Wall clock time and date at job start Tue Mar 31 2020 18:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.46729 * 2 1 4 4 H 1.08997 * 109.47455 * 54.99982 * 3 2 1 5 5 C 1.50707 * 109.47099 * 174.99832 * 3 2 1 6 6 H 1.08000 * 119.99827 * 119.99964 * 5 3 2 7 7 C 1.37872 * 119.99483 * 300.00128 * 5 3 2 8 8 N 1.31512 * 120.00498 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99560 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47569 * 59.99716 * 9 7 5 11 11 H 1.48501 * 109.47206 * 179.97438 * 9 7 5 12 12 H 1.48508 * 109.47098 * 299.99569 * 9 7 5 13 13 N 1.46501 * 109.47526 * 294.99669 * 3 2 1 14 14 C 1.34776 * 119.99921 * 85.27632 * 13 3 2 15 15 O 1.21591 * 119.99940 * 359.72517 * 14 13 3 16 16 N 1.34773 * 120.00081 * 179.72860 * 14 13 3 17 17 C 1.40153 * 120.00249 * 175.37850 * 16 14 13 18 18 C 1.38829 * 120.01887 * 214.81727 * 17 16 14 19 19 C 1.38096 * 119.98659 * 179.79000 * 18 17 16 20 20 C 1.38714 * 120.01555 * 0.48580 * 19 18 17 21 21 O 1.35981 * 119.98581 * 179.72327 * 20 19 18 22 22 C 1.42897 * 117.00076 * 0.02562 * 21 20 19 23 23 C 1.50700 * 109.47045 * 180.02562 * 22 21 20 24 24 O 1.21281 * 119.99970 * 359.97438 * 23 22 21 25 25 N 1.34779 * 119.99690 * 179.97438 * 23 22 21 26 26 C 1.46504 * 119.99692 * 179.97438 * 25 23 22 27 27 C 1.38713 * 120.02500 * 359.74271 * 20 19 18 28 28 C 1.38087 * 120.01578 * 0.02562 * 27 20 19 29 29 H 1.08992 * 109.47131 * 299.99924 * 1 2 3 30 30 H 1.08999 * 109.46673 * 60.00094 * 1 2 3 31 31 H 1.08997 * 109.47026 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.47131 * 240.00076 * 2 1 3 33 33 H 1.08999 * 109.46889 * 119.99397 * 2 1 3 34 34 H 0.97007 * 120.00121 * 179.97438 * 8 7 5 35 35 H 0.96996 * 120.00105 * 265.00728 * 13 3 2 36 36 H 0.96995 * 120.00043 * 355.38323 * 16 14 13 37 37 H 1.08008 * 120.00408 * 0.02562 * 18 17 16 38 38 H 1.08012 * 119.99129 * 180.22756 * 19 18 17 39 39 H 1.09004 * 109.47000 * 299.99929 * 22 21 20 40 40 H 1.09002 * 109.47681 * 59.99723 * 22 21 20 41 41 H 0.97002 * 120.00385 * 0.02562 * 25 23 22 42 42 H 1.09000 * 109.46676 * 60.00343 * 26 25 23 43 43 H 1.08999 * 109.46902 * 180.02562 * 26 25 23 44 44 H 1.09004 * 109.47300 * 300.00347 * 26 25 23 45 45 H 1.08003 * 119.98864 * 180.02562 * 27 20 19 46 46 H 1.08007 * 120.01026 * 179.97438 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8890 -0.6523 7 6 4.1432 0.8785 1.2280 8 7 3.4061 0.3375 2.1733 9 14 6.0049 0.8802 1.3813 10 1 6.5004 2.2801 1.3809 11 1 6.3977 0.2170 2.6505 12 1 6.5967 0.1453 0.2344 13 7 1.6525 2.0975 -1.2518 14 6 0.4372 2.6692 -1.3651 15 8 -0.3393 2.6370 -0.4301 16 7 0.0828 3.2766 -2.5148 17 6 -1.2140 3.7859 -2.6675 18 6 -1.8358 3.7419 -3.9080 19 6 -3.1152 4.2400 -4.0567 20 6 -3.7752 4.7933 -2.9694 21 8 -5.0329 5.2886 -3.1178 22 6 -5.6131 5.2057 -4.4210 23 6 -6.9977 5.8000 -4.3931 24 8 -7.4438 6.2498 -3.3589 25 7 -7.7402 5.8317 -5.5174 26 6 -9.0865 6.4089 -5.4902 27 6 -3.1526 4.8418 -1.7307 28 6 -1.8752 4.3398 -1.5796 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5137 0.8900 34 1 3.8292 -0.0609 2.9500 35 1 2.2719 2.1232 -1.9978 36 1 0.7252 3.3612 -3.2367 37 1 -1.3205 3.3148 -4.7557 38 1 -3.6005 4.2025 -5.0210 39 1 -4.9955 5.7576 -5.1295 40 1 -5.6718 4.1612 -4.7269 41 1 -7.3836 5.4716 -6.3445 42 1 -9.0277 7.4534 -5.1839 43 1 -9.5290 6.3458 -6.4843 44 1 -9.7043 5.8568 -4.7820 45 1 -3.6672 5.2724 -0.8844 46 1 -1.3903 4.3780 -0.6152 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157397845.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:37 Heat of formation + Delta-G solvation = -69.248962 kcal Electronic energy + Delta-G solvation = -27926.694790 eV Core-core repulsion = 23817.238196 eV Total energy + Delta-G solvation = -4109.456594 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.66736 -40.04775 -39.18606 -37.37650 -35.23692 -35.04987 -33.92180 -32.37003 -31.15215 -30.85259 -29.92863 -28.28466 -26.78243 -26.19756 -23.22330 -22.97398 -22.16620 -21.12904 -20.46343 -19.52034 -18.48759 -18.31443 -17.64998 -17.32604 -16.70685 -16.25823 -15.95863 -15.50202 -15.08995 -15.08448 -14.91307 -14.35717 -14.20870 -13.96349 -13.50375 -13.43659 -13.12859 -13.09257 -12.78023 -12.69814 -12.61895 -12.48633 -12.17023 -11.58265 -11.34182 -11.24727 -11.02152 -10.95764 -10.82513 -10.32419 -10.27278 -10.17849 -9.77104 -9.66967 -9.52882 -9.34762 -9.05279 -8.88288 -8.50860 -7.92969 -7.49992 -6.12822 -4.22455 1.38709 1.46093 2.13779 2.23782 3.18995 3.24995 3.30847 3.32721 3.42375 3.66094 4.03592 4.18578 4.31745 4.54786 4.64353 4.72109 4.82432 4.85624 4.96033 5.02438 5.18719 5.31044 5.33301 5.47407 5.70992 5.81550 5.98386 6.02590 6.27376 6.42246 6.46626 6.50035 6.65068 6.70384 6.86053 7.02774 7.05726 7.14362 7.35340 7.36725 7.39307 7.46728 7.63842 7.71843 7.86839 7.98866 8.18601 8.73107 8.84746 9.25823 9.46176 10.92379 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.037711 B = 0.001809 C = 0.001789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.304706 B =15477.899980 C =15643.569184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.128 4.128 3 C 0.286 3.714 4 H 0.051 0.949 5 C -0.536 4.536 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.719 5.719 14 C 0.692 3.308 15 O -0.577 6.577 16 N -0.697 5.697 17 C 0.149 3.851 18 C -0.118 4.118 19 C -0.191 4.191 20 C 0.098 3.902 21 O -0.293 6.293 22 C 0.043 3.957 23 C 0.513 3.487 24 O -0.512 6.512 25 N -0.735 5.735 26 C 0.089 3.911 27 C -0.125 4.125 28 C -0.079 4.079 29 H 0.050 0.950 30 H 0.038 0.962 31 H 0.021 0.979 32 H 0.030 0.970 33 H 0.099 0.901 34 H 0.265 0.735 35 H 0.385 0.615 36 H 0.401 0.599 37 H 0.126 0.874 38 H 0.126 0.874 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.403 0.597 42 H 0.061 0.939 43 H 0.078 0.922 44 H 0.061 0.939 45 H 0.133 0.867 46 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.838 8.786 -20.376 27.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.167 4.167 3 C 0.184 3.816 4 H 0.068 0.932 5 C -0.574 4.574 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.370 5.370 14 C 0.393 3.607 15 O -0.454 6.454 16 N -0.346 5.346 17 C 0.053 3.947 18 C -0.139 4.139 19 C -0.211 4.211 20 C 0.052 3.948 21 O -0.206 6.206 22 C -0.036 4.036 23 C 0.298 3.702 24 O -0.386 6.386 25 N -0.389 5.389 26 C -0.055 4.055 27 C -0.144 4.144 28 C -0.100 4.100 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.040 0.960 32 H 0.049 0.951 33 H 0.117 0.883 34 H 0.075 0.925 35 H 0.217 0.783 36 H 0.235 0.765 37 H 0.144 0.856 38 H 0.144 0.856 39 H 0.109 0.891 40 H 0.110 0.890 41 H 0.237 0.763 42 H 0.080 0.920 43 H 0.097 0.903 44 H 0.080 0.920 45 H 0.151 0.849 46 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -17.894 8.999 -18.308 27.136 hybrid contribution 1.819 -0.371 -1.411 2.332 sum -16.076 8.628 -19.719 26.865 Atomic orbital electron populations 1.21811 0.98235 0.97899 1.01321 1.21953 0.92711 0.99857 1.02188 1.18720 0.93963 0.88912 0.79955 0.93168 1.21182 0.90660 1.39238 1.06337 0.92173 1.24870 0.98580 0.94796 0.95361 1.69885 1.35216 1.37407 1.09306 0.86511 0.84844 0.78287 0.77442 1.20213 1.21125 1.20207 1.45830 1.13447 1.58370 1.19318 1.16115 0.83652 0.78662 0.82268 1.90885 1.51721 1.64862 1.37949 1.42830 1.11989 1.61352 1.18401 1.17485 0.85713 0.97341 0.94160 1.20616 0.94512 1.01987 0.96771 1.20860 0.96422 1.05811 0.97967 1.18933 0.83893 0.97213 0.94725 1.86155 1.27629 1.77753 1.29017 1.22354 0.92562 1.02202 0.86505 1.20203 0.86654 0.79462 0.83875 1.90777 1.72194 1.44865 1.30734 1.45621 1.17507 1.63925 1.11895 1.21567 0.82306 0.99103 1.02512 1.20368 0.95129 1.03579 0.95318 1.21318 0.93967 0.94622 1.00079 0.93111 0.94287 0.96031 0.95138 0.88277 0.92466 0.78277 0.76456 0.85639 0.85644 0.89055 0.89014 0.76291 0.91989 0.90333 0.91979 0.84907 0.82952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.52 37.16 0.32 -2.74 16 2 C -0.13 -3.09 5.45 -26.73 -0.15 -3.24 16 3 C 0.29 7.06 2.24 -69.08 -0.15 6.90 16 4 H 0.05 1.44 7.57 -51.93 -0.39 1.05 16 5 C -0.54 -13.85 8.73 -34.44 -0.30 -14.15 16 6 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.39 11.29 55.43 0.63 -23.76 16 9 Si 0.90 20.33 29.54 -169.99 -5.02 15.31 16 10 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 13 N -0.72 -14.38 5.02 -59.81 -0.30 -14.68 16 14 C 0.69 13.43 6.99 -86.92 -0.61 12.82 16 15 O -0.58 -13.14 10.92 5.29 0.06 -13.08 16 16 N -0.70 -10.30 5.35 -14.19 -0.08 -10.38 16 17 C 0.15 2.17 6.30 -83.61 -0.53 1.64 16 18 C -0.12 -1.36 9.96 -39.41 -0.39 -1.75 16 19 C -0.19 -2.03 9.03 -39.46 -0.36 -2.39 16 20 C 0.10 1.25 6.69 -39.23 -0.26 0.99 16 21 O -0.29 -3.72 9.67 -39.59 -0.38 -4.11 16 22 C 0.04 0.34 5.22 36.01 0.19 0.52 16 23 C 0.51 4.80 7.91 -10.98 -0.09 4.71 16 24 O -0.51 -7.45 16.50 -14.35 -0.24 -7.68 16 25 N -0.74 -3.78 5.71 -67.07 -0.38 -4.17 16 26 C 0.09 0.40 10.70 59.85 0.64 1.04 16 27 C -0.12 -1.79 9.98 -39.46 -0.39 -2.19 16 28 C -0.08 -1.26 8.69 -39.41 -0.34 -1.60 16 29 H 0.05 1.22 7.85 -51.93 -0.41 0.81 16 30 H 0.04 0.87 5.66 -51.93 -0.29 0.57 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 34 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 35 H 0.39 6.58 8.56 -40.82 -0.35 6.24 16 36 H 0.40 4.51 8.84 -40.82 -0.36 4.15 16 37 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 38 H 0.13 0.88 6.29 -52.48 -0.33 0.55 16 39 H 0.09 0.47 7.66 -51.93 -0.40 0.07 16 40 H 0.09 0.50 7.66 -51.93 -0.40 0.11 16 41 H 0.40 0.60 8.83 -40.82 -0.36 0.24 16 42 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.08 0.11 8.14 -51.93 -0.42 -0.32 16 44 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.13 1.81 8.06 -52.48 -0.42 1.38 16 46 H 0.15 2.75 6.22 -52.48 -0.33 2.42 16 LS Contribution 380.98 15.07 5.74 5.74 Total: -1.00 -34.99 380.98 -8.92 -43.91 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: -6.43 Total: 10.62 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: -2.52 Total: 2.27 kcal Atomic # 7 Polarization: -52.86 SS G_CDS: -0.13 Total: -52.99 kcal Atomic # 8 Polarization: -24.31 SS G_CDS: -0.56 Total: -24.87 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.99 -8.92 -43.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157397845.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.338 kcal (2) G-P(sol) polarization free energy of solvation -34.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds