Wall clock time and date at job start Tue Mar 31 2020 18:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46688 * 2 1 4 4 H 1.08991 * 109.47512 * 54.99711 * 3 2 1 5 5 C 1.50699 * 109.46976 * 175.00377 * 3 2 1 6 6 H 1.08005 * 120.00198 * 119.72832 * 5 3 2 7 7 C 1.37877 * 119.99814 * 299.99336 * 5 3 2 8 8 N 1.31520 * 119.99930 * 359.72956 * 7 5 3 9 9 Si 1.86800 * 120.00351 * 179.72687 * 7 5 3 10 10 H 1.48501 * 109.46904 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47153 * 120.00149 * 9 7 5 12 12 H 1.48498 * 109.47380 * 240.00634 * 9 7 5 13 13 N 1.46502 * 109.47160 * 294.99685 * 3 2 1 14 14 C 1.34781 * 119.99711 * 84.99925 * 13 3 2 15 15 O 1.21590 * 120.00115 * 0.02562 * 14 13 3 16 16 N 1.34775 * 119.99982 * 179.97438 * 14 13 3 17 17 C 1.40164 * 120.00018 * 175.54415 * 16 14 13 18 18 C 1.38709 * 120.08751 * 34.64849 * 17 16 14 19 19 C 1.38211 * 119.98510 * 179.97438 * 18 17 16 20 20 C 1.38271 * 120.16011 * 0.02577 * 19 18 17 21 21 C 1.38250 * 120.17617 * 359.97438 * 20 19 18 22 22 C 1.38543 * 120.01353 * 359.74578 * 21 20 19 23 23 O 1.35994 * 120.08021 * 180.25620 * 22 21 20 24 24 C 1.42899 * 116.99642 * 0.27322 * 23 22 21 25 25 C 1.52999 * 109.46958 * 180.02562 * 24 23 22 26 26 C 1.50703 * 109.47292 * 180.02562 * 25 24 23 27 27 N 1.34777 * 120.00010 * 180.02562 * 26 25 24 28 28 O 1.21279 * 119.99812 * 359.97438 * 26 25 24 29 29 H 1.08999 * 109.46592 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47045 * 299.99768 * 1 2 3 31 31 H 1.09002 * 109.47481 * 60.00436 * 1 2 3 32 32 H 1.08998 * 109.47461 * 240.00443 * 2 1 3 33 33 H 1.08992 * 109.47430 * 119.99589 * 2 1 3 34 34 H 0.97002 * 119.99843 * 179.97438 * 8 7 5 35 35 H 0.96992 * 120.00523 * 265.00213 * 13 3 2 36 36 H 0.97004 * 119.99992 * 355.54735 * 16 14 13 37 37 H 1.07999 * 120.00731 * 359.95901 * 18 17 16 38 38 H 1.07994 * 119.91766 * 179.97438 * 19 18 17 39 39 H 1.07996 * 119.90627 * 179.97438 * 20 19 18 40 40 H 1.08001 * 119.99119 * 180.02562 * 21 20 19 41 41 H 1.08994 * 109.47355 * 299.99995 * 24 23 22 42 42 H 1.09001 * 109.47510 * 60.00136 * 24 23 22 43 43 H 1.09003 * 109.47245 * 300.00144 * 25 24 23 44 44 H 1.09001 * 109.46944 * 59.99734 * 25 24 23 45 45 H 0.96998 * 120.00130 * 359.97438 * 27 26 25 46 46 H 0.96993 * 119.99964 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 6 3.5418 1.4444 0.1237 6 1 4.1473 1.8851 -0.6545 7 6 4.1432 0.8786 1.2279 8 7 3.4059 0.3421 2.1757 9 14 6.0052 0.8741 1.3778 10 1 6.5991 1.5349 0.1879 11 1 6.4049 1.6108 2.6037 12 1 6.4917 -0.5265 1.4611 13 7 1.6524 2.0975 -1.2518 14 6 0.4350 2.6643 -1.3670 15 8 -0.3414 2.6325 -0.4318 16 7 0.0786 3.2673 -2.5185 17 6 -1.2192 3.7743 -2.6716 18 6 -1.8843 4.3225 -1.5848 19 6 -3.1637 4.8223 -1.7383 20 6 -3.7836 4.7771 -2.9734 21 6 -3.1269 4.2322 -4.0610 22 6 -1.8421 3.7344 -3.9167 23 8 -1.1928 3.2028 -4.9869 24 6 -1.8933 3.1952 -6.2324 25 6 -1.0104 2.5631 -7.3102 26 6 -1.7488 2.5556 -8.6239 27 7 -1.1625 2.0423 -9.7236 28 8 -2.8710 3.0107 -8.6913 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5137 0.8899 34 1 3.8291 -0.0563 2.9523 35 1 2.2718 2.1232 -1.9978 36 1 0.7202 3.3503 -3.2413 37 1 -1.4026 4.3585 -0.6188 38 1 -3.6806 5.2485 -0.8913 39 1 -4.7836 5.1685 -3.0886 40 1 -3.6138 4.1988 -5.0245 41 1 -2.8111 2.6164 -6.1296 42 1 -2.1389 4.2182 -6.5174 43 1 -0.0922 3.1415 -7.4132 44 1 -0.7651 1.5400 -7.0250 45 1 -0.2652 1.6781 -9.6696 46 1 -1.6379 2.0372 -10.5690 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157233545.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:22 Heat of formation + Delta-G solvation = -110.069430 kcal Electronic energy + Delta-G solvation = -28695.810312 eV Core-core repulsion = 24584.583609 eV Total energy + Delta-G solvation = -4111.226703 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.80230 -40.81680 -40.27181 -38.41318 -37.09028 -35.56277 -34.70961 -34.28175 -32.94967 -32.65464 -30.98532 -30.00010 -28.63609 -25.92351 -25.10979 -23.77940 -23.00111 -22.11419 -21.34273 -21.25101 -19.79921 -19.39265 -18.44598 -18.14035 -17.80807 -17.44978 -17.38947 -16.90763 -16.74479 -16.21533 -16.02310 -15.81220 -15.58284 -15.07025 -14.97689 -14.57155 -14.54265 -14.39437 -14.10846 -13.84318 -13.49530 -13.17126 -12.97984 -12.92003 -12.82112 -12.68345 -12.55570 -12.19757 -12.07461 -12.01227 -11.73675 -11.60228 -11.28534 -11.17014 -11.02571 -10.83830 -10.67353 -10.52031 -9.69533 -9.49006 -8.72259 -8.13758 -6.30495 0.37388 0.46747 1.46050 1.47167 1.57854 1.58694 1.79009 1.93125 2.28287 2.44756 2.84800 2.91937 3.15982 3.50683 3.65634 3.95518 3.97041 4.07229 4.18567 4.28277 4.46846 4.51143 4.52355 4.59666 4.61473 4.74579 4.75543 4.79115 4.92924 5.08834 5.18655 5.28864 5.36879 5.47279 5.55849 5.58687 5.63192 5.69944 5.78180 5.87208 5.89138 5.90566 6.19329 6.32181 6.39550 6.44668 6.77917 7.30047 7.30307 7.38018 7.77514 8.92019 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012066 B = 0.002707 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.068980 B =10339.354852 C =11926.809071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.120 4.120 3 C 0.297 3.703 4 H 0.000 1.000 5 C -0.545 4.545 6 H 0.072 0.928 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.970 3.030 10 H -0.260 1.260 11 H -0.285 1.285 12 H -0.279 1.279 13 N -0.716 5.716 14 C 0.694 3.306 15 O -0.613 6.613 16 N -0.673 5.673 17 C 0.125 3.875 18 C -0.109 4.109 19 C -0.140 4.140 20 C -0.097 4.097 21 C -0.190 4.190 22 C 0.095 3.905 23 O -0.320 6.320 24 C 0.072 3.928 25 C -0.137 4.137 26 C 0.524 3.476 27 N -0.834 5.834 28 O -0.594 6.594 29 H 0.042 0.958 30 H 0.026 0.974 31 H 0.038 0.962 32 H 0.040 0.960 33 H 0.072 0.928 34 H 0.265 0.735 35 H 0.401 0.599 36 H 0.417 0.583 37 H 0.121 0.879 38 H 0.142 0.858 39 H 0.155 0.845 40 H 0.150 0.850 41 H 0.062 0.938 42 H 0.070 0.930 43 H 0.129 0.871 44 H 0.122 0.878 45 H 0.420 0.580 46 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.013 5.395 -23.033 24.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.159 4.159 3 C 0.193 3.807 4 H 0.018 0.982 5 C -0.583 4.583 6 H 0.090 0.910 7 C -0.185 4.185 8 N -0.553 5.553 9 Si 0.795 3.205 10 H -0.184 1.184 11 H -0.212 1.212 12 H -0.205 1.205 13 N -0.368 5.368 14 C 0.395 3.605 15 O -0.493 6.493 16 N -0.322 5.322 17 C 0.029 3.971 18 C -0.130 4.130 19 C -0.159 4.159 20 C -0.116 4.116 21 C -0.209 4.209 22 C 0.048 3.952 23 O -0.235 6.235 24 C -0.003 4.003 25 C -0.176 4.176 26 C 0.309 3.691 27 N -0.398 5.398 28 O -0.475 6.475 29 H 0.061 0.939 30 H 0.045 0.955 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.091 0.909 34 H 0.074 0.926 35 H 0.235 0.765 36 H 0.254 0.746 37 H 0.139 0.861 38 H 0.160 0.840 39 H 0.173 0.827 40 H 0.168 0.832 41 H 0.081 0.919 42 H 0.088 0.912 43 H 0.147 0.853 44 H 0.140 0.860 45 H 0.252 0.748 46 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -9.077 5.438 -21.873 24.298 hybrid contribution 1.464 -0.261 -0.390 1.538 sum -7.613 5.177 -22.264 24.092 Atomic orbital electron populations 1.21628 0.97157 0.98765 1.00110 1.21793 0.93550 0.99342 1.01212 1.18267 0.93467 0.88747 0.80180 0.98209 1.21588 0.91277 1.38892 1.06551 0.90987 1.25755 1.03242 0.94432 0.95030 1.70063 1.36959 1.38531 1.09786 0.85321 0.79190 0.77769 0.78174 1.18396 1.21164 1.20490 1.45429 1.14072 1.58791 1.18497 1.16152 0.82999 0.78535 0.82852 1.90856 1.52743 1.66031 1.39664 1.42310 1.12448 1.60320 1.17116 1.17043 0.86205 1.01463 0.92356 1.21236 0.96623 0.97042 0.98103 1.21220 0.94268 1.01520 0.98897 1.21244 1.00794 0.98143 0.91376 1.21338 0.93621 1.04381 1.01574 1.18680 0.91939 0.98247 0.86360 1.85913 1.43581 1.77260 1.16722 1.22483 0.95168 1.01863 0.80829 1.21452 1.00332 1.05919 0.89917 1.20516 0.85633 0.76166 0.86785 1.43686 1.21748 1.63116 1.11283 1.90767 1.21371 1.48595 1.86732 0.93931 0.95513 0.94253 0.94116 0.90927 0.92620 0.76497 0.74629 0.86126 0.84038 0.82690 0.83248 0.91920 0.91158 0.85283 0.85973 0.74812 0.75917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.55 8.51 71.98 0.61 -4.93 16 2 C -0.12 -5.95 5.45 30.60 0.17 -5.78 16 3 C 0.30 15.20 2.24 44.25 0.10 15.30 16 4 H 0.00 0.00 7.58 -2.39 -0.02 -0.02 16 5 C -0.54 -28.48 8.73 25.60 0.22 -28.26 16 6 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 7 C 0.02 0.82 5.29 84.65 0.45 1.27 16 8 N -0.91 -52.06 11.31 21.45 0.24 -51.82 16 9 Si 0.97 41.64 29.54 68.60 2.03 43.66 16 10 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 11 H -0.29 -12.29 7.11 99.48 0.71 -11.59 16 12 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 13 N -0.72 -29.77 5.03 -461.41 -2.32 -32.09 16 14 C 0.69 28.58 6.98 179.05 1.25 29.83 16 15 O -0.61 -29.73 10.89 -4.00 -0.04 -29.77 16 16 N -0.67 -21.88 5.20 -316.80 -1.65 -23.53 16 17 C 0.12 3.99 6.32 38.17 0.24 4.23 16 18 C -0.11 -3.62 8.70 22.38 0.19 -3.43 16 19 C -0.14 -3.64 10.04 22.27 0.22 -3.42 16 20 C -0.10 -2.09 10.04 22.28 0.22 -1.86 16 21 C -0.19 -4.29 9.04 22.35 0.20 -4.09 16 22 C 0.10 2.53 6.70 22.59 0.15 2.68 16 23 O -0.32 -7.21 9.69 -93.49 -0.91 -8.12 16 24 C 0.07 1.24 4.03 71.98 0.29 1.53 16 25 C -0.14 -1.46 6.07 29.85 0.18 -1.28 16 26 C 0.52 6.99 8.10 87.66 0.71 7.70 16 27 N -0.83 -4.46 8.87 -173.53 -1.54 -6.00 16 28 O -0.59 -13.65 16.82 -3.03 -0.05 -13.70 16 29 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.03 1.33 7.84 -2.39 -0.02 1.31 16 31 H 0.04 1.81 5.65 -2.39 -0.01 1.79 16 32 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.07 4.01 5.96 -2.39 -0.01 4.00 16 34 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 35 H 0.40 14.01 8.56 -92.71 -0.79 13.21 16 36 H 0.42 10.92 8.58 -92.71 -0.80 10.12 16 37 H 0.12 4.72 6.19 -2.91 -0.02 4.70 16 38 H 0.14 3.04 8.06 -2.91 -0.02 3.02 16 39 H 0.16 2.28 8.06 -2.91 -0.02 2.26 16 40 H 0.15 2.73 6.30 -2.91 -0.02 2.71 16 41 H 0.06 1.18 7.61 -2.39 -0.02 1.16 16 42 H 0.07 1.21 7.63 -2.39 -0.02 1.19 16 43 H 0.13 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.42 -0.37 8.83 -92.71 -0.82 -1.19 16 46 H 0.41 1.75 8.93 -92.71 -0.83 0.92 16 Total: -1.00 -75.51 379.28 -1.19 -76.70 By element: Atomic # 1 Polarization: 37.32 SS G_CDS: -2.17 Total: 35.15 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: 5.22 Total: 9.50 kcal Atomic # 7 Polarization: -108.16 SS G_CDS: -5.26 Total: -113.43 kcal Atomic # 8 Polarization: -50.59 SS G_CDS: -1.00 Total: -51.59 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.66 kcal Total: -75.51 -1.19 -76.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157233545.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.366 kcal (2) G-P(sol) polarization free energy of solvation -75.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds