Wall clock time and date at job start Tue Mar 31 2020 18:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47533 * 2 1 4 4 H 1.08997 * 109.46824 * 305.55089 * 3 2 1 5 5 C 1.50696 * 109.47514 * 185.54982 * 3 2 1 6 6 H 1.07998 * 120.00251 * 244.46642 * 5 3 2 7 7 C 1.37876 * 119.99741 * 64.46024 * 5 3 2 8 8 N 1.31514 * 119.99920 * 196.38067 * 7 5 3 9 9 Si 1.86800 * 120.00224 * 16.38267 * 7 5 3 10 10 H 1.48504 * 109.47272 * 179.97438 * 9 7 5 11 11 H 1.48503 * 109.47028 * 299.99713 * 9 7 5 12 12 H 1.48496 * 109.46885 * 59.99808 * 9 7 5 13 13 N 1.46496 * 109.47169 * 65.54752 * 3 2 1 14 14 C 1.34780 * 120.00415 * 275.00217 * 13 3 2 15 15 O 1.21597 * 119.99859 * 0.02562 * 14 13 3 16 16 N 1.34771 * 120.00556 * 179.97438 * 14 13 3 17 17 C 1.40139 * 120.00552 * 185.11419 * 16 14 13 18 18 C 1.38861 * 119.98309 * 320.80482 * 17 16 14 19 19 C 1.38197 * 120.10225 * 179.97438 * 18 17 16 20 20 C 1.38533 * 120.08688 * 0.04134 * 19 18 17 21 21 O 1.36055 * 120.01225 * 179.97438 * 20 19 18 22 22 C 1.42901 * 116.99824 * 0.02562 * 21 20 19 23 23 C 1.39285 * 119.97524 * 359.97438 * 20 19 18 24 24 N 1.40118 * 120.05656 * 180.02562 * 23 20 19 25 25 C 1.34769 * 120.00056 * 200.55603 * 24 23 20 26 26 C 1.50700 * 119.99878 * 185.26626 * 25 24 23 27 27 O 1.21290 * 120.00212 * 5.26210 * 25 24 23 28 28 C 1.38676 * 119.88925 * 359.70555 * 23 20 19 29 29 H 1.09000 * 109.47452 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47504 * 300.00565 * 1 2 3 31 31 H 1.09007 * 109.46730 * 59.99889 * 1 2 3 32 32 H 1.08999 * 109.47203 * 239.98987 * 2 1 3 33 33 H 1.09001 * 109.46339 * 119.99874 * 2 1 3 34 34 H 0.96996 * 120.00241 * 354.94491 * 8 7 5 35 35 H 0.97002 * 120.00508 * 95.00367 * 13 3 2 36 36 H 0.97005 * 119.99923 * 5.11613 * 16 14 13 37 37 H 1.07997 * 119.95059 * 359.97438 * 18 17 16 38 38 H 1.08000 * 119.95418 * 180.02562 * 19 18 17 39 39 H 1.09000 * 109.47024 * 59.99805 * 22 21 20 40 40 H 1.09005 * 109.46834 * 179.97438 * 22 21 20 41 41 H 1.08994 * 109.47249 * 299.99666 * 22 21 20 42 42 H 0.97007 * 119.99360 * 20.55070 * 24 23 20 43 43 H 1.08999 * 109.47557 * 359.97438 * 26 25 24 44 44 H 1.09000 * 109.47274 * 119.99848 * 26 25 24 45 45 H 1.09003 * 109.47224 * 239.99549 * 26 25 24 46 46 H 1.08001 * 120.04064 * 180.31915 * 28 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5979 1.9841 -0.8361 5 6 3.5408 1.4446 -0.1374 6 1 4.1561 1.8211 0.6663 7 6 4.1282 0.9658 -1.2892 8 7 5.4083 0.6643 -1.2981 9 14 3.1060 0.7455 -2.8371 10 1 3.9665 0.2217 -3.9282 11 1 2.0047 -0.2142 -2.5705 12 1 2.5345 2.0545 -3.2433 13 7 1.6639 2.0934 1.2573 14 6 0.4477 2.6600 1.3853 15 8 -0.3375 2.6305 0.4573 16 7 0.1014 3.2585 2.5421 17 6 -1.1986 3.7528 2.7137 18 6 -1.8471 4.3808 1.6585 19 6 -3.1294 4.8688 1.8248 20 6 -3.7711 4.7334 3.0450 21 8 -5.0333 5.2148 3.2072 22 6 -5.6364 5.8477 2.0769 23 6 -3.1237 4.1044 4.1058 24 7 -3.7714 3.9661 5.3406 25 6 -3.0509 3.7524 6.4593 26 6 -3.7509 3.4856 7.7669 27 8 -1.8391 3.7747 6.4137 28 6 -1.8396 3.6092 3.9359 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5140 -0.8899 33 1 1.8932 -0.5138 0.8900 34 1 5.9551 0.8471 -0.5181 35 1 2.2901 2.1168 1.9978 36 1 0.7521 3.3471 3.2561 37 1 -1.3487 4.4881 0.7065 38 1 -3.6316 5.3564 1.0024 39 1 -5.6975 5.1373 1.2524 40 1 -6.6389 6.1844 2.3410 41 1 -5.0331 6.7037 1.7749 42 1 -4.7385 4.0243 5.3901 43 1 -4.8297 3.5048 7.6121 44 1 -3.4551 2.5067 8.1443 45 1 -3.4743 4.2526 8.4903 46 1 -1.3373 3.1165 4.7552 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157026561.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:15 Heat of formation + Delta-G solvation = -66.473284 kcal Electronic energy + Delta-G solvation = -29108.514578 eV Core-core repulsion = 24999.178346 eV Total energy + Delta-G solvation = -4109.336232 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.05734 -39.89285 -39.35506 -37.44536 -35.64471 -34.85485 -33.75509 -32.37902 -31.31710 -31.18405 -29.20515 -28.79357 -27.37127 -26.64535 -23.28833 -22.74981 -22.13898 -21.00152 -20.49420 -19.65471 -18.66837 -18.42855 -17.77519 -17.20459 -16.97418 -16.15074 -16.01241 -15.68967 -15.42739 -15.15490 -14.72877 -14.42068 -14.00152 -13.79984 -13.64465 -13.35757 -13.21775 -13.01556 -12.80227 -12.64283 -12.51257 -12.46227 -12.25957 -12.12962 -11.77359 -11.50857 -11.25130 -10.90038 -10.80089 -10.65265 -10.41324 -9.97500 -9.89174 -9.74063 -9.41695 -9.35020 -9.02752 -8.39136 -8.32441 -8.08290 -7.47662 -6.57052 -4.20491 1.23529 1.34972 2.37706 2.76179 3.03308 3.22943 3.39980 3.45969 3.59925 3.61577 3.95276 4.41558 4.42996 4.73016 4.75581 4.84477 4.86757 4.94104 5.01374 5.14423 5.18150 5.24127 5.34959 5.41586 5.51141 5.65943 5.72837 6.13162 6.14383 6.15562 6.30547 6.35792 6.45409 6.57977 6.72174 6.83565 6.96377 6.98054 7.08693 7.15817 7.24229 7.30456 7.44845 7.54033 7.81298 7.85164 8.25583 8.66118 8.76041 9.17234 9.48830 10.83887 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017032 B = 0.002780 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.550190 B =10067.873377 C =11077.027836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.142 4.142 3 C 0.265 3.735 4 H 0.042 0.958 5 C -0.616 4.616 6 H 0.061 0.939 7 C 0.039 3.961 8 N -0.899 5.899 9 Si 1.041 2.959 10 H -0.284 1.284 11 H -0.267 1.267 12 H -0.280 1.280 13 N -0.713 5.713 14 C 0.695 3.305 15 O -0.581 6.581 16 N -0.695 5.695 17 C 0.166 3.834 18 C -0.093 4.093 19 C -0.168 4.168 20 C 0.072 3.928 21 O -0.325 6.325 22 C 0.031 3.969 23 C 0.133 3.867 24 N -0.658 5.658 25 C 0.507 3.493 26 C -0.169 4.169 27 O -0.528 6.528 28 C -0.133 4.133 29 H 0.028 0.972 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.070 0.930 33 H 0.050 0.950 34 H 0.269 0.731 35 H 0.390 0.610 36 H 0.404 0.596 37 H 0.144 0.856 38 H 0.133 0.867 39 H 0.056 0.944 40 H 0.097 0.903 41 H 0.055 0.945 42 H 0.415 0.585 43 H 0.077 0.923 44 H 0.099 0.901 45 H 0.097 0.903 46 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.979 8.543 14.322 28.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.180 4.180 3 C 0.161 3.839 4 H 0.060 0.940 5 C -0.654 4.654 6 H 0.079 0.921 7 C -0.168 4.168 8 N -0.532 5.532 9 Si 0.868 3.132 10 H -0.210 1.210 11 H -0.194 1.194 12 H -0.206 1.206 13 N -0.364 5.364 14 C 0.396 3.604 15 O -0.459 6.459 16 N -0.344 5.344 17 C 0.069 3.931 18 C -0.114 4.114 19 C -0.188 4.188 20 C 0.025 3.975 21 O -0.240 6.240 22 C -0.064 4.064 23 C 0.037 3.963 24 N -0.303 5.303 25 C 0.296 3.704 26 C -0.228 4.228 27 O -0.404 6.404 28 C -0.156 4.156 29 H 0.047 0.953 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.223 0.777 36 H 0.239 0.761 37 H 0.161 0.839 38 H 0.151 0.849 39 H 0.074 0.926 40 H 0.115 0.885 41 H 0.073 0.927 42 H 0.251 0.749 43 H 0.096 0.904 44 H 0.117 0.883 45 H 0.116 0.884 46 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -22.793 7.871 12.047 26.956 hybrid contribution 0.105 0.744 2.086 2.218 sum -22.688 8.615 14.134 28.084 Atomic orbital electron populations 1.21855 0.97289 0.98666 1.02039 1.22407 0.93923 0.99879 1.01834 1.18955 0.95526 0.88245 0.81196 0.94035 1.22105 0.89727 1.48571 1.05033 0.92065 1.25680 0.97527 0.92415 1.01139 1.70876 1.07111 1.40848 1.34370 0.84130 0.75493 0.77734 0.75812 1.21004 1.19357 1.20605 1.45530 1.13352 1.58600 1.18872 1.16091 0.83516 0.78560 0.82277 1.90876 1.51342 1.65037 1.38690 1.42732 1.11417 1.61973 1.18233 1.17221 0.85531 0.96553 0.93760 1.21151 0.94535 0.95829 0.99876 1.20911 0.96499 1.05371 0.95974 1.18520 0.85547 0.99370 0.94045 1.85926 1.26517 1.72874 1.38659 1.23004 0.98039 0.96919 0.88464 1.16691 0.93303 1.02040 0.84230 1.43454 1.10959 1.70635 1.05215 1.20987 0.87922 0.75929 0.85595 1.21851 1.01335 1.05215 0.94431 1.90667 1.14223 1.49679 1.85837 1.21150 0.93525 1.02107 0.98770 0.95303 0.93233 0.93049 0.91213 0.93148 0.92123 0.77702 0.76097 0.83854 0.84944 0.92571 0.88489 0.92655 0.74911 0.90360 0.88277 0.88399 0.82279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 8.53 37.16 0.32 -2.64 16 2 C -0.14 -3.22 5.26 -26.73 -0.14 -3.36 16 3 C 0.26 6.34 1.82 -69.09 -0.13 6.21 16 4 H 0.04 1.08 6.32 -51.93 -0.33 0.75 16 5 C -0.62 -16.68 9.02 -34.44 -0.31 -16.99 16 6 H 0.06 1.73 7.96 -52.49 -0.42 1.32 16 7 C 0.04 1.09 5.31 -17.82 -0.09 1.00 16 8 N -0.90 -26.84 13.70 55.43 0.76 -26.08 16 9 Si 1.04 25.12 26.27 -169.99 -4.47 20.65 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 11 H -0.27 -6.03 5.59 56.52 0.32 -5.71 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 N -0.71 -14.56 5.03 -59.82 -0.30 -14.86 16 14 C 0.69 13.62 6.99 -86.92 -0.61 13.01 16 15 O -0.58 -12.83 11.17 5.28 0.06 -12.77 16 16 N -0.69 -11.12 5.34 -14.20 -0.08 -11.19 16 17 C 0.17 2.60 6.23 -83.64 -0.52 2.08 16 18 C -0.09 -1.43 8.67 -39.37 -0.34 -1.77 16 19 C -0.17 -2.14 9.03 -39.49 -0.36 -2.49 16 20 C 0.07 0.88 6.70 -39.08 -0.26 0.62 16 21 O -0.33 -3.21 9.86 -19.91 -0.20 -3.41 16 22 C 0.03 0.21 9.81 101.05 0.99 1.20 16 23 C 0.13 1.70 6.50 -83.52 -0.54 1.16 16 24 N -0.66 -6.40 5.32 -9.76 -0.05 -6.46 16 25 C 0.51 5.05 7.78 -10.99 -0.09 4.96 16 26 C -0.17 -0.86 10.39 36.01 0.37 -0.48 16 27 O -0.53 -7.40 14.05 5.55 0.08 -7.33 16 28 C -0.13 -1.93 8.69 -39.23 -0.34 -2.27 16 29 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.05 1.05 5.63 -51.93 -0.29 0.76 16 31 H 0.05 1.11 7.88 -51.93 -0.41 0.70 16 32 H 0.07 1.65 4.57 -51.93 -0.24 1.41 16 33 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.27 7.94 8.73 -40.82 -0.36 7.59 16 35 H 0.39 7.15 8.55 -40.82 -0.35 6.80 16 36 H 0.40 5.43 8.84 -40.82 -0.36 5.07 16 37 H 0.14 2.46 6.52 -52.49 -0.34 2.12 16 38 H 0.13 1.36 6.29 -52.49 -0.33 1.03 16 39 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 40 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.05 0.34 7.66 -51.93 -0.40 -0.05 16 42 H 0.41 2.86 8.10 -40.82 -0.33 2.53 16 43 H 0.08 0.20 7.92 -51.93 -0.41 -0.21 16 44 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 46 H 0.16 2.40 5.49 -52.49 -0.29 2.11 16 LS Contribution 370.09 15.07 5.58 5.58 Total: -1.00 -34.37 370.09 -6.91 -41.28 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: -6.24 Total: 14.34 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: -2.05 Total: 0.24 kcal Atomic # 7 Polarization: -58.92 SS G_CDS: 0.33 Total: -58.59 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: -0.06 Total: -23.51 kcal Atomic # 14 Polarization: 25.12 SS G_CDS: -4.47 Total: 20.65 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.37 -6.91 -41.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157026561.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.193 kcal (2) G-P(sol) polarization free energy of solvation -34.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds