.1028 3.2037
37 1 1.1596 1.3870 5.8863
38 1 3.8638 -1.2368 -0.7463
39 1 2.5900 -2.4695 -0.9086
40 1 6.0768 -1.8952 0.0020
41 1 5.2862 -2.2655 1.5532
42 1 6.2910 -3.4960 0.7502
43 1 5.4775 -1.8321 -2.1465
44 1 6.1040 -2.7750 -4.3315
45 1 5.7594 -5.1693 -4.7858
46 1 4.7692 -6.6232 -3.0649
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000079867041.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:28:24
Heat of formation + Delta-G solvation = -1.966642 kcal
Electronic energy + Delta-G solvation = -30160.941211 eV
Core-core repulsion = 26054.402197 eV
Total energy + Delta-G solvation = -4106.539014 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.168 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-43.05876 -41.40677 -40.39033 -38.05053 -37.41266 -36.98569 -34.90485 -32.95123
-32.38850 -31.51278 -30.34968 -28.49653 -27.98733 -27.51557 -26.15866 -24.68719
-23.49650 -22.75916 -22.31100 -20.14570 -19.57336 -19.38911 -18.58305 -18.48555
-18.33598 -17.55933 -16.95500 -16.74507 -16.38796 -16.28329 -15.83867 -15.54521
-15.25864 -14.86827 -14.83141 -14.38300 -14.22107 -13.95992 -13.80336 -13.36987
-13.33655 -13.22598 -13.01026 -12.86216 -12.81948 -12.70859 -12.56320 -12.49027
-12.45914 -12.18500 -12.07746 -12.06016 -12.03764 -11.63072 -11.45927 -10.59164
-10.57367 -10.54157 -10.14277 -9.53292 -9.34639 -8.16550 -6.28763 -1.14630
-0.09228 0.41434 0.61914 1.36677 1.39546 1.50131 1.86204 2.10971
2.32368 2.40352 2.67356 3.13208 3.45854 3.57108 3.76502 3.86130
3.96129 3.99836 4.02963 4.07136 4.17283 4.29806 4.32082 4.38289
4.40437 4.53982 4.83956 4.85632 4.86668 4.97569 5.00265 5.03686
5.05649 5.13403 5.14097 5.26564 5.32534 5.45114 5.49967 5.56224
5.62026 5.68172 5.93971 6.06843 6.14405 6.65913 6.78424 6.87883
7.35246 7.57961 8.91035
Molecular weight = 335.17amu
Principal moments of inertia in cm(-1)
A = 0.015387 B = 0.003330 C = 0.003220
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1819.239254 B = 8407.554699 C = 8694.890464
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.159 4.159
2 C 0.127 3.873
3 C -0.154 4.154
4 N -0.600 5.600
5 C 0.264 3.736
6 C -0.521 4.521
7 H 0.059 0.941
8 C 0.004 3.996
9 N -0.932 5.932
10 Si 0.963 3.037
11 H -0.262 1.262
12 H -0.273 1.273
13 H -0.287 1.287
14 C 0.497 3.503
15 O -0.568 6.568
16 C 0.061 3.939
17 N -0.509 5.509
18 C 0.039 3.961
19 C 0.142 3.858
20 C -0.150 4.150
21 C -0.036 4.036
22 C -0.106 4.106
23 C -0.057 4.057
24 C -0.055 4.055
25 N 0.027 4.973
26 O -0.198 6.198
27 O -0.166 6.166
28 H 0.038 0.962
29 H 0.098 0.902
30 H 0.051 0.949
31 H 0.110 0.890
32 H 0.050 0.950
33 H 0.089 0.911
34 H 0.045 0.955
35 H 0.025 0.975
36 H -0.012 1.012
37 H 0.264 0.736
38 H 0.099 0.901
39 H 0.110 0.890
40 H 0.059 0.941
41 H 0.061 0.939
42 H 0.064 0.936
43 H 0.162 0.838
44 H 0.187 0.813
45 H 0.189 0.811
46 H 0.162 0.838
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.352 -4.174 -27.734 29.565
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.217 4.217
2 C 0.024 3.976
3 C -0.212 4.212
4 N -0.332 5.332
5 C 0.143 3.857
6 C -0.560 4.560
7 H 0.077 0.923
8 C -0.194 4.194
9 N -0.573 5.573
10 Si 0.788 3.212
11 H -0.186 1.186
12 H -0.198 1.198
13 H -0.214 1.214
14 C 0.284 3.716
15 O -0.447 6.447
16 C -0.068 4.068
17 N -0.231 5.231
18 C -0.107 4.107
19 C 0.046 3.954
20 C -0.171 4.171
21 C -0.054 4.054
22 C -0.124 4.124
23 C -0.076 4.076
24 C -0.140 4.140
25 N 0.540 4.460
26 O -0.407 6.407
27 O -0.381 6.381
28 H 0.058 0.942
29 H 0.116 0.884
30 H 0.070 0.930
31 H 0.128 0.872
32 H 0.070 0.930
33 H 0.108 0.892
34 H 0.064 0.936
35 H 0.043 0.957
36 H 0.006 0.994
37 H 0.072 0.928
38 H 0.116 0.884
39 H 0.128 0.872
40 H 0.077 0.923
41 H 0.079 0.921
42 H 0.083 0.917
43 H 0.179 0.821
44 H 0.204 0.796
45 H 0.206 0.794
46 H 0.180 0.820
Dipole moment (debyes) X Y Z Total
from point charges 9.478 -4.444 -27.228 29.171
hybrid contribution 0.153 0.650 1.620 1.752
sum 9.631 -3.794 -25.608 27.621
Atomic orbital electron populations
1.22135 0.94696 1.02090 1.02747 1.21375 0.95067 0.94254 0.86897
1.22124 1.00885 0.95519 1.02705 1.48322 1.45565 1.30962 1.08380
1.18639 0.94791 0.93045 0.79206 1.21690 1.10841 1.21313 1.02166
0.92279 1.25841 0.97217 0.99466 0.96925 1.70081 1.30379 1.44545
1.12261 0.85434 0.78999 0.78678 0.78100 1.18636 1.19824 1.21370
1.20889 0.79467 0.79812 0.91396 1.90678 1.59479 1.52853 1.41646
1.21997 0.96153 0.94243 0.94363 1.59001 1.12884 1.35428 1.15744
1.22390 0.89926 0.99355 0.98986 1.18829 0.94908 0.90842 0.90821
1.22121 0.99595 1.01604 0.93761 1.22043 0.91902 0.95729 0.95747
1.21753 0.97355 0.93203 1.00056 1.21403 0.94017 1.03170 0.89007
1.21588 1.11094 0.90338 0.90940 1.44058 0.98365 1.01050 1.02515
1.94415 1.59248 1.00853 1.86166 1.94794 1.53563 1.78462 1.11292
0.94242 0.88378 0.92990 0.87210 0.93049 0.89236 0.93597 0.95731
0.99415 0.92751 0.88378 0.87157 0.92265 0.92066 0.91725 0.82057
0.79571 0.79406 0.82034
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -4.47 9.19 71.98 0.66 -3.81 16
2 C 0.13 3.77 3.11 44.99 0.14 3.91 16
3 C -0.15 -4.43 8.75 71.98 0.63 -3.80 16
4 N -0.60 -25.24 2.39 -802.16 -1.91 -27.15 16
5 C 0.26 14.33 4.74 85.63 0.41 14.74 16
6 C -0.52 -29.36 7.71 25.60 0.20 -29.16 16
7 H 0.06 3.23 7.59 -2.91 -0.02 3.21 16
8 C 0.00 0.21 5.46 84.66 0.46 0.67 16
9 N -0.93 -57.25 13.29 21.45 0.28 -56.97 16
10 Si 0.96 44.88 29.54 68.60 2.03 46.91 16
11 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16
12 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16
13 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16
14 C 0.50 21.12 7.22 87.66 0.63 21.75 16
15 O -0.57 -30.74 14.21 -3.04 -0.04 -30.78 16
16 C 0.06 1.77 3.36 85.56 0.29 2.06 16
17 N -0.51 -15.53 2.31 -724.45 -1.67 -17.20 16
18 C 0.04 1.18 9.03 127.69 1.15 2.33 16
19 C 0.14 3.19 4.67 38.21 0.18 3.37 16
20 C -0.15 -1.82 8.66 22.40 0.19 -1.63 16
21 C -0.04 -0.18 10.04 22.25 0.22 0.05 16
22 C -0.11 -0.61 10.04 22.29 0.22 -0.39 16
23 C -0.06 -0.82 9.55 22.25 0.21 -0.61 16
24 C -0.05 -1.34 6.87 36.51 0.25 -1.09 16
25 N 0.03 0.93 4.45 -46.17 -0.21 0.72 16
26 O -0.20 -6.67 18.45 18.89 0.35 -6.32 16
27 O -0.17 -7.05 17.10 18.89 0.32 -6.72 16
28 H 0.04 1.37 6.33 -2.39 -0.02 1.36 16
29 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16
30 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16
31 H 0.11 2.37 5.86 -2.38 -0.01 2.36 16
32 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16
33 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16
34 H 0.04 1.71 6.59 -2.39 -0.02 1.69 16
35 H 0.02 1.37 6.11 -2.38 -0.01 1.36 16
36 H -0.01 -0.80 7.36 -2.39 -0.02 -0.81 16
37 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16
38 H 0.10 2.10 7.13 -2.39 -0.02 2.08 16
39 H 0.11 2.81 7.69 -2.39 -0.02 2.80 16
40 H 0.06 1.32 7.34 -2.39 -0.02 1.30 16
41 H 0.06 2.40 6.04 -2.38 -0.01 2.39 16
42 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16
43 H 0.16 1.39 7.14 -2.91 -0.02 1.37 16
44 H 0.19 -0.59 8.06 -2.91 -0.02 -0.62 16
45 H 0.19 -0.41 8.06 -2.91 -0.02 -0.43 16
46 H 0.16 2.02 7.61 -2.91 -0.02 2.00 16
Total: -1.00 -87.22 379.37 6.00 -81.22
By element:
Atomic # 1 Polarization: 6.91 SS G_CDS: 1.00 Total: 7.91 kcal
Atomic # 6 Polarization: 2.54 SS G_CDS: 5.85 Total: 8.39 kcal
Atomic # 7 Polarization: -97.09 SS G_CDS: -3.51 Total: -100.60 kcal
Atomic # 8 Polarization: -44.45 SS G_CDS: 0.63 Total: -43.83 kcal
Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal
Total: -87.22 6.00 -81.22 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000079867041.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 79.253 kcal
(2) G-P(sol) polarization free energy of solvation -87.216 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.963 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.997 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.220 kcal
(6) G-S(sol) free energy of system = (1) + (5) -1.967 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds