Wall clock time and date at job start Tue Mar 31 2020 18:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.46747 * 2 1 4 4 C 1.53005 * 109.47033 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.46839 * 179.97438 * 4 3 2 6 6 H 1.08996 * 109.47492 * 305.00411 * 5 4 3 7 7 N 1.46502 * 109.46768 * 65.00545 * 5 4 3 8 8 C 1.34778 * 119.99870 * 59.72286 * 7 5 4 9 9 N 1.34786 * 119.99779 * 180.27569 * 8 7 5 10 10 O 1.21589 * 120.00248 * 0.27434 * 8 7 5 11 11 C 1.50700 * 109.46683 * 185.00007 * 5 4 3 12 12 O 1.21287 * 120.00468 * 260.00219 * 11 5 4 13 13 N 1.34776 * 119.99898 * 80.00971 * 11 5 4 14 14 C 1.39923 * 120.00250 * 174.78965 * 13 11 5 15 15 C 1.38963 * 120.03440 * 326.14833 * 14 13 11 16 16 C 1.38157 * 120.06758 * 179.76571 * 15 14 13 17 17 C 1.38168 * 120.13516 * 0.51793 * 16 15 14 18 18 C 1.38901 * 120.07472 * 359.73902 * 17 16 15 19 19 O 1.35752 * 120.03971 * 179.97438 * 18 17 16 20 20 C 1.34826 * 117.00491 * 185.92614 * 19 18 17 21 21 H 1.08006 * 119.99805 * 5.40428 * 20 19 18 22 22 C 1.38652 * 120.00017 * 185.40419 * 20 19 18 23 23 N 1.31557 * 119.99901 * 179.97438 * 22 20 19 24 24 Si 1.86802 * 119.99997 * 359.97438 * 22 20 19 25 25 H 1.48499 * 109.46758 * 90.00154 * 24 22 20 26 26 H 1.48500 * 109.47042 * 209.99996 * 24 22 20 27 27 H 1.48496 * 109.47167 * 329.99923 * 24 22 20 28 28 C 1.38711 * 120.03597 * 146.43006 * 14 13 11 29 29 H 1.09003 * 109.47188 * 299.99697 * 1 2 3 30 30 H 1.08996 * 109.47555 * 60.00173 * 1 2 3 31 31 H 1.09006 * 109.46679 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47326 * 240.00184 * 2 1 3 33 33 H 1.09002 * 109.47405 * 119.99416 * 2 1 3 34 34 H 1.09003 * 109.47029 * 60.00206 * 3 2 1 35 35 H 1.08996 * 109.46951 * 300.00197 * 3 2 1 36 36 H 1.09003 * 109.46765 * 60.00387 * 4 3 2 37 37 H 1.08996 * 109.47202 * 300.00285 * 4 3 2 38 38 H 0.97000 * 120.00000 * 239.99052 * 7 5 4 39 39 H 0.96988 * 119.99738 * 359.97438 * 9 8 7 40 40 H 0.97007 * 119.99547 * 179.97438 * 9 8 7 41 41 H 0.97003 * 119.99596 * 354.78592 * 13 11 5 42 42 H 1.08005 * 119.96706 * 0.02562 * 15 14 13 43 43 H 1.07997 * 119.93224 * 180.23028 * 16 15 14 44 44 H 1.08002 * 119.96161 * 179.76493 * 17 16 15 45 45 H 0.97001 * 119.99802 * 179.97438 * 23 22 20 46 46 H 1.07997 * 120.07224 * 359.95212 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4427 0.0006 5 6 4.0798 2.8852 0.0000 6 1 3.6455 3.4238 -0.8422 7 7 3.6917 3.5408 1.2514 8 6 4.1113 3.0427 2.4313 9 7 3.7497 3.6427 3.5829 10 8 4.8160 2.0522 2.4571 11 6 5.5818 2.8870 -0.1232 12 8 6.2710 3.0405 0.8629 13 7 6.1591 2.7181 -1.3292 14 6 7.5477 2.8282 -1.4618 15 6 8.2525 3.7287 -0.6723 16 6 9.6242 3.8346 -0.7991 17 6 10.2981 3.0536 -1.7183 18 6 9.5987 2.1554 -2.5142 19 8 10.2615 1.3888 -3.4175 20 6 9.5128 0.6288 -4.2419 21 1 8.4362 0.7131 -4.2251 22 6 10.1250 -0.2611 -5.1113 23 7 9.3944 -1.0030 -5.9154 24 14 11.9871 -0.4064 -5.1409 25 1 12.4180 -1.4442 -4.1701 26 1 12.4321 -0.7894 -6.5050 27 1 12.5914 0.8987 -4.7714 28 6 8.2215 2.0428 -2.3855 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8934 -0.5137 0.8900 34 1 1.6765 1.9564 0.8900 35 1 1.6765 1.9564 -0.8899 36 1 3.9336 0.9288 -0.8892 37 1 3.9329 0.9290 0.8908 38 1 3.1296 4.3310 1.2308 39 1 3.1878 4.4330 3.5623 40 1 4.0514 3.2839 4.4322 41 1 5.6120 2.5201 -2.1054 42 1 7.7280 4.3435 0.0443 43 1 10.1702 4.5325 -0.1818 44 1 11.3699 3.1413 -1.8178 45 1 9.8227 -1.6253 -6.5239 46 1 7.6756 1.3449 -3.0029 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000147832453.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:57 Heat of formation + Delta-G solvation = -100.181266 kcal Electronic energy + Delta-G solvation = -28905.032927 eV Core-core repulsion = 24794.235007 eV Total energy + Delta-G solvation = -4110.797920 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.94417 -40.94194 -39.99326 -38.20235 -37.16015 -35.61639 -35.19693 -34.43648 -34.37092 -31.63432 -30.99099 -30.38082 -27.79962 -27.11406 -24.24702 -23.54808 -23.39862 -22.41300 -21.69599 -20.93109 -19.89562 -19.58646 -19.35483 -18.40860 -17.77504 -17.15680 -16.93851 -16.67760 -16.29757 -16.08909 -15.80837 -15.65492 -15.50215 -15.40807 -15.17464 -14.95076 -14.69708 -14.28285 -14.22675 -14.11328 -13.85754 -13.52829 -13.28661 -12.87964 -12.76789 -12.67570 -12.49057 -12.21510 -12.08683 -12.00388 -11.77990 -11.51541 -11.47003 -11.29072 -11.19721 -10.87129 -10.79205 -10.45246 -9.91271 -9.39713 -8.92024 -8.49613 -6.21922 0.38255 0.63810 1.32352 1.36332 1.52777 1.60674 1.78668 2.18733 2.29004 2.47934 2.77839 3.07906 3.11710 3.57362 3.67644 3.84847 3.98553 4.10200 4.15520 4.23744 4.29913 4.40268 4.41451 4.52947 4.59999 4.72422 4.81675 4.86565 4.89762 4.99947 5.02593 5.22647 5.31561 5.33884 5.35927 5.40234 5.48848 5.50321 5.53383 5.61731 5.74869 5.90049 5.98212 6.11960 6.21099 6.48799 6.85011 7.18405 7.21465 7.58169 7.85879 8.61642 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012612 B = 0.002903 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.603949 B = 9641.999818 C =11408.717389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.131 4.131 3 C -0.100 4.100 4 C -0.135 4.135 5 C 0.166 3.834 6 H 0.161 0.839 7 N -0.716 5.716 8 C 0.700 3.300 9 N -0.853 5.853 10 O -0.620 6.620 11 C 0.490 3.510 12 O -0.527 6.527 13 N -0.666 5.666 14 C 0.188 3.812 15 C -0.193 4.193 16 C -0.054 4.054 17 C -0.205 4.205 18 C 0.141 3.859 19 O -0.240 6.240 20 C -0.398 4.398 21 H 0.084 0.916 22 C 0.013 3.987 23 N -0.920 5.920 24 Si 0.966 3.034 25 H -0.270 1.270 26 H -0.266 1.266 27 H -0.261 1.261 28 C -0.256 4.256 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.051 0.949 32 H 0.058 0.942 33 H 0.042 0.958 34 H 0.066 0.934 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.057 0.943 38 H 0.421 0.579 39 H 0.412 0.588 40 H 0.416 0.584 41 H 0.421 0.579 42 H 0.127 0.873 43 H 0.157 0.843 44 H 0.133 0.867 45 H 0.284 0.716 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.717 12.912 13.623 27.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.168 4.168 3 C -0.137 4.137 4 C -0.174 4.174 5 C 0.055 3.945 6 H 0.179 0.821 7 N -0.375 5.375 8 C 0.398 3.602 9 N -0.423 5.423 10 O -0.499 6.499 11 C 0.277 3.723 12 O -0.400 6.400 13 N -0.313 5.313 14 C 0.093 3.907 15 C -0.214 4.214 16 C -0.072 4.072 17 C -0.225 4.225 18 C 0.091 3.909 19 O -0.147 6.147 20 C -0.474 4.474 21 H 0.101 0.899 22 C -0.186 4.186 23 N -0.561 5.561 24 Si 0.789 3.211 25 H -0.195 1.195 26 H -0.191 1.191 27 H -0.185 1.185 28 C -0.278 4.278 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.085 0.915 35 H 0.107 0.893 36 H 0.092 0.908 37 H 0.076 0.924 38 H 0.259 0.741 39 H 0.243 0.757 40 H 0.248 0.752 41 H 0.259 0.741 42 H 0.145 0.855 43 H 0.175 0.825 44 H 0.151 0.849 45 H 0.094 0.906 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -18.512 12.042 14.023 26.159 hybrid contribution 0.131 -0.324 -0.307 0.466 sum -18.380 11.717 13.715 25.754 Atomic orbital electron populations 1.21732 0.94606 1.01809 1.02321 1.21546 0.96834 0.97162 1.01279 1.21477 0.92024 0.96914 1.03289 1.21988 0.98077 0.94068 1.03241 1.20786 0.87882 0.96990 0.88796 0.82133 1.44478 1.56390 1.33723 1.02885 1.16209 0.79257 0.82774 0.81924 1.42772 1.58270 1.34582 1.06649 1.90979 1.42581 1.29574 1.86741 1.21975 0.92838 0.75604 0.81879 1.90756 1.65441 1.46685 1.37138 1.43564 1.04983 1.70905 1.11835 1.17491 0.83787 0.93838 0.95614 1.20855 0.94885 1.01930 1.03682 1.20959 0.93441 0.97213 0.95624 1.20514 1.00678 1.00364 1.00898 1.19353 0.91047 0.91220 0.89322 1.83557 1.35816 1.52583 1.42785 1.20698 0.91971 1.19088 1.15687 0.89859 1.25227 1.04647 0.94063 0.94657 1.69717 1.38031 1.24651 1.23672 0.85276 0.78348 0.79418 0.78073 1.19550 1.19056 1.18519 1.20920 0.94505 1.05571 1.06804 0.92464 0.91667 0.92968 0.92299 0.93878 0.91496 0.89335 0.90751 0.92431 0.74111 0.75722 0.75225 0.74119 0.85544 0.82530 0.84867 0.90587 0.86196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.91 71.98 0.71 -1.10 16 2 C -0.13 -2.08 5.93 30.60 0.18 -1.90 16 3 C -0.10 -1.34 5.10 30.60 0.16 -1.19 16 4 C -0.13 -2.70 4.54 30.60 0.14 -2.56 16 5 C 0.17 2.96 3.01 44.24 0.13 3.09 16 6 H 0.16 1.30 8.14 -2.39 -0.02 1.28 16 7 N -0.72 -10.92 4.65 -461.40 -2.15 -13.07 16 8 C 0.70 16.04 7.60 179.05 1.36 17.40 16 9 N -0.85 -11.33 8.88 -184.73 -1.64 -12.97 16 10 O -0.62 -22.12 13.04 18.43 0.24 -21.88 16 11 C 0.49 14.32 6.55 87.66 0.57 14.89 16 12 O -0.53 -20.22 11.41 19.37 0.22 -19.99 16 13 N -0.67 -19.81 5.34 -303.56 -1.62 -21.43 16 14 C 0.19 7.21 6.27 38.14 0.24 7.45 16 15 C -0.19 -7.12 8.65 22.42 0.19 -6.93 16 16 C -0.05 -1.89 10.03 22.23 0.22 -1.66 16 17 C -0.20 -8.29 9.99 22.41 0.22 -8.07 16 18 C 0.14 6.77 6.64 22.56 0.15 6.92 16 19 O -0.24 -13.18 8.58 -22.73 -0.20 -13.37 16 20 C -0.40 -23.38 9.90 67.92 0.67 -22.71 16 21 H 0.08 5.06 5.53 -2.91 -0.02 5.04 16 22 C 0.01 0.74 5.49 84.83 0.47 1.20 16 23 N -0.92 -54.56 13.96 21.61 0.30 -54.26 16 24 Si 0.97 45.70 28.62 68.60 1.96 47.66 16 25 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 26 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 27 H -0.26 -12.29 7.11 99.48 0.71 -11.58 16 28 C -0.26 -11.56 9.04 22.51 0.20 -11.36 16 29 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 32 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.07 0.85 7.75 -2.39 -0.02 0.83 16 35 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.06 1.68 6.03 -2.39 -0.01 1.66 16 38 H 0.42 2.60 8.84 -92.71 -0.82 1.78 16 39 H 0.41 2.02 8.84 -92.72 -0.82 1.20 16 40 H 0.42 5.45 8.93 -92.70 -0.83 4.62 16 41 H 0.42 9.71 8.82 -92.71 -0.82 8.89 16 42 H 0.13 4.52 6.45 -2.91 -0.02 4.51 16 43 H 0.16 4.20 8.06 -2.91 -0.02 4.18 16 44 H 0.13 4.90 8.06 -2.91 -0.02 4.87 16 45 H 0.28 15.50 8.31 -92.71 -0.77 14.73 16 46 H 0.12 5.72 5.71 -2.91 -0.02 5.70 16 Total: -1.00 -85.51 380.94 0.53 -84.98 By element: Atomic # 1 Polarization: 33.08 SS G_CDS: -2.22 Total: 30.86 kcal Atomic # 6 Polarization: -12.15 SS G_CDS: 5.63 Total: -6.52 kcal Atomic # 7 Polarization: -96.63 SS G_CDS: -5.11 Total: -101.73 kcal Atomic # 8 Polarization: -55.51 SS G_CDS: 0.27 Total: -55.25 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 1.96 Total: 47.66 kcal Total: -85.51 0.53 -84.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000147832453.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.204 kcal (2) G-P(sol) polarization free energy of solvation -85.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds