Wall clock time and date at job start Tue Mar 31 2020 18:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47533 * 2 1 4 4 H 1.08997 * 109.46824 * 305.55089 * 3 2 1 5 5 C 1.50696 * 109.47514 * 185.54982 * 3 2 1 6 6 H 1.07998 * 120.00251 * 244.46642 * 5 3 2 7 7 C 1.37876 * 119.99741 * 64.46024 * 5 3 2 8 8 N 1.31514 * 119.99920 * 196.38067 * 7 5 3 9 9 Si 1.86800 * 120.00224 * 16.38267 * 7 5 3 10 10 H 1.48504 * 109.47272 * 179.97438 * 9 7 5 11 11 H 1.48503 * 109.47028 * 299.99713 * 9 7 5 12 12 H 1.48496 * 109.46885 * 59.99808 * 9 7 5 13 13 N 1.46496 * 109.47169 * 65.54752 * 3 2 1 14 14 C 1.34780 * 120.00415 * 275.00217 * 13 3 2 15 15 O 1.21597 * 119.99859 * 0.02562 * 14 13 3 16 16 N 1.34771 * 120.00556 * 179.97438 * 14 13 3 17 17 C 1.40139 * 120.00552 * 185.11419 * 16 14 13 18 18 C 1.38861 * 119.98309 * 320.80482 * 17 16 14 19 19 C 1.38197 * 120.10225 * 179.97438 * 18 17 16 20 20 C 1.38533 * 120.08688 * 0.04134 * 19 18 17 21 21 O 1.36055 * 120.01225 * 179.97438 * 20 19 18 22 22 C 1.42901 * 116.99824 * 0.02562 * 21 20 19 23 23 C 1.39285 * 119.97524 * 359.97438 * 20 19 18 24 24 N 1.40118 * 120.05656 * 180.02562 * 23 20 19 25 25 C 1.34769 * 120.00056 * 200.55603 * 24 23 20 26 26 C 1.50700 * 119.99878 * 185.26626 * 25 24 23 27 27 O 1.21290 * 120.00212 * 5.26210 * 25 24 23 28 28 C 1.38676 * 119.88925 * 359.70555 * 23 20 19 29 29 H 1.09000 * 109.47452 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47504 * 300.00565 * 1 2 3 31 31 H 1.09007 * 109.46730 * 59.99889 * 1 2 3 32 32 H 1.08999 * 109.47203 * 239.98987 * 2 1 3 33 33 H 1.09001 * 109.46339 * 119.99874 * 2 1 3 34 34 H 0.96996 * 120.00241 * 354.94491 * 8 7 5 35 35 H 0.97002 * 120.00508 * 95.00367 * 13 3 2 36 36 H 0.97005 * 119.99923 * 5.11613 * 16 14 13 37 37 H 1.07997 * 119.95059 * 359.97438 * 18 17 16 38 38 H 1.08000 * 119.95418 * 180.02562 * 19 18 17 39 39 H 1.09000 * 109.47024 * 59.99805 * 22 21 20 40 40 H 1.09005 * 109.46834 * 179.97438 * 22 21 20 41 41 H 1.08994 * 109.47249 * 299.99666 * 22 21 20 42 42 H 0.97007 * 119.99360 * 20.55070 * 24 23 20 43 43 H 1.08999 * 109.47557 * 359.97438 * 26 25 24 44 44 H 1.09000 * 109.47274 * 119.99848 * 26 25 24 45 45 H 1.09003 * 109.47224 * 239.99549 * 26 25 24 46 46 H 1.08001 * 120.04064 * 180.31915 * 28 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5979 1.9841 -0.8361 5 6 3.5408 1.4446 -0.1374 6 1 4.1561 1.8211 0.6663 7 6 4.1282 0.9658 -1.2892 8 7 5.4083 0.6643 -1.2981 9 14 3.1060 0.7455 -2.8371 10 1 3.9665 0.2217 -3.9282 11 1 2.0047 -0.2142 -2.5705 12 1 2.5345 2.0545 -3.2433 13 7 1.6639 2.0934 1.2573 14 6 0.4477 2.6600 1.3853 15 8 -0.3375 2.6305 0.4573 16 7 0.1014 3.2585 2.5421 17 6 -1.1986 3.7528 2.7137 18 6 -1.8471 4.3808 1.6585 19 6 -3.1294 4.8688 1.8248 20 6 -3.7711 4.7334 3.0450 21 8 -5.0333 5.2148 3.2072 22 6 -5.6364 5.8477 2.0769 23 6 -3.1237 4.1044 4.1058 24 7 -3.7714 3.9661 5.3406 25 6 -3.0509 3.7524 6.4593 26 6 -3.7509 3.4856 7.7669 27 8 -1.8391 3.7747 6.4137 28 6 -1.8396 3.6092 3.9359 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5140 -0.8899 33 1 1.8932 -0.5138 0.8900 34 1 5.9551 0.8471 -0.5181 35 1 2.2901 2.1168 1.9978 36 1 0.7521 3.3471 3.2561 37 1 -1.3487 4.4881 0.7065 38 1 -3.6316 5.3564 1.0024 39 1 -5.6975 5.1373 1.2524 40 1 -6.6389 6.1844 2.3410 41 1 -5.0331 6.7037 1.7749 42 1 -4.7385 4.0243 5.3901 43 1 -4.8297 3.5048 7.6121 44 1 -3.4551 2.5067 8.1443 45 1 -3.4743 4.2526 8.4903 46 1 -1.3373 3.1165 4.7552 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157026561.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:15 Heat of formation + Delta-G solvation = -92.848856 kcal Electronic energy + Delta-G solvation = -29109.658308 eV Core-core repulsion = 24999.178346 eV Total energy + Delta-G solvation = -4110.479963 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.07040 -41.23789 -40.25110 -38.61105 -37.13966 -36.07498 -35.04998 -34.40900 -32.96677 -31.98403 -30.28919 -29.52638 -28.97884 -27.68736 -24.48145 -24.22429 -23.64037 -22.24212 -21.64356 -21.30977 -20.20674 -19.62533 -18.94047 -18.67458 -17.96932 -17.32688 -16.88296 -16.81547 -16.61003 -16.31292 -16.07650 -15.60145 -15.37084 -15.10161 -14.75953 -14.60504 -14.56823 -14.38491 -14.29841 -13.88801 -13.72999 -13.59952 -13.40316 -13.14462 -12.92941 -12.69880 -12.49612 -12.34290 -12.26727 -12.14835 -11.79306 -11.74772 -11.39952 -11.20855 -11.01090 -10.92149 -10.57591 -10.47444 -9.85389 -9.41257 -8.81006 -8.54277 -6.44455 0.18970 0.27402 1.46465 1.51780 1.56462 1.66757 1.74714 2.04889 2.17160 2.32240 2.42502 2.77611 3.01504 3.34569 3.75117 3.87986 4.02535 4.23907 4.32960 4.37311 4.41144 4.44744 4.45576 4.52002 4.56062 4.62024 4.66297 4.71380 4.81242 4.85344 5.08724 5.10322 5.17149 5.19701 5.27021 5.27913 5.35333 5.51287 5.56817 5.62331 5.67530 5.85215 6.00085 6.14403 6.35103 6.44683 6.53038 7.10274 7.12753 7.29813 7.61980 8.59643 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017032 B = 0.002780 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.550190 B =10067.873377 C =11077.027836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.138 4.138 3 C 0.271 3.729 4 H 0.025 0.975 5 C -0.613 4.613 6 H 0.038 0.962 7 C -0.005 4.005 8 N -0.928 5.928 9 Si 1.072 2.928 10 H -0.283 1.283 11 H -0.241 1.241 12 H -0.273 1.273 13 N -0.715 5.715 14 C 0.698 3.302 15 O -0.605 6.605 16 N -0.682 5.682 17 C 0.141 3.859 18 C -0.110 4.110 19 C -0.165 4.165 20 C 0.084 3.916 21 O -0.323 6.323 22 C 0.019 3.981 23 C 0.127 3.873 24 N -0.649 5.649 25 C 0.500 3.500 26 C -0.159 4.159 27 O -0.573 6.573 28 C -0.138 4.138 29 H 0.053 0.947 30 H 0.043 0.957 31 H 0.042 0.958 32 H 0.062 0.938 33 H 0.051 0.949 34 H 0.257 0.743 35 H 0.399 0.601 36 H 0.415 0.585 37 H 0.122 0.878 38 H 0.157 0.843 39 H 0.060 0.940 40 H 0.126 0.874 41 H 0.061 0.939 42 H 0.430 0.570 43 H 0.109 0.891 44 H 0.106 0.894 45 H 0.108 0.892 46 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.703 8.888 15.320 32.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.177 4.177 3 C 0.166 3.834 4 H 0.043 0.957 5 C -0.651 4.651 6 H 0.056 0.944 7 C -0.206 4.206 8 N -0.563 5.563 9 Si 0.894 3.106 10 H -0.209 1.209 11 H -0.165 1.165 12 H -0.199 1.199 13 N -0.367 5.367 14 C 0.398 3.602 15 O -0.485 6.485 16 N -0.331 5.331 17 C 0.046 3.954 18 C -0.132 4.132 19 C -0.184 4.184 20 C 0.036 3.964 21 O -0.237 6.237 22 C -0.075 4.075 23 C 0.031 3.969 24 N -0.294 5.294 25 C 0.292 3.708 26 C -0.218 4.218 27 O -0.453 6.453 28 C -0.160 4.160 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.233 0.767 36 H 0.251 0.749 37 H 0.140 0.860 38 H 0.174 0.826 39 H 0.079 0.921 40 H 0.144 0.856 41 H 0.080 0.920 42 H 0.269 0.731 43 H 0.128 0.872 44 H 0.125 0.875 45 H 0.126 0.874 46 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -26.584 8.244 13.119 30.769 hybrid contribution 1.132 0.774 1.902 2.345 sum -25.451 9.018 15.020 30.898 Atomic orbital electron populations 1.21715 0.95569 1.00051 1.01316 1.22299 0.95331 0.98478 1.01554 1.18638 0.93208 0.89328 0.82184 0.95710 1.22284 0.91475 1.47253 1.04119 0.94363 1.26849 0.97692 0.92102 1.03922 1.70982 1.08100 1.43198 1.34069 0.83740 0.75178 0.78725 0.72951 1.20913 1.16549 1.19871 1.45265 1.14208 1.59052 1.18176 1.16068 0.82800 0.78411 0.82896 1.90853 1.51904 1.65907 1.39840 1.42480 1.12162 1.61122 1.17326 1.17375 0.85417 0.98025 0.94602 1.21056 0.95810 0.97351 0.98939 1.21114 0.95490 1.04718 0.97101 1.18519 0.86364 0.98161 0.93323 1.85948 1.25009 1.72594 1.40182 1.23346 0.99305 0.97002 0.87819 1.16836 0.92950 1.01370 0.85742 1.43510 1.11711 1.70036 1.04171 1.21960 0.87579 0.74437 0.86863 1.21899 1.02730 1.05800 0.91407 1.90650 1.16475 1.51617 1.86571 1.21088 0.94404 1.02638 0.97918 0.92776 0.93825 0.93898 0.91915 0.92975 0.93354 0.76683 0.74851 0.86035 0.82560 0.92124 0.85582 0.92044 0.73110 0.87226 0.87516 0.87367 0.83039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.21 8.53 71.98 0.61 -4.60 16 2 C -0.14 -6.14 5.26 30.59 0.16 -5.98 16 3 C 0.27 13.06 1.82 44.24 0.08 13.14 16 4 H 0.03 1.30 6.32 -2.39 -0.02 1.29 16 5 C -0.61 -33.83 9.02 25.60 0.23 -33.60 16 6 H 0.04 2.24 7.96 -2.91 -0.02 2.21 16 7 C -0.01 -0.29 5.31 84.65 0.45 0.16 16 8 N -0.93 -56.67 13.70 21.45 0.29 -56.38 16 9 Si 1.07 50.50 26.27 68.60 1.80 52.30 16 10 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 11 H -0.24 -10.28 5.59 99.48 0.56 -9.72 16 12 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 13 N -0.72 -29.55 5.03 -461.43 -2.32 -31.87 16 14 C 0.70 27.65 6.99 179.06 1.25 28.90 16 15 O -0.61 -26.96 11.17 -4.02 -0.04 -27.00 16 16 N -0.68 -22.21 5.34 -317.11 -1.69 -23.90 16 17 C 0.14 4.48 6.23 38.08 0.24 4.72 16 18 C -0.11 -3.42 8.67 22.41 0.19 -3.23 16 19 C -0.16 -3.98 9.03 22.33 0.20 -3.78 16 20 C 0.08 1.88 6.70 22.59 0.15 2.04 16 21 O -0.32 -5.38 9.86 -94.17 -0.93 -6.31 16 22 C 0.02 0.19 9.81 113.37 1.11 1.31 16 23 C 0.13 3.11 6.50 38.17 0.25 3.36 16 24 N -0.65 -11.28 5.32 -303.20 -1.61 -12.90 16 25 C 0.50 9.15 7.78 87.66 0.68 9.83 16 26 C -0.16 -1.14 10.39 71.24 0.74 -0.40 16 27 O -0.57 -15.93 14.05 -3.06 -0.04 -15.98 16 28 C -0.14 -4.00 8.69 22.50 0.20 -3.80 16 29 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.04 1.80 5.63 -2.39 -0.01 1.79 16 31 H 0.04 1.79 7.88 -2.38 -0.02 1.77 16 32 H 0.06 2.87 4.57 -2.39 -0.01 2.86 16 33 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.26 15.76 8.73 -92.71 -0.81 14.95 16 35 H 0.40 14.90 8.55 -92.71 -0.79 14.10 16 36 H 0.41 11.41 8.84 -92.70 -0.82 10.59 16 37 H 0.12 4.30 6.52 -2.91 -0.02 4.28 16 38 H 0.16 2.89 6.29 -2.91 -0.02 2.87 16 39 H 0.06 0.58 7.66 -2.39 -0.02 0.57 16 40 H 0.13 0.56 8.14 -2.38 -0.02 0.54 16 41 H 0.06 0.57 7.66 -2.39 -0.02 0.55 16 42 H 0.43 4.63 8.10 -92.70 -0.75 3.88 16 43 H 0.11 0.10 7.92 -2.39 -0.02 0.08 16 44 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 46 H 0.15 4.65 5.49 -2.91 -0.02 4.63 16 Total: -1.00 -76.20 370.09 0.51 -75.69 By element: Atomic # 1 Polarization: 39.77 SS G_CDS: -1.49 Total: 38.28 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: 6.55 Total: 8.06 kcal Atomic # 7 Polarization: -119.72 SS G_CDS: -5.33 Total: -125.05 kcal Atomic # 8 Polarization: -48.27 SS G_CDS: -1.02 Total: -49.29 kcal Atomic # 14 Polarization: 50.50 SS G_CDS: 1.80 Total: 52.30 kcal Total: -76.20 0.51 -75.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157026561.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.160 kcal (2) G-P(sol) polarization free energy of solvation -76.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds