Wall clock time and date at job start Tue Mar 31 2020 19:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47434 * 2 1 4 4 N 1.46499 * 109.47488 * 180.02562 * 3 2 1 5 5 C 1.36943 * 119.99726 * 270.00042 * 4 3 2 6 6 H 1.08001 * 120.00205 * 344.89755 * 5 4 3 7 7 C 1.38812 * 119.99696 * 164.89851 * 5 4 3 8 8 N 1.31614 * 120.00060 * 42.78004 * 7 5 4 9 9 Si 1.86800 * 119.99954 * 222.77548 * 7 5 4 10 10 H 1.48508 * 109.47184 * 60.00378 * 9 7 5 11 11 H 1.48498 * 109.47198 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47202 * 300.00473 * 9 7 5 13 13 C 1.46496 * 120.00354 * 89.99569 * 4 3 2 14 14 C 1.50705 * 109.46878 * 82.33002 * 13 4 3 15 15 C 1.39822 * 126.07847 * 278.27968 * 14 13 4 16 16 C 1.50696 * 125.86256 * 0.02833 * 15 14 13 17 17 N 1.30835 * 108.27634 * 179.85328 * 15 14 13 18 18 N 1.40067 * 108.34302 * 0.40933 * 17 15 14 19 19 C 1.46499 * 126.03410 * 179.76049 * 18 17 15 20 20 C 1.35125 * 107.92710 * 359.73621 * 18 17 15 21 21 O 1.35758 * 126.19259 * 179.97438 * 20 18 17 22 22 C 1.42893 * 117.00274 * 11.26713 * 21 20 18 23 23 C 1.53000 * 109.47744 * 182.67078 * 22 21 20 24 24 F 1.39899 * 109.46794 * 59.99783 * 23 22 21 25 25 F 1.39896 * 109.47554 * 180.02562 * 23 22 21 26 26 F 1.39904 * 109.46951 * 300.00251 * 23 22 21 27 27 H 1.09004 * 109.46942 * 300.00117 * 1 2 3 28 28 H 1.08999 * 109.47170 * 60.00034 * 1 2 3 29 29 H 1.08997 * 109.47671 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46942 * 239.99883 * 2 1 3 31 31 H 1.09008 * 109.46919 * 119.99918 * 2 1 3 32 32 H 1.09004 * 109.47151 * 60.00011 * 3 2 1 33 33 H 1.09000 * 109.47383 * 300.00371 * 3 2 1 34 34 H 0.97005 * 120.00053 * 180.02562 * 8 7 5 35 35 H 1.08994 * 109.47353 * 202.32727 * 13 4 3 36 36 H 1.09000 * 109.47191 * 322.33593 * 13 4 3 37 37 H 1.08996 * 109.47688 * 89.99878 * 16 15 14 38 38 H 1.09001 * 109.47159 * 210.00108 * 16 15 14 39 39 H 1.09004 * 109.46912 * 329.99248 * 16 15 14 40 40 H 1.08995 * 109.47143 * 257.66306 * 19 18 17 41 41 H 1.09006 * 109.47346 * 17.66435 * 19 18 17 42 42 H 1.09001 * 109.47001 * 137.66834 * 19 18 17 43 43 H 1.09001 * 109.47315 * 302.67233 * 22 21 20 44 44 H 1.09008 * 109.47085 * 62.66946 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1902 1.4423 1.1851 6 1 3.6785 1.6858 2.1045 7 6 5.5424 1.1291 1.2052 8 7 6.3451 1.6192 0.2846 9 14 6.2226 0.0121 2.5390 10 1 5.5492 -1.3097 2.4688 11 1 7.6834 -0.1648 2.3391 12 1 5.9759 0.6231 3.8698 13 6 4.2370 1.4425 -1.2696 14 6 4.3237 2.8507 -1.7993 15 6 3.3282 3.5247 -2.5133 16 6 1.9788 2.9673 -2.8868 17 7 3.7678 4.7236 -2.7981 18 7 5.0640 4.8517 -2.2830 19 6 5.9192 6.0366 -2.3865 20 6 5.3860 3.6897 -1.6732 21 8 6.5583 3.4103 -1.0483 22 6 7.4455 4.5056 -0.8135 23 6 8.7321 3.9902 -0.1654 24 9 9.3464 3.0671 -1.0185 25 9 9.6003 5.0626 0.0650 26 9 8.4256 3.3694 1.0503 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8901 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8899 34 1 7.2900 1.4000 0.2985 35 1 5.2420 1.0522 -1.1094 36 1 3.7139 0.8147 -1.9909 37 1 1.2625 3.1889 -2.0957 38 1 1.6431 3.4222 -3.8187 39 1 2.0549 1.8877 -3.0162 40 1 6.6667 5.8784 -3.1639 41 1 5.3095 6.9039 -2.6399 42 1 6.4180 6.2092 -1.4327 43 1 7.6843 4.9893 -1.7606 44 1 6.9668 5.2249 -0.1488 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130823308.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:31 Heat of formation + Delta-G solvation = -67.721996 kcal Electronic energy + Delta-G solvation = -31923.282390 eV Core-core repulsion = 27272.035270 eV Total energy + Delta-G solvation = -4651.247121 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.156 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -51.08162 -48.64792 -48.50552 -42.26549 -39.09167 -37.83450 -34.74951 -34.47504 -32.44312 -32.03207 -30.26043 -30.00143 -27.38870 -27.08389 -25.53628 -24.40994 -23.40809 -22.01990 -21.39933 -20.56693 -19.60373 -19.40511 -18.71105 -18.48757 -17.82678 -17.24154 -16.64551 -16.17249 -15.73788 -15.63293 -15.55534 -15.39895 -15.18681 -14.99372 -14.96444 -14.75657 -14.70079 -14.61252 -14.34402 -14.25150 -14.00839 -13.72790 -13.45292 -13.37646 -13.30628 -13.20743 -12.74615 -12.45979 -12.39670 -12.22225 -12.08874 -11.99516 -11.83746 -11.77731 -11.56690 -11.11808 -11.03081 -9.88666 -9.58174 -8.84285 -8.50442 -7.74542 -4.77177 1.10093 1.36900 1.48434 1.58210 1.61372 1.68857 2.05423 2.27163 2.67468 2.77056 2.96971 3.26911 3.44742 3.59332 3.77760 3.94021 4.06549 4.24656 4.30627 4.38572 4.49866 4.54618 4.57040 4.67149 4.80907 4.85996 4.93669 4.98555 5.08977 5.17502 5.26464 5.28991 5.38155 5.43070 5.57828 5.72284 5.74769 5.89101 6.01654 6.14562 6.56067 6.78078 7.00261 7.38493 8.15929 8.61086 9.20952 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.010691 B = 0.006197 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2618.483614 B = 4517.558099 C = 6749.650245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.135 4.135 3 C 0.145 3.855 4 N -0.599 5.599 5 C -0.280 4.280 6 H 0.054 0.946 7 C 0.007 3.993 8 N -0.811 5.811 9 Si 0.871 3.129 10 H -0.297 1.297 11 H -0.301 1.301 12 H -0.294 1.294 13 C 0.217 3.783 14 C -0.258 4.258 15 C 0.085 3.915 16 C -0.064 4.064 17 N -0.326 5.326 18 N -0.419 5.419 19 C 0.075 3.925 20 C 0.279 3.721 21 O -0.210 6.210 22 C -0.013 4.013 23 C 0.469 3.531 24 F -0.183 7.183 25 F -0.172 7.172 26 F -0.180 7.180 27 H 0.049 0.951 28 H 0.065 0.935 29 H 0.056 0.944 30 H 0.049 0.951 31 H 0.033 0.967 32 H 0.022 0.978 33 H 0.066 0.934 34 H 0.249 0.751 35 H 0.093 0.907 36 H 0.024 0.976 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.091 0.909 41 H 0.106 0.894 42 H 0.095 0.905 43 H 0.128 0.872 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.877 7.948 -7.538 10.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.175 4.175 3 C 0.020 3.980 4 N -0.320 5.320 5 C -0.408 4.408 6 H 0.072 0.928 7 C -0.194 4.194 8 N -0.453 5.453 9 Si 0.701 3.299 10 H -0.225 1.225 11 H -0.228 1.228 12 H -0.221 1.221 13 C 0.090 3.910 14 C -0.272 4.272 15 C -0.081 4.081 16 C -0.122 4.122 17 N -0.154 5.154 18 N -0.216 5.216 19 C -0.065 4.065 20 C 0.111 3.889 21 O -0.112 6.112 22 C -0.091 4.091 23 C 0.415 3.585 24 F -0.165 7.165 25 F -0.154 7.154 26 F -0.161 7.161 27 H 0.068 0.932 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.052 0.948 32 H 0.041 0.959 33 H 0.084 0.916 34 H 0.059 0.941 35 H 0.111 0.889 36 H 0.042 0.958 37 H 0.100 0.900 38 H 0.103 0.897 39 H 0.100 0.900 40 H 0.109 0.891 41 H 0.125 0.875 42 H 0.113 0.887 43 H 0.145 0.855 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -0.644 8.928 -7.977 11.990 hybrid contribution 1.350 -1.196 1.831 2.570 sum 0.706 7.733 -6.146 9.903 Atomic orbital electron populations 1.21660 0.94428 1.01652 1.01922 1.21988 0.96036 0.99206 1.00270 1.21061 0.82972 0.94674 0.99332 1.44288 1.00713 1.85219 1.01799 1.18873 0.92911 1.42733 0.86282 0.92797 1.25021 0.95823 1.01108 0.97402 1.70038 1.02790 1.37140 1.35307 0.86719 0.76405 0.84072 0.82714 1.22545 1.22814 1.22142 1.19761 0.98781 0.88213 0.84198 1.20310 0.92175 1.02591 1.12085 1.22389 0.97769 0.91265 0.96635 1.20277 0.88795 1.00995 1.02127 1.77107 0.92801 1.19722 1.25769 1.48982 1.13755 1.12101 1.46793 1.22548 0.94106 0.85801 1.04004 1.19652 0.88457 0.87721 0.93042 1.87253 1.24307 1.27194 1.72446 1.24480 0.88971 0.91991 1.03628 1.20084 0.85804 0.75511 0.77146 1.93181 1.84909 1.67931 1.70456 1.93187 1.71791 1.55602 1.94791 1.93255 1.92949 1.83430 1.46504 0.93183 0.91574 0.92453 0.93256 0.94844 0.95903 0.91562 0.94053 0.88904 0.95768 0.90035 0.89733 0.90023 0.89064 0.87529 0.88722 0.85452 0.87557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.60 9.91 71.98 0.71 -2.89 16 2 C -0.13 -4.69 6.26 30.59 0.19 -4.50 16 3 C 0.15 5.70 5.68 86.38 0.49 6.19 16 4 N -0.60 -28.41 2.52 -706.35 -1.78 -30.19 16 5 C -0.28 -14.99 9.57 84.03 0.80 -14.19 16 6 H 0.05 3.01 8.04 -2.91 -0.02 2.99 16 7 C 0.01 0.35 4.91 84.86 0.42 0.77 16 8 N -0.81 -41.93 6.15 21.65 0.13 -41.79 16 9 Si 0.87 43.76 29.69 68.60 2.04 45.79 16 10 H -0.30 -15.21 7.11 99.48 0.71 -14.51 16 11 H -0.30 -15.36 7.11 99.48 0.71 -14.65 16 12 H -0.29 -14.94 7.11 99.48 0.71 -14.23 16 13 C 0.22 9.96 5.28 85.64 0.45 10.41 16 14 C -0.26 -11.02 5.68 -20.01 -0.11 -11.14 16 15 C 0.08 3.16 7.18 43.09 0.31 3.47 16 16 C -0.06 -1.80 8.59 71.23 0.61 -1.19 16 17 N -0.33 -11.98 12.57 -47.42 -0.60 -12.58 16 18 N -0.42 -14.36 4.02 -481.28 -1.93 -16.29 16 19 C 0.07 1.63 9.57 127.77 1.22 2.86 16 20 C 0.28 11.37 7.64 83.65 0.64 12.01 16 21 O -0.21 -8.47 6.16 -90.84 -0.56 -9.03 16 22 C -0.01 -0.38 4.29 71.98 0.31 -0.07 16 23 C 0.47 14.90 3.32 71.98 0.24 15.14 16 24 F -0.18 -6.23 17.26 44.97 0.78 -5.45 16 25 F -0.17 -4.59 17.32 44.97 0.78 -3.81 16 26 F -0.18 -7.14 15.69 44.97 0.71 -6.43 16 27 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.05 1.71 8.14 -2.39 -0.02 1.70 16 31 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 32 H 0.02 0.93 8.03 -2.39 -0.02 0.91 16 33 H 0.07 2.30 4.29 -2.39 -0.01 2.29 16 34 H 0.25 12.99 7.36 -92.70 -0.68 12.30 16 35 H 0.09 4.87 4.86 -2.39 -0.01 4.86 16 36 H 0.02 1.03 7.51 -2.39 -0.02 1.02 16 37 H 0.08 2.19 6.79 -2.39 -0.02 2.17 16 38 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.08 2.21 7.31 -2.39 -0.02 2.19 16 40 H 0.09 1.57 7.62 -2.39 -0.02 1.55 16 41 H 0.11 1.99 8.14 -2.38 -0.02 1.98 16 42 H 0.09 1.75 4.92 -2.39 -0.01 1.74 16 43 H 0.13 2.76 5.59 -2.39 -0.01 2.74 16 44 H 0.11 2.86 6.94 -2.38 -0.02 2.84 16 Total: -1.00 -64.70 356.81 6.97 -57.73 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: 1.13 Total: 5.20 kcal Atomic # 6 Polarization: 10.59 SS G_CDS: 6.29 Total: 16.87 kcal Atomic # 7 Polarization: -96.68 SS G_CDS: -4.18 Total: -100.86 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: -0.56 Total: -9.03 kcal Atomic # 9 Polarization: -17.96 SS G_CDS: 2.26 Total: -15.70 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.04 Total: 45.79 kcal Total: -64.70 6.97 -57.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130823308.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.995 kcal (2) G-P(sol) polarization free energy of solvation -64.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds