Wall clock time and date at job start Tue Mar 31 2020 19:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47434 * 2 1 4 4 N 1.46499 * 109.47488 * 180.02562 * 3 2 1 5 5 C 1.36943 * 119.99726 * 270.00042 * 4 3 2 6 6 H 1.08001 * 120.00205 * 344.89755 * 5 4 3 7 7 C 1.38812 * 119.99696 * 164.89851 * 5 4 3 8 8 N 1.31614 * 120.00060 * 42.78004 * 7 5 4 9 9 Si 1.86800 * 119.99954 * 222.77548 * 7 5 4 10 10 H 1.48508 * 109.47184 * 60.00378 * 9 7 5 11 11 H 1.48498 * 109.47198 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47202 * 300.00473 * 9 7 5 13 13 C 1.46496 * 120.00354 * 89.99569 * 4 3 2 14 14 C 1.50705 * 109.46878 * 82.33002 * 13 4 3 15 15 C 1.39822 * 126.07847 * 278.27968 * 14 13 4 16 16 C 1.50696 * 125.86256 * 0.02833 * 15 14 13 17 17 N 1.30835 * 108.27634 * 179.85328 * 15 14 13 18 18 N 1.40067 * 108.34302 * 0.40933 * 17 15 14 19 19 C 1.46499 * 126.03410 * 179.76049 * 18 17 15 20 20 C 1.35125 * 107.92710 * 359.73621 * 18 17 15 21 21 O 1.35758 * 126.19259 * 179.97438 * 20 18 17 22 22 C 1.42893 * 117.00274 * 11.26713 * 21 20 18 23 23 C 1.53000 * 109.47744 * 182.67078 * 22 21 20 24 24 F 1.39899 * 109.46794 * 59.99783 * 23 22 21 25 25 F 1.39896 * 109.47554 * 180.02562 * 23 22 21 26 26 F 1.39904 * 109.46951 * 300.00251 * 23 22 21 27 27 H 1.09004 * 109.46942 * 300.00117 * 1 2 3 28 28 H 1.08999 * 109.47170 * 60.00034 * 1 2 3 29 29 H 1.08997 * 109.47671 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46942 * 239.99883 * 2 1 3 31 31 H 1.09008 * 109.46919 * 119.99918 * 2 1 3 32 32 H 1.09004 * 109.47151 * 60.00011 * 3 2 1 33 33 H 1.09000 * 109.47383 * 300.00371 * 3 2 1 34 34 H 0.97005 * 120.00053 * 180.02562 * 8 7 5 35 35 H 1.08994 * 109.47353 * 202.32727 * 13 4 3 36 36 H 1.09000 * 109.47191 * 322.33593 * 13 4 3 37 37 H 1.08996 * 109.47688 * 89.99878 * 16 15 14 38 38 H 1.09001 * 109.47159 * 210.00108 * 16 15 14 39 39 H 1.09004 * 109.46912 * 329.99248 * 16 15 14 40 40 H 1.08995 * 109.47143 * 257.66306 * 19 18 17 41 41 H 1.09006 * 109.47346 * 17.66435 * 19 18 17 42 42 H 1.09001 * 109.47001 * 137.66834 * 19 18 17 43 43 H 1.09001 * 109.47315 * 302.67233 * 22 21 20 44 44 H 1.09008 * 109.47085 * 62.66946 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1902 1.4423 1.1851 6 1 3.6785 1.6858 2.1045 7 6 5.5424 1.1291 1.2052 8 7 6.3451 1.6192 0.2846 9 14 6.2226 0.0121 2.5390 10 1 5.5492 -1.3097 2.4688 11 1 7.6834 -0.1648 2.3391 12 1 5.9759 0.6231 3.8698 13 6 4.2370 1.4425 -1.2696 14 6 4.3237 2.8507 -1.7993 15 6 3.3282 3.5247 -2.5133 16 6 1.9788 2.9673 -2.8868 17 7 3.7678 4.7236 -2.7981 18 7 5.0640 4.8517 -2.2830 19 6 5.9192 6.0366 -2.3865 20 6 5.3860 3.6897 -1.6732 21 8 6.5583 3.4103 -1.0483 22 6 7.4455 4.5056 -0.8135 23 6 8.7321 3.9902 -0.1654 24 9 9.3464 3.0671 -1.0185 25 9 9.6003 5.0626 0.0650 26 9 8.4256 3.3694 1.0503 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8901 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8899 34 1 7.2900 1.4000 0.2985 35 1 5.2420 1.0522 -1.1094 36 1 3.7139 0.8147 -1.9909 37 1 1.2625 3.1889 -2.0957 38 1 1.6431 3.4222 -3.8187 39 1 2.0549 1.8877 -3.0162 40 1 6.6667 5.8784 -3.1639 41 1 5.3095 6.9039 -2.6399 42 1 6.4180 6.2092 -1.4327 43 1 7.6843 4.9893 -1.7606 44 1 6.9668 5.2249 -0.1488 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130823308.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:32 Heat of formation + Delta-G solvation = -51.516353 kcal Electronic energy + Delta-G solvation = -31922.579661 eV Core-core repulsion = 27272.035270 eV Total energy + Delta-G solvation = -4650.544391 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.156 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -49.75338 -47.36385 -47.08021 -40.82926 -37.64224 -36.14899 -33.40528 -32.86936 -30.84567 -30.58407 -28.90400 -28.60341 -25.96845 -25.37138 -24.14267 -23.10610 -21.80360 -20.54988 -19.87852 -19.07554 -18.26056 -18.07003 -17.35982 -16.76094 -16.37021 -15.87309 -14.84389 -14.64830 -14.34507 -14.24223 -14.18220 -13.86835 -13.70589 -13.61610 -13.56279 -13.33785 -13.30513 -13.25908 -13.07884 -12.81037 -12.60332 -12.45495 -12.12493 -12.05789 -11.95098 -11.42785 -11.17339 -10.95675 -10.80609 -10.64172 -10.57882 -10.44917 -10.24711 -10.16727 -9.75429 -9.57260 -9.38914 -8.23123 -7.93914 -7.20421 -6.75421 -5.77492 -2.81528 2.52816 2.72451 2.94205 3.48224 3.52634 3.62571 3.65682 3.70454 4.05608 4.24449 4.64931 4.69311 4.77100 4.98906 5.17452 5.21631 5.27782 5.39818 5.49785 5.67691 5.71715 5.75115 5.84715 6.04429 6.08370 6.18171 6.23131 6.37403 6.42027 6.51777 6.62880 6.69947 6.84560 6.89901 7.03804 7.21361 7.27263 7.51701 7.91588 8.01569 8.21270 8.42376 8.52926 9.32988 10.02621 10.52232 11.22816 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.010691 B = 0.006197 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2618.483614 B = 4517.558099 C = 6749.650245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.143 4.143 3 C 0.147 3.853 4 N -0.587 5.587 5 C -0.269 4.269 6 H 0.071 0.929 7 C 0.030 3.970 8 N -0.823 5.823 9 Si 0.841 3.159 10 H -0.289 1.289 11 H -0.294 1.294 12 H -0.289 1.289 13 C 0.207 3.793 14 C -0.224 4.224 15 C 0.089 3.911 16 C -0.066 4.066 17 N -0.318 5.318 18 N -0.423 5.423 19 C 0.090 3.910 20 C 0.288 3.712 21 O -0.181 6.181 22 C -0.010 4.010 23 C 0.467 3.533 24 F -0.176 7.176 25 F -0.188 7.188 26 F -0.156 7.156 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.042 0.958 30 H 0.051 0.949 31 H 0.059 0.941 32 H 0.035 0.965 33 H 0.046 0.954 34 H 0.255 0.745 35 H 0.125 0.875 36 H 0.016 0.984 37 H 0.075 0.925 38 H 0.062 0.938 39 H 0.076 0.924 40 H 0.066 0.934 41 H 0.089 0.911 42 H 0.078 0.922 43 H 0.090 0.910 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.093 6.547 -6.096 8.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.183 4.183 3 C 0.020 3.980 4 N -0.307 5.307 5 C -0.396 4.396 6 H 0.089 0.911 7 C -0.169 4.169 8 N -0.466 5.466 9 Si 0.669 3.331 10 H -0.216 1.216 11 H -0.220 1.220 12 H -0.215 1.215 13 C 0.081 3.919 14 C -0.237 4.237 15 C -0.076 4.076 16 C -0.124 4.124 17 N -0.145 5.145 18 N -0.220 5.220 19 C -0.052 4.052 20 C 0.121 3.879 21 O -0.083 6.083 22 C -0.089 4.089 23 C 0.413 3.587 24 F -0.158 7.158 25 F -0.170 7.170 26 F -0.137 7.137 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.142 0.858 36 H 0.034 0.966 37 H 0.093 0.907 38 H 0.081 0.919 39 H 0.095 0.905 40 H 0.085 0.915 41 H 0.108 0.892 42 H 0.097 0.903 43 H 0.108 0.892 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.137 7.500 -6.519 9.938 hybrid contribution 1.019 -0.843 1.414 1.936 sum 1.156 6.657 -5.106 8.469 Atomic orbital electron populations 1.21735 0.97621 1.00291 1.00841 1.22133 0.93298 1.01209 1.01683 1.20910 0.84809 0.93292 0.99002 1.44202 0.99352 1.84715 1.02437 1.18942 0.92781 1.42198 0.85659 0.91071 1.24743 0.95436 1.00313 0.96432 1.69808 1.03448 1.37676 1.35672 0.87194 0.77412 0.84957 0.83532 1.21609 1.22042 1.21515 1.20125 1.00514 0.86950 0.84318 1.20358 0.90458 1.02750 1.10163 1.21946 0.96812 0.91579 0.97278 1.20188 0.90622 1.00699 1.00928 1.77168 0.92107 1.19733 1.25506 1.48698 1.13800 1.11552 1.47929 1.22102 0.93790 0.87162 1.02141 1.19625 0.88565 0.86745 0.92965 1.87382 1.23823 1.24813 1.72286 1.24188 0.90177 0.92957 1.01538 1.19955 0.85149 0.75516 0.78078 1.93196 1.84735 1.67448 1.70396 1.93159 1.72262 1.56620 1.94921 1.93303 1.92690 1.82800 1.44919 0.93455 0.93467 0.93923 0.93033 0.92236 0.94684 0.93625 0.93353 0.85819 0.96600 0.90699 0.91898 0.90490 0.91522 0.89217 0.90349 0.89226 0.88849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.91 37.16 0.37 -1.70 16 2 C -0.14 -2.53 6.26 -26.74 -0.17 -2.70 16 3 C 0.15 2.91 5.68 -4.05 -0.02 2.89 16 4 N -0.59 -13.78 2.52 -174.61 -0.44 -14.22 16 5 C -0.27 -7.03 9.57 -15.06 -0.14 -7.17 16 6 H 0.07 1.92 8.04 -52.49 -0.42 1.50 16 7 C 0.03 0.80 4.91 -17.43 -0.09 0.71 16 8 N -0.82 -20.93 6.15 55.49 0.34 -20.59 16 9 Si 0.84 20.84 29.69 -169.99 -5.05 15.79 16 10 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 11 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 12 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 13 C 0.21 4.73 5.28 -5.19 -0.03 4.71 16 14 C -0.22 -4.84 5.68 -104.85 -0.60 -5.44 16 15 C 0.09 1.74 7.18 -82.43 -0.59 1.14 16 16 C -0.07 -1.01 8.59 36.00 0.31 -0.70 16 17 N -0.32 -6.17 12.57 33.66 0.42 -5.75 16 18 N -0.42 -7.71 4.02 -68.29 -0.27 -7.99 16 19 C 0.09 1.13 9.57 59.85 0.57 1.70 16 20 C 0.29 6.00 7.64 -16.93 -0.13 5.87 16 21 O -0.18 -3.72 6.16 -18.98 -0.12 -3.84 16 22 C -0.01 -0.15 4.29 37.16 0.16 0.01 16 23 C 0.47 7.69 3.32 37.16 0.12 7.81 16 24 F -0.18 -3.06 17.26 2.25 0.04 -3.02 16 25 F -0.19 -2.68 17.32 2.25 0.04 -2.65 16 26 F -0.16 -3.09 15.69 2.25 0.04 -3.06 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.06 1.16 8.14 -51.92 -0.42 0.74 16 32 H 0.03 0.72 8.03 -51.93 -0.42 0.30 16 33 H 0.05 0.83 4.29 -51.93 -0.22 0.60 16 34 H 0.26 6.54 7.36 -40.82 -0.30 6.24 16 35 H 0.12 3.18 4.86 -51.93 -0.25 2.92 16 36 H 0.02 0.34 7.51 -51.93 -0.39 -0.05 16 37 H 0.07 1.10 6.79 -51.93 -0.35 0.75 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.08 1.13 7.31 -51.93 -0.38 0.75 16 40 H 0.07 0.71 7.62 -51.93 -0.40 0.31 16 41 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.08 0.87 4.92 -51.93 -0.26 0.61 16 43 H 0.09 1.12 5.59 -51.93 -0.29 0.83 16 44 H 0.09 1.36 6.94 -51.92 -0.36 1.00 16 LS Contribution 356.81 15.07 5.38 5.38 Total: -1.00 -29.45 356.81 -5.65 -35.10 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: -5.79 Total: -2.27 kcal Atomic # 6 Polarization: 7.35 SS G_CDS: -0.23 Total: 7.12 kcal Atomic # 7 Polarization: -48.60 SS G_CDS: 0.05 Total: -48.55 kcal Atomic # 8 Polarization: -3.72 SS G_CDS: -0.12 Total: -3.84 kcal Atomic # 9 Polarization: -8.84 SS G_CDS: 0.11 Total: -8.72 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.05 Total: 15.79 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.45 -5.65 -35.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130823308.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.419 kcal (2) G-P(sol) polarization free energy of solvation -29.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds