Wall clock time and date at job start Tue Mar 31 2020 18:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.46747 * 2 1 4 4 C 1.53005 * 109.47033 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.46839 * 179.97438 * 4 3 2 6 6 H 1.08996 * 109.47492 * 305.00411 * 5 4 3 7 7 N 1.46502 * 109.46768 * 65.00545 * 5 4 3 8 8 C 1.34778 * 119.99870 * 59.72286 * 7 5 4 9 9 N 1.34786 * 119.99779 * 180.27569 * 8 7 5 10 10 O 1.21589 * 120.00248 * 0.27434 * 8 7 5 11 11 C 1.50700 * 109.46683 * 185.00007 * 5 4 3 12 12 O 1.21287 * 120.00468 * 260.00219 * 11 5 4 13 13 N 1.34776 * 119.99898 * 80.00971 * 11 5 4 14 14 C 1.39923 * 120.00250 * 174.78965 * 13 11 5 15 15 C 1.38963 * 120.03440 * 326.14833 * 14 13 11 16 16 C 1.38157 * 120.06758 * 179.76571 * 15 14 13 17 17 C 1.38168 * 120.13516 * 0.51793 * 16 15 14 18 18 C 1.38901 * 120.07472 * 359.73902 * 17 16 15 19 19 O 1.35752 * 120.03971 * 179.97438 * 18 17 16 20 20 C 1.34826 * 117.00491 * 185.92614 * 19 18 17 21 21 H 1.08006 * 119.99805 * 5.40428 * 20 19 18 22 22 C 1.38652 * 120.00017 * 185.40419 * 20 19 18 23 23 N 1.31557 * 119.99901 * 179.97438 * 22 20 19 24 24 Si 1.86802 * 119.99997 * 359.97438 * 22 20 19 25 25 H 1.48499 * 109.46758 * 90.00154 * 24 22 20 26 26 H 1.48500 * 109.47042 * 209.99996 * 24 22 20 27 27 H 1.48496 * 109.47167 * 329.99923 * 24 22 20 28 28 C 1.38711 * 120.03597 * 146.43006 * 14 13 11 29 29 H 1.09003 * 109.47188 * 299.99697 * 1 2 3 30 30 H 1.08996 * 109.47555 * 60.00173 * 1 2 3 31 31 H 1.09006 * 109.46679 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47326 * 240.00184 * 2 1 3 33 33 H 1.09002 * 109.47405 * 119.99416 * 2 1 3 34 34 H 1.09003 * 109.47029 * 60.00206 * 3 2 1 35 35 H 1.08996 * 109.46951 * 300.00197 * 3 2 1 36 36 H 1.09003 * 109.46765 * 60.00387 * 4 3 2 37 37 H 1.08996 * 109.47202 * 300.00285 * 4 3 2 38 38 H 0.97000 * 120.00000 * 239.99052 * 7 5 4 39 39 H 0.96988 * 119.99738 * 359.97438 * 9 8 7 40 40 H 0.97007 * 119.99547 * 179.97438 * 9 8 7 41 41 H 0.97003 * 119.99596 * 354.78592 * 13 11 5 42 42 H 1.08005 * 119.96706 * 0.02562 * 15 14 13 43 43 H 1.07997 * 119.93224 * 180.23028 * 16 15 14 44 44 H 1.08002 * 119.96161 * 179.76493 * 17 16 15 45 45 H 0.97001 * 119.99802 * 179.97438 * 23 22 20 46 46 H 1.07997 * 120.07224 * 359.95212 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4427 0.0006 5 6 4.0798 2.8852 0.0000 6 1 3.6455 3.4238 -0.8422 7 7 3.6917 3.5408 1.2514 8 6 4.1113 3.0427 2.4313 9 7 3.7497 3.6427 3.5829 10 8 4.8160 2.0522 2.4571 11 6 5.5818 2.8870 -0.1232 12 8 6.2710 3.0405 0.8629 13 7 6.1591 2.7181 -1.3292 14 6 7.5477 2.8282 -1.4618 15 6 8.2525 3.7287 -0.6723 16 6 9.6242 3.8346 -0.7991 17 6 10.2981 3.0536 -1.7183 18 6 9.5987 2.1554 -2.5142 19 8 10.2615 1.3888 -3.4175 20 6 9.5128 0.6288 -4.2419 21 1 8.4362 0.7131 -4.2251 22 6 10.1250 -0.2611 -5.1113 23 7 9.3944 -1.0030 -5.9154 24 14 11.9871 -0.4064 -5.1409 25 1 12.4180 -1.4442 -4.1701 26 1 12.4321 -0.7894 -6.5050 27 1 12.5914 0.8987 -4.7714 28 6 8.2215 2.0428 -2.3855 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8934 -0.5137 0.8900 34 1 1.6765 1.9564 0.8900 35 1 1.6765 1.9564 -0.8899 36 1 3.9336 0.9288 -0.8892 37 1 3.9329 0.9290 0.8908 38 1 3.1296 4.3310 1.2308 39 1 3.1878 4.4330 3.5623 40 1 4.0514 3.2839 4.4322 41 1 5.6120 2.5201 -2.1054 42 1 7.7280 4.3435 0.0443 43 1 10.1702 4.5325 -0.1818 44 1 11.3699 3.1413 -1.8178 45 1 9.8227 -1.6253 -6.5239 46 1 7.6756 1.3449 -3.0029 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000147832453.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:58 Heat of formation + Delta-G solvation = -71.980330 kcal Electronic energy + Delta-G solvation = -28903.810042 eV Core-core repulsion = 24794.235007 eV Total energy + Delta-G solvation = -4109.575035 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.80909 -39.51993 -38.54426 -36.71099 -36.18236 -34.33093 -34.17440 -33.61221 -32.32785 -30.75497 -29.45231 -28.84098 -26.82715 -25.17204 -23.24759 -22.47007 -21.73400 -21.43595 -20.72049 -19.69371 -18.73896 -18.10688 -17.75629 -17.31333 -16.67969 -15.94600 -15.60122 -15.30822 -15.02725 -14.78231 -14.61845 -14.40866 -14.16374 -14.07789 -13.78506 -13.64940 -13.45785 -13.14487 -12.99899 -12.84105 -12.30561 -12.15480 -12.02957 -11.57740 -11.46878 -11.34890 -11.18987 -11.04198 -10.89179 -10.79612 -10.74423 -10.27733 -10.12946 -9.85251 -9.68402 -9.63091 -9.49390 -8.91051 -8.81057 -7.74603 -7.24803 -6.40265 -4.07032 1.94852 2.31405 2.62826 2.90380 3.18905 3.24243 3.28681 3.42901 3.48410 4.26056 4.31552 4.46535 4.58810 4.67368 4.71572 4.81411 4.90428 4.95415 5.08969 5.11527 5.20456 5.48933 5.51371 5.64190 5.66653 5.68909 5.86085 5.95311 5.98960 6.01723 6.06011 6.18440 6.21823 6.24904 6.30562 6.51906 6.54490 6.83097 6.94108 6.98816 7.23317 7.24280 7.60469 7.76825 7.80386 7.85190 8.05001 8.40310 8.67997 8.95633 9.58528 10.67538 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012612 B = 0.002903 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.603949 B = 9641.999818 C =11408.717389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C -0.110 4.110 4 C -0.139 4.139 5 C 0.158 3.842 6 H 0.110 0.890 7 N -0.732 5.732 8 C 0.709 3.291 9 N -0.872 5.872 10 O -0.560 6.560 11 C 0.495 3.505 12 O -0.484 6.484 13 N -0.672 5.672 14 C 0.186 3.814 15 C -0.198 4.198 16 C -0.064 4.064 17 C -0.202 4.202 18 C 0.174 3.826 19 O -0.217 6.217 20 C -0.388 4.388 21 H 0.105 0.895 22 C 0.063 3.937 23 N -0.881 5.881 24 Si 0.905 3.095 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.259 1.259 28 C -0.244 4.244 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.077 0.923 37 H 0.097 0.903 38 H 0.398 0.602 39 H 0.392 0.608 40 H 0.413 0.587 41 H 0.406 0.594 42 H 0.117 0.883 43 H 0.116 0.884 44 H 0.117 0.883 45 H 0.279 0.721 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.478 10.472 12.720 24.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C -0.148 4.148 4 C -0.178 4.178 5 C 0.047 3.953 6 H 0.128 0.872 7 N -0.389 5.389 8 C 0.408 3.592 9 N -0.440 5.440 10 O -0.434 6.434 11 C 0.279 3.721 12 O -0.355 6.355 13 N -0.319 5.319 14 C 0.092 3.908 15 C -0.219 4.219 16 C -0.083 4.083 17 C -0.222 4.222 18 C 0.122 3.878 19 O -0.122 6.122 20 C -0.464 4.464 21 H 0.122 0.878 22 C -0.140 4.140 23 N -0.519 5.519 24 Si 0.730 3.270 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.183 1.183 28 C -0.266 4.266 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.096 0.904 37 H 0.116 0.884 38 H 0.232 0.768 39 H 0.219 0.781 40 H 0.245 0.755 41 H 0.241 0.759 42 H 0.135 0.865 43 H 0.134 0.866 44 H 0.136 0.864 45 H 0.089 0.911 46 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -17.175 9.518 13.100 23.604 hybrid contribution -0.099 0.279 -0.259 0.393 sum -17.274 9.796 12.841 23.648 Atomic orbital electron populations 1.21763 0.95980 1.01558 1.01530 1.21528 0.95635 0.96837 1.02440 1.21536 0.94401 0.97078 1.01780 1.22062 0.96098 0.94280 1.05318 1.20680 0.91624 0.96267 0.86693 0.87175 1.44665 1.56837 1.33298 1.04139 1.15854 0.79644 0.83233 0.80513 1.42970 1.58895 1.34433 1.07748 1.91004 1.39777 1.26836 1.85749 1.20951 0.90731 0.77365 0.83037 1.90778 1.63969 1.44830 1.35887 1.43505 1.06436 1.71275 1.10643 1.17394 0.81733 0.94817 0.96823 1.20555 0.94311 1.02603 1.04392 1.20510 0.93532 0.97744 0.96539 1.20222 0.99727 1.01018 1.01233 1.18808 0.89992 0.90420 0.88603 1.83613 1.35701 1.51315 1.41532 1.20720 0.92465 1.18468 1.14754 0.87812 1.24453 1.00233 0.94322 0.94959 1.69644 1.36283 1.23474 1.22528 0.86186 0.83714 0.79720 0.77334 1.19910 1.20827 1.18294 1.20938 0.94699 1.04989 1.05961 0.93016 0.92783 0.92834 0.91720 0.91970 0.92065 0.92029 0.90427 0.88445 0.76811 0.78125 0.75516 0.75945 0.86461 0.86573 0.86444 0.91107 0.84638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.91 37.16 0.37 -0.70 16 2 C -0.13 -1.06 5.93 -26.73 -0.16 -1.22 16 3 C -0.11 -0.87 5.10 -26.72 -0.14 -1.01 16 4 C -0.14 -1.46 4.54 -26.73 -0.12 -1.58 16 5 C 0.16 1.60 3.01 -69.08 -0.21 1.39 16 6 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 7 N -0.73 -6.56 4.65 -59.81 -0.28 -6.83 16 8 C 0.71 8.56 7.60 -86.91 -0.66 7.90 16 9 N -0.87 -6.60 8.88 27.64 0.25 -6.35 16 10 O -0.56 -9.84 13.04 -18.16 -0.24 -10.08 16 11 C 0.49 7.53 6.55 -10.99 -0.07 7.46 16 12 O -0.48 -9.44 11.41 -17.90 -0.20 -9.64 16 13 N -0.67 -10.30 5.34 -9.88 -0.05 -10.36 16 14 C 0.19 3.60 6.27 -83.72 -0.52 3.08 16 15 C -0.20 -3.82 8.65 -39.34 -0.34 -4.16 16 16 C -0.06 -1.20 10.03 -39.64 -0.40 -1.60 16 17 C -0.20 -4.20 9.99 -39.36 -0.39 -4.59 16 18 C 0.17 4.12 6.64 -39.13 -0.26 3.86 16 19 O -0.22 -5.77 8.58 0.05 0.00 -5.77 16 20 C -0.39 -10.94 9.90 30.89 0.31 -10.64 16 21 H 0.10 2.96 5.53 -52.48 -0.29 2.67 16 22 C 0.06 1.78 5.49 -17.52 -0.10 1.68 16 23 N -0.88 -25.38 13.96 55.48 0.77 -24.61 16 24 Si 0.90 21.86 28.62 -169.99 -4.86 17.00 16 25 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 27 H -0.26 -6.27 7.11 56.52 0.40 -5.87 16 28 C -0.24 -5.36 9.04 -39.21 -0.35 -5.71 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.48 7.75 -51.93 -0.40 0.07 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.10 1.38 6.03 -51.93 -0.31 1.07 16 38 H 0.40 2.03 8.84 -40.82 -0.36 1.67 16 39 H 0.39 1.53 8.84 -40.82 -0.36 1.16 16 40 H 0.41 2.97 8.93 -40.82 -0.36 2.61 16 41 H 0.41 4.89 8.82 -40.82 -0.36 4.53 16 42 H 0.12 2.23 6.45 -52.48 -0.34 1.89 16 43 H 0.12 1.80 8.06 -52.49 -0.42 1.37 16 44 H 0.12 2.25 8.06 -52.49 -0.42 1.83 16 45 H 0.28 7.44 8.31 -40.82 -0.34 7.10 16 46 H 0.14 3.04 5.71 -52.49 -0.30 2.74 16 LS Contribution 380.94 15.07 5.74 5.74 Total: -1.00 -37.09 380.94 -8.38 -45.47 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -6.45 Total: 11.26 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: -3.05 Total: -5.83 kcal Atomic # 7 Polarization: -48.84 SS G_CDS: 0.69 Total: -48.15 kcal Atomic # 8 Polarization: -25.06 SS G_CDS: -0.44 Total: -25.50 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.86 Total: 17.00 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -37.09 -8.38 -45.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000147832453.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.510 kcal (2) G-P(sol) polarization free energy of solvation -37.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds